Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11000

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS10995 and DDA3937_RS11000 are separated by 209 nucleotidesDDA3937_RS11000 and DDA3937_RS11005 are separated by 3 nucleotides DDA3937_RS10995: DDA3937_RS10995 - glutamyl-tRNA reductase, at 2,480,947 to 2,482,203 _RS10995 DDA3937_RS11000: DDA3937_RS11000 - lipoprotein localization protein LolB, at 2,482,413 to 2,483,033 _RS11000 DDA3937_RS11005: DDA3937_RS11005 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 2,483,037 to 2,483,909 _RS11005 Position (kb) 2482 2483 2484Strain fitness (log2 ratio) -2 -1 0 1 2at 2482.228 kb on - strandat 2482.228 kb on - strandat 2482.228 kb on - strandat 2482.228 kb on - strandat 2482.256 kb on - strandat 2482.256 kb on - strandat 2482.295 kb on + strandat 2482.295 kb on + strandat 2482.296 kb on - strandat 2482.296 kb on - strandat 2482.296 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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2,482,228 - +1.1
2,482,228 - -2.3
2,482,228 - -1.0
2,482,228 - -1.1
2,482,256 - +0.1
2,482,256 - -2.1
2,482,295 + +1.9
2,482,295 + -1.5
2,482,296 - +0.2
2,482,296 - +0.8
2,482,296 - +0.3

Or see this region's nucleotide sequence