Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11745

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,668,160	+		DDA3937_RS11740	0.80	-0.2
2,668,178	+		DDA3937_RS11740	0.81	+1.9
2,668,553	-				+2.9
2,668,565	+				+1.5
2,668,566	-				-0.9
2,668,566	-				-2.0
2,668,566	-				+0.2
2,668,566	-				-2.5
2,668,580	+				-3.0
2,668,580	+				+1.2
2,668,581	-				+0.1
2,668,593	+				-0.9
2,668,594	-				+0.2
2,668,598	-				-1.0
2,668,649	-				-0.5
2,668,651	+				-0.1
2,668,651	+				+2.5
2,668,726	+				-1.7
2,668,727	-				+1.3
2,668,729	+				-2.5
2,668,730	-				-0.9
2,668,738	-				-0.5
2,668,771	-				+1.3
2,668,880	+				-1.2
2,668,880	+				-2.9
2,668,940	+				+0.1
2,668,941	-				+1.2
2,668,941	-				+0.6
2,668,941	-				-0.2
2,668,941	-				-0.5
2,668,942	+				-1.9
2,668,942	+				+0.7
2,668,947	-				+0.3
2,668,947	-				+1.9
2,668,947	-				-1.9
2,668,947	-				+0.5
2,668,955	+				+2.0
2,668,955	+				-0.5
2,668,956	-				-1.4
2,669,002	-				-0.4
2,669,002	-				-0.5
2,669,002	-				-1.8
2,669,002	-				-2.4
2,669,089	+				-0.7
2,669,089	+				-2.2
2,669,089	+				-1.5
2,669,090	-				-0.1
2,669,090	-				-0.9
2,669,092	-				-1.1
2,669,141	+				-1.5
2,669,141	+				-1.5
2,669,145	-				-2.5
2,669,232	+				-0.5
2,669,232	+				-0.5
2,669,279	-		DDA3937_RS11745	0.11	-1.1
2,669,304	+		DDA3937_RS11745	0.12	-0.1
2,669,394	+		DDA3937_RS11745	0.17	-1.9
2,669,419	+		DDA3937_RS11745	0.18	+1.6
2,669,419	+		DDA3937_RS11745	0.18	-0.1
2,669,419	+		DDA3937_RS11745	0.18	+1.9
2,669,419	+		DDA3937_RS11745	0.18	+0.3
2,669,420	-		DDA3937_RS11745	0.18	-1.1
2,669,420	-		DDA3937_RS11745	0.18	-2.1
2,669,421	+		DDA3937_RS11745	0.18	+2.2
2,669,421	+		DDA3937_RS11745	0.18	-0.5
2,669,421	+		DDA3937_RS11745	0.18	-1.9
2,669,421	+		DDA3937_RS11745	0.18	+1.9
2,669,421	+		DDA3937_RS11745	0.18	+0.7
2,669,422	-		DDA3937_RS11745	0.18	+1.6
2,669,422	-		DDA3937_RS11745	0.18	-1.1
2,669,422	-		DDA3937_RS11745	0.18	-2.0
2,669,422	-		DDA3937_RS11745	0.18	-1.7
2,669,493	+				-0.1
2,669,558	+		DDA3937_RS11745	0.25	+1.8
2,669,558	+		DDA3937_RS11745	0.25	-0.0
2,669,559	-		DDA3937_RS11745	0.25	+2.3
2,669,571	+		DDA3937_RS11745	0.26	+2.4
2,669,571	+		DDA3937_RS11745	0.26	-3.4
2,669,572	-		DDA3937_RS11745	0.26	-3.0
2,669,572	-		DDA3937_RS11745	0.26	-0.7
2,669,572	-		DDA3937_RS11745	0.26	-0.9
2,669,575	+		DDA3937_RS11745	0.26	+0.1
2,669,576	-		DDA3937_RS11745	0.26	-1.9
2,669,576	-		DDA3937_RS11745	0.26	+1.0
2,669,576	-		DDA3937_RS11745	0.26	-0.9
2,669,576	-		DDA3937_RS11745	0.26	-0.5
2,669,576	-		DDA3937_RS11745	0.26	+2.0
2,669,576	-		DDA3937_RS11745	0.26	-0.9
2,669,576	-		DDA3937_RS11745	0.26	-0.8
2,669,576	-		DDA3937_RS11745	0.26	+0.5
2,669,576	-				+0.9
2,669,710	+		DDA3937_RS11745	0.33	+2.7
2,669,710	+		DDA3937_RS11745	0.33	-1.1
2,669,764	+		DDA3937_RS11745	0.36	+1.3
2,669,764	+		DDA3937_RS11745	0.36	-1.4
2,669,764	+		DDA3937_RS11745	0.36	-0.0
2,669,765	-		DDA3937_RS11745	0.36	+0.9
2,669,765	-		DDA3937_RS11745	0.36	-0.2
2,669,785	+		DDA3937_RS11745	0.37	-0.9
2,669,785	+		DDA3937_RS11745	0.37	-1.4
2,669,785	+		DDA3937_RS11745	0.37	-1.5
2,669,785	+		DDA3937_RS11745	0.37	-0.1
2,669,786	-		DDA3937_RS11745	0.37	-1.2
2,669,786	-		DDA3937_RS11745	0.37	-2.4
2,669,786	-		DDA3937_RS11745	0.37	+2.0
2,669,797	+		DDA3937_RS11745	0.37	+0.4
2,669,885	+		DDA3937_RS11745	0.42	+3.6
2,669,885	+		DDA3937_RS11745	0.42	+0.8
2,669,886	-		DDA3937_RS11745	0.42	+1.2
2,669,921	-		DDA3937_RS11745	0.44	+1.7
2,669,950	-		DDA3937_RS11745	0.45	-1.4
2,669,950	-		DDA3937_RS11745	0.45	-0.8
2,669,994	+		DDA3937_RS11745	0.47	-0.9
2,670,128	+		DDA3937_RS11745	0.54	-0.8
2,670,129	-		DDA3937_RS11745	0.54	+3.6
2,670,136	-		DDA3937_RS11745	0.55	+0.4
2,670,136	-		DDA3937_RS11745	0.55	-1.1
2,670,952	-				-0.5
2,671,021	+				-1.1
2,671,021	+				-2.5
2,671,030	-				+1.5
2,671,044	-				+0.5
2,671,123	+				-0.0
2,671,124	-				+1.2
2,671,124	-				-0.4
2,671,124	-				+1.4
2,671,233	+				-1.2
2,671,233	+				-1.1
2,671,233	+				+2.3
2,671,234	-				-3.4
2,671,234	-				-1.9
2,671,262	+				+0.7
2,671,303	+				-0.1
2,671,303	+				+1.1
2,671,303	+				-2.9
2,671,304	-				+4.0
2,671,304	-				-0.9
2,671,304	-				-1.4
2,671,318	-				-0.2
2,671,318	-				-1.5
2,671,318	-				-0.7
2,671,321	+				+0.5
2,671,321	+				+0.3
2,671,321	+				-1.7
2,671,322	-				-0.5
2,671,322	-				+1.5
2,671,322	-				+1.5
2,671,340	-				-0.5
2,671,340	-				+0.7
2,671,340	-				+0.1
2,671,357	+				-2.4
2,671,357	+				-0.1
2,671,357	+				+2.0
2,671,357	+				+0.6
2,671,358	-				-1.7
2,671,358	-				+1.8
2,671,375	+				+1.2
2,671,375	+				-1.1
2,671,375	+				-0.5
2,671,375	+				-0.5
2,671,376	-				-2.4
2,671,390	-				+2.8
2,671,399	+				+0.6
2,671,422	+				+3.7
2,671,422	+				-2.9
2,671,422	+				+0.7
2,671,422	+				+0.3
2,671,423	-				-2.4
2,671,570	+		DDA3937_RS11750	0.18	-3.1
2,671,571	-		DDA3937_RS11750	0.18	-0.0
2,671,789	+		DDA3937_RS11750	0.44	-0.9
2,671,790	-		DDA3937_RS11750	0.44	-1.5
2,671,790	-		DDA3937_RS11750	0.44	+0.1
2,671,844	+		DDA3937_RS11750	0.51	-1.4
2,671,970	-		DDA3937_RS11750	0.66	-0.1
2,671,996	+		DDA3937_RS11750	0.69	-2.5
2,671,996	+		DDA3937_RS11750	0.69	-2.0
2,671,996	+		DDA3937_RS11750	0.69	-1.7