Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS11775 and DDA3937_RS11780 are separated by 107 nucleotides DDA3937_RS11780 and DDA3937_RS11785 are separated by 28 nucleotides
DDA3937_RS11775: DDA3937_RS11775 - aminotransferase class IV, at 2,676,240 to 2,677,157
_RS11775
DDA3937_RS11780: DDA3937_RS11780 - HAD family phosphatase, at 2,677,265 to 2,678,074
_RS11780
DDA3937_RS11785: DDA3937_RS11785 - MFS transporter, at 2,678,103 to 2,679,281
_RS11785
Position (kb)
2677
2678
2679 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2676.315 kb on + strand at 2676.316 kb on - strand at 2676.522 kb on - strand, within DDA3937_RS11775 at 2676.522 kb on - strand, within DDA3937_RS11775 at 2676.623 kb on + strand, within DDA3937_RS11775 at 2676.646 kb on + strand, within DDA3937_RS11775 at 2676.647 kb on - strand, within DDA3937_RS11775 at 2676.660 kb on + strand, within DDA3937_RS11775 at 2676.660 kb on + strand, within DDA3937_RS11775 at 2676.660 kb on + strand, within DDA3937_RS11775 at 2676.660 kb on + strand, within DDA3937_RS11775 at 2676.660 kb on + strand, within DDA3937_RS11775 at 2676.661 kb on - strand, within DDA3937_RS11775 at 2676.662 kb on + strand, within DDA3937_RS11775 at 2676.662 kb on + strand, within DDA3937_RS11775 at 2676.662 kb on + strand, within DDA3937_RS11775 at 2676.663 kb on - strand, within DDA3937_RS11775 at 2676.663 kb on - strand, within DDA3937_RS11775 at 2676.663 kb on - strand, within DDA3937_RS11775 at 2676.755 kb on + strand, within DDA3937_RS11775 at 2676.755 kb on + strand, within DDA3937_RS11775 at 2676.918 kb on + strand, within DDA3937_RS11775 at 2677.070 kb on + strand at 2677.071 kb on - strand at 2677.071 kb on - strand at 2677.134 kb on + strand at 2677.134 kb on + strand at 2677.145 kb on + strand at 2677.150 kb on + strand at 2677.150 kb on + strand at 2677.150 kb on + strand at 2677.150 kb on + strand at 2677.173 kb on + strand at 2677.173 kb on + strand at 2677.173 kb on + strand at 2677.173 kb on + strand at 2677.174 kb on - strand at 2677.174 kb on - strand at 2677.178 kb on - strand at 2677.266 kb on + strand at 2677.342 kb on + strand at 2677.342 kb on + strand at 2677.343 kb on - strand at 2677.395 kb on + strand, within DDA3937_RS11780 at 2677.395 kb on + strand, within DDA3937_RS11780 at 2677.396 kb on - strand, within DDA3937_RS11780 at 2677.396 kb on - strand, within DDA3937_RS11780 at 2677.427 kb on + strand, within DDA3937_RS11780 at 2677.428 kb on - strand, within DDA3937_RS11780 at 2677.556 kb on - strand, within DDA3937_RS11780 at 2677.557 kb on + strand, within DDA3937_RS11780 at 2677.558 kb on - strand, within DDA3937_RS11780 at 2677.558 kb on - strand, within DDA3937_RS11780 at 2677.558 kb on - strand, within DDA3937_RS11780 at 2677.572 kb on + strand, within DDA3937_RS11780 at 2677.572 kb on + strand at 2677.573 kb on - strand, within DDA3937_RS11780 at 2677.686 kb on + strand at 2677.754 kb on - strand, within DDA3937_RS11780 at 2677.839 kb on + strand, within DDA3937_RS11780 at 2677.839 kb on + strand, within DDA3937_RS11780 at 2677.840 kb on - strand, within DDA3937_RS11780 at 2677.845 kb on + strand, within DDA3937_RS11780 at 2677.845 kb on + strand, within DDA3937_RS11780 at 2677.845 kb on + strand, within DDA3937_RS11780 at 2677.845 kb on + strand, within DDA3937_RS11780 at 2677.845 kb on + strand, within DDA3937_RS11780 at 2677.845 kb on + strand, within DDA3937_RS11780 at 2677.845 kb on + strand, within DDA3937_RS11780 at 2677.846 kb on - strand, within DDA3937_RS11780 at 2677.846 kb on - strand, within DDA3937_RS11780 at 2677.846 kb on - strand, within DDA3937_RS11780 at 2677.846 kb on - strand, within DDA3937_RS11780 at 2678.059 kb on + strand at 2678.060 kb on - strand at 2678.060 kb on - strand at 2678.060 kb on - strand at 2678.069 kb on - strand at 2678.069 kb on - strand at 2678.092 kb on + strand at 2678.092 kb on + strand at 2678.093 kb on - strand at 2678.093 kb on - strand at 2678.105 kb on - strand at 2678.105 kb on - strand at 2678.105 kb on - strand at 2678.105 kb on - strand at 2678.196 kb on - strand at 2678.196 kb on - strand at 2678.233 kb on + strand, within DDA3937_RS11785 at 2678.234 kb on - strand, within DDA3937_RS11785 at 2678.234 kb on - strand, within DDA3937_RS11785 at 2678.677 kb on + strand, within DDA3937_RS11785 at 2678.678 kb on - strand, within DDA3937_RS11785 at 2678.683 kb on - strand, within DDA3937_RS11785 at 2678.710 kb on - strand, within DDA3937_RS11785 at 2678.815 kb on + strand, within DDA3937_RS11785 at 2678.816 kb on - strand, within DDA3937_RS11785 at 2678.977 kb on - strand, within DDA3937_RS11785 at 2679.015 kb on - strand, within DDA3937_RS11785
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 2,676,315 + -1.4 2,676,316 - -0.1 2,676,522 - DDA3937_RS11775 0.31 -0.3 2,676,522 - DDA3937_RS11775 0.31 -2.0 2,676,623 + DDA3937_RS11775 0.42 -0.4 2,676,646 + DDA3937_RS11775 0.44 -1.1 2,676,647 - DDA3937_RS11775 0.44 +0.6 2,676,660 + DDA3937_RS11775 0.46 +0.5 2,676,660 + DDA3937_RS11775 0.46 +0.1 2,676,660 + DDA3937_RS11775 0.46 -0.5 2,676,660 + DDA3937_RS11775 0.46 -1.4 2,676,660 + DDA3937_RS11775 0.46 +2.2 2,676,661 - DDA3937_RS11775 0.46 -0.9 2,676,662 + DDA3937_RS11775 0.46 -0.9 2,676,662 + DDA3937_RS11775 0.46 -0.7 2,676,662 + DDA3937_RS11775 0.46 -0.5 2,676,663 - DDA3937_RS11775 0.46 -2.0 2,676,663 - DDA3937_RS11775 0.46 -1.1 2,676,663 - DDA3937_RS11775 0.46 +0.8 2,676,755 + DDA3937_RS11775 0.56 +0.7 2,676,755 + DDA3937_RS11775 0.56 -0.3 2,676,918 + DDA3937_RS11775 0.74 +1.7 2,677,070 + +0.1 2,677,071 - -1.5 2,677,071 - -2.8 2,677,134 + +0.1 2,677,134 + +0.5 2,677,145 + -0.9 2,677,150 + -0.5 2,677,150 + -1.5 2,677,150 + -1.5 2,677,150 + -1.7 2,677,173 + -1.5 2,677,173 + -0.5 2,677,173 + +0.9 2,677,173 + -0.9 2,677,174 - +0.5 2,677,174 - -1.5 2,677,178 - -1.5 2,677,266 + -1.1 2,677,342 + +0.3 2,677,342 + -3.8 2,677,343 - -1.1 2,677,395 + DDA3937_RS11780 0.16 -1.1 2,677,395 + DDA3937_RS11780 0.16 -0.7 2,677,396 - DDA3937_RS11780 0.16 -1.4 2,677,396 - DDA3937_RS11780 0.16 +0.5 2,677,427 + DDA3937_RS11780 0.20 +4.0 2,677,428 - DDA3937_RS11780 0.20 -0.6 2,677,556 - DDA3937_RS11780 0.36 -2.4 2,677,557 + DDA3937_RS11780 0.36 -1.0 2,677,558 - DDA3937_RS11780 0.36 -0.9 2,677,558 - DDA3937_RS11780 0.36 -2.4 2,677,558 - DDA3937_RS11780 0.36 -1.4 2,677,572 + DDA3937_RS11780 0.38 -1.9 2,677,572 + -0.1 2,677,573 - DDA3937_RS11780 0.38 -0.1 2,677,686 + +0.5 2,677,754 - DDA3937_RS11780 0.60 -0.1 2,677,839 + DDA3937_RS11780 0.71 +0.9 2,677,839 + DDA3937_RS11780 0.71 -0.9 2,677,840 - DDA3937_RS11780 0.71 +0.3 2,677,845 + DDA3937_RS11780 0.72 +2.5 2,677,845 + DDA3937_RS11780 0.72 +0.5 2,677,845 + DDA3937_RS11780 0.72 +1.9 2,677,845 + DDA3937_RS11780 0.72 +0.5 2,677,845 + DDA3937_RS11780 0.72 -0.9 2,677,845 + DDA3937_RS11780 0.72 -0.5 2,677,845 + DDA3937_RS11780 0.72 -2.0 2,677,846 - DDA3937_RS11780 0.72 -0.2 2,677,846 - DDA3937_RS11780 0.72 -0.1 2,677,846 - DDA3937_RS11780 0.72 -0.5 2,677,846 - DDA3937_RS11780 0.72 -0.9 2,678,059 + +0.5 2,678,060 - -0.4 2,678,060 - -2.9 2,678,060 - +1.6 2,678,069 - -1.5 2,678,069 - +0.3 2,678,092 + +0.1 2,678,092 + +0.8 2,678,093 - +0.7 2,678,093 - -1.2 2,678,105 - +1.1 2,678,105 - -0.9 2,678,105 - -1.9 2,678,105 - +0.4 2,678,196 - -0.9 2,678,196 - -1.1 2,678,233 + DDA3937_RS11785 0.11 -0.9 2,678,234 - DDA3937_RS11785 0.11 +0.6 2,678,234 - DDA3937_RS11785 0.11 -1.5 2,678,677 + DDA3937_RS11785 0.49 -0.1 2,678,678 - DDA3937_RS11785 0.49 -1.2 2,678,683 - DDA3937_RS11785 0.49 +1.0 2,678,710 - DDA3937_RS11785 0.51 +0.5 2,678,815 + DDA3937_RS11785 0.60 +1.1 2,678,816 - DDA3937_RS11785 0.60 -0.3 2,678,977 - DDA3937_RS11785 0.74 +2.1 2,679,015 - DDA3937_RS11785 0.77 +1.5
Or see this region's nucleotide sequence