Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11795

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,679,271	-				+1.9
2,679,282	-				-1.2
2,679,282	-				+1.9
2,679,289	+				-2.0
2,679,290	-				-0.9
2,679,319	-				-0.3
2,679,354	+				-1.4
2,679,354	+				+0.9
2,679,354	+				-0.1
2,679,449	+		DDA3937_RS11790	0.11	-2.4
2,679,449	+		DDA3937_RS11790	0.11	-1.4
2,679,450	-		DDA3937_RS11790	0.11	+0.8
2,679,450	-		DDA3937_RS11790	0.11	-0.2
2,679,455	-		DDA3937_RS11790	0.12	-0.5
2,679,455	-		DDA3937_RS11790	0.12	+1.7
2,679,455	-		DDA3937_RS11790	0.12	-0.9
2,679,455	-		DDA3937_RS11790	0.12	-0.5
2,679,507	+		DDA3937_RS11790	0.19	-1.1
2,679,507	+		DDA3937_RS11790	0.19	-1.4
2,679,508	-		DDA3937_RS11790	0.19	+0.7
2,679,508	-		DDA3937_RS11790	0.19	+2.4
2,679,508	-		DDA3937_RS11790	0.19	-0.1
2,679,535	+		DDA3937_RS11790	0.22	+0.6
2,679,536	-		DDA3937_RS11790	0.22	-0.1
2,679,536	-		DDA3937_RS11790	0.22	-0.5
2,679,571	-		DDA3937_RS11790	0.27	+0.6
2,679,571	-		DDA3937_RS11790	0.27	+0.1
2,679,571	-		DDA3937_RS11790	0.27	+0.5
2,679,664	+		DDA3937_RS11790	0.39	-1.5
2,679,665	-		DDA3937_RS11790	0.39	-0.3
2,679,816	+		DDA3937_RS11790	0.58	-0.1
2,679,816	+		DDA3937_RS11790	0.58	-0.1
2,679,816	+		DDA3937_RS11790	0.58	-0.8
2,679,817	-		DDA3937_RS11790	0.58	-0.1
2,679,817	-		DDA3937_RS11790	0.58	+1.5
2,679,818	+		DDA3937_RS11790	0.58	+0.1
2,679,818	+		DDA3937_RS11790	0.58	+1.1
2,679,818	+		DDA3937_RS11790	0.58	-1.1
2,679,819	-		DDA3937_RS11790	0.58	-0.1
2,679,819	-		DDA3937_RS11790	0.58	+1.1
2,680,154	-				-0.4
2,680,154	-				+2.3
2,680,188	-				-0.9
2,680,188	-				-1.5
2,680,247	-				-2.0
2,680,274	-				+0.3
2,680,338	-				+0.7
2,680,344	+		DDA3937_RS11795	0.10	-0.1
2,680,344	+		DDA3937_RS11795	0.10	+0.5
2,680,344	+				-0.9
2,680,344	+		DDA3937_RS11795	0.10	-1.1
2,680,344	+		DDA3937_RS11795	0.10	+0.6
2,680,345	-		DDA3937_RS11795	0.10	+1.2
2,680,345	-		DDA3937_RS11795	0.10	+2.8
2,680,345	-		DDA3937_RS11795	0.10	-1.5
2,680,345	-		DDA3937_RS11795	0.10	+1.5
2,680,345	-		DDA3937_RS11795	0.10	-3.2
2,680,345	-		DDA3937_RS11795	0.10	-1.7
2,680,435	+		DDA3937_RS11795	0.22	-0.3
2,680,766	-		DDA3937_RS11795	0.64	-0.9
2,680,766	-		DDA3937_RS11795	0.64	-1.2
2,680,766	-		DDA3937_RS11795	0.64	-0.3
2,681,020	-				+0.0
2,681,041	+				+1.5
2,681,041	+				-1.7
2,681,041	+				-1.3
2,681,042	-				-0.4
2,681,042	-				+2.0
2,681,054	-				+0.8
2,681,054	-				-0.0
2,681,054	-				+2.2
2,681,106	+				-0.7
2,681,107	-				-2.3
2,681,107	-				-2.2
2,681,167	+		DDA3937_RS22800	0.12	-1.5
2,681,168	-		DDA3937_RS22800	0.12	+0.2
2,681,241	+		DDA3937_RS22800	0.24	-0.3
2,681,241	+		DDA3937_RS22800	0.24	-2.2
2,681,241	+		DDA3937_RS22800	0.24	-1.1
2,681,242	-		DDA3937_RS22800	0.24	-3.3
2,681,242	-		DDA3937_RS22800	0.24	-0.4
2,681,242	-		DDA3937_RS22800	0.24	-0.1
2,681,331	+		DDA3937_RS22800	0.38	-2.7
2,681,337	+		DDA3937_RS22800	0.39	-2.6
2,681,366	-		DDA3937_RS22800	0.43	-1.5
2,681,366	-		DDA3937_RS22800	0.43	+0.7
2,681,366	-		DDA3937_RS22800	0.43	+0.8
2,681,366	-		DDA3937_RS22800	0.43	-1.3
2,681,366	-		DDA3937_RS22800	0.43	+2.2
2,681,366	-		DDA3937_RS22800	0.43	+0.5
2,681,387	-		DDA3937_RS22800	0.47	-0.1
2,681,398	+		DDA3937_RS22800	0.48	-3.1
2,681,398	+		DDA3937_RS22800	0.48	+0.5
2,681,399	-		DDA3937_RS22800	0.49	-0.1
2,681,399	-		DDA3937_RS22800	0.49	+1.8
2,681,428	+		DDA3937_RS22800	0.53	-1.9
2,681,428	+		DDA3937_RS22800	0.53	-0.1
2,681,451	+		DDA3937_RS22800	0.57	+0.1
2,681,452	-		DDA3937_RS22800	0.57	-1.1
2,681,478	+		DDA3937_RS22800	0.61	-2.0
2,681,529	+				-1.1
2,681,529	+		DDA3937_RS22800	0.69	-0.3
2,681,529	+		DDA3937_RS22800	0.69	-1.6
2,681,530	-		DDA3937_RS22800	0.69	-1.1
2,681,530	-		DDA3937_RS22800	0.69	+0.7
2,681,530	-		DDA3937_RS22800	0.69	+1.1
2,681,604	+		DDA3937_RS22800	0.81	-2.6
2,681,604	+		DDA3937_RS22800	0.81	+0.1
2,681,604	+		DDA3937_RS22800	0.81	-1.7
2,681,604	+		DDA3937_RS22800	0.81	-0.3
2,681,606	+		DDA3937_RS22800	0.81	-2.9
2,681,606	+		DDA3937_RS22800	0.81	+2.0
2,681,606	+		DDA3937_RS22800	0.81	+1.7
2,681,606	+		DDA3937_RS22800	0.81	-0.5
2,681,606	+		DDA3937_RS22800	0.81	-1.5
2,681,606	+		DDA3937_RS22800	0.81	+0.2
2,681,607	-		DDA3937_RS22800	0.81	+2.1
2,681,607	-		DDA3937_RS22800	0.81	-0.3
2,681,714	+				-2.0
2,681,721	+				-0.5
2,681,788	-				+2.3
2,681,845	-				-1.7
2,681,867	-		DDA3937_RS11805	0.11	-0.9
2,681,927	+		DDA3937_RS11805	0.18	-1.2
2,681,955	+		DDA3937_RS11805	0.21	-1.5
2,681,956	-		DDA3937_RS11805	0.21	+1.6
2,681,956	-		DDA3937_RS11805	0.21	-0.9
2,681,956	-		DDA3937_RS11805	0.21	-0.7
2,681,956	-		DDA3937_RS11805	0.21	-2.3
2,681,956	-		DDA3937_RS11805	0.21	-0.1
2,681,956	-		DDA3937_RS11805	0.21	+0.8
2,681,956	-		DDA3937_RS11805	0.21	-3.8
2,681,956	-		DDA3937_RS11805	0.21	-1.9
2,681,956	-		DDA3937_RS11805	0.21	-0.1
2,681,968	+		DDA3937_RS11805	0.22	-0.5
2,681,969	-		DDA3937_RS11805	0.22	-2.5
2,681,969	-		DDA3937_RS11805	0.22	-0.9
2,682,014	+		DDA3937_RS11805	0.27	-2.8
2,682,014	+		DDA3937_RS11805	0.27	+2.2
2,682,014	+		DDA3937_RS11805	0.27	+1.8
2,682,015	-		DDA3937_RS11805	0.27	-2.1
2,682,015	-		DDA3937_RS11805	0.27	-3.3