Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10780

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,423,254	+		DDA3937_RS10775	0.13	-0.1
2,423,255	-		DDA3937_RS10775	0.13	-2.0
2,423,255	-		DDA3937_RS10775	0.13	-0.5
2,423,312	+		DDA3937_RS10775	0.22	-0.5
2,423,313	-		DDA3937_RS10775	0.22	+1.1
2,423,474	-		DDA3937_RS10775	0.48	-1.1
2,423,474	-		DDA3937_RS10775	0.48	-0.2
2,423,610	-		DDA3937_RS10775	0.70	-1.9
2,423,610	-		DDA3937_RS10775	0.70	-2.2
2,423,610	-				+0.5
2,423,610	-		DDA3937_RS10775	0.70	+1.3
2,423,614	+		DDA3937_RS10775	0.70	-1.5
2,423,614	+		DDA3937_RS10775	0.70	-3.1
2,423,614	+		DDA3937_RS10775	0.70	-2.3
2,423,614	+		DDA3937_RS10775	0.70	-1.7
2,423,614	+		DDA3937_RS10775	0.70	-3.0
2,423,615	-		DDA3937_RS10775	0.71	+0.1
2,423,615	-		DDA3937_RS10775	0.71	-2.9
2,423,615	-		DDA3937_RS10775	0.71	-1.1
2,423,615	-		DDA3937_RS10775	0.71	+0.5
2,423,615	-		DDA3937_RS10775	0.71	+0.0
2,423,622	+		DDA3937_RS10775	0.72	-1.5
2,423,622	+		DDA3937_RS10775	0.72	-2.1
2,423,622	+		DDA3937_RS10775	0.72	-1.1
2,423,622	+		DDA3937_RS10775	0.72	-1.1
2,423,622	+		DDA3937_RS10775	0.72	-0.9
2,423,623	-		DDA3937_RS10775	0.72	-2.7
2,423,623	-		DDA3937_RS10775	0.72	+2.5
2,423,623	-		DDA3937_RS10775	0.72	-3.7
2,423,623	-		DDA3937_RS10775	0.72	-2.0
2,423,623	-		DDA3937_RS10775	0.72	+0.9
2,423,659	+		DDA3937_RS10775	0.78	-2.0
2,423,659	+		DDA3937_RS10775	0.78	-0.7
2,423,659	+		DDA3937_RS10775	0.78	-1.7
2,423,659	+		DDA3937_RS10775	0.78	-1.8
2,423,659	+		DDA3937_RS10775	0.78	-1.0
2,423,660	-				+0.5
2,423,660	-		DDA3937_RS10775	0.78	-0.4
2,423,660	-		DDA3937_RS10775	0.78	+1.9
2,423,663	+		DDA3937_RS10775	0.78	-2.2
2,423,663	+		DDA3937_RS10775	0.78	-2.4
2,423,663	+		DDA3937_RS10775	0.78	-2.2
2,423,664	-		DDA3937_RS10775	0.78	-0.7
2,423,664	-		DDA3937_RS10775	0.78	+2.6
2,423,664	-		DDA3937_RS10775	0.78	+0.3
2,423,664	-		DDA3937_RS10775	0.78	-3.7
2,423,665	+		DDA3937_RS10775	0.79	-0.9
2,423,665	+		DDA3937_RS10775	0.79	-2.4
2,423,665	+		DDA3937_RS10775	0.79	-0.1
2,423,665	+		DDA3937_RS10775	0.79	-0.3
2,423,665	+		DDA3937_RS10775	0.79	-1.7
2,423,665	+		DDA3937_RS10775	0.79	-1.1
2,423,665	+		DDA3937_RS10775	0.79	-1.7
2,423,666	-		DDA3937_RS10775	0.79	-3.1
2,423,666	-		DDA3937_RS10775	0.79	-2.4
2,423,666	-		DDA3937_RS10775	0.79	-1.1
2,423,800	-				-0.1
2,423,800	-				+0.9
2,423,829	+				-0.1
2,423,829	+				+0.2
2,423,830	-				-1.7
2,423,830	-				-0.9
2,423,830	-				-1.4
2,423,830	-				+1.3
2,423,830	-				+0.9
2,423,830	-				+0.8
2,423,831	+				-0.1
2,423,831	+				+0.9
2,423,831	+				-0.0
2,423,831	+				-3.3
2,423,832	-				+1.5
2,423,832	-				-1.5
2,423,832	-				+0.9
2,423,832	-				+0.5
2,423,832	-				+1.9
2,423,832	-				-0.9
2,423,832	-				+0.5
2,423,832	-				+1.5
2,423,832	-				+1.3
2,423,832	-				-1.9
2,423,832	-				-0.8
2,423,832	-				+0.5
2,423,832	-				-0.1
2,423,832	-				-0.5
2,423,841	+				+1.2
2,423,842	-				-0.1
2,423,883	+				+2.5
2,423,884	-				-2.8
2,423,934	+				-0.9
2,423,934	+				+2.4
2,423,935	-				-2.0
2,423,940	+				+0.5
2,424,156	-				-0.4
2,424,173	-				-0.1
2,424,277	+				-2.9
2,424,323	+		DDA3937_RS10780	0.15	+0.0
2,424,324	-		DDA3937_RS10780	0.15	-2.4
2,424,324	-		DDA3937_RS10780	0.15	+1.2
2,424,338	-		DDA3937_RS10780	0.17	-2.2
2,424,375	+		DDA3937_RS10780	0.24	+0.4
2,424,376	-		DDA3937_RS10780	0.24	+0.5
2,424,509	-		DDA3937_RS10780	0.48	-0.9
2,424,549	+		DDA3937_RS10780	0.55	+0.9
2,424,550	-		DDA3937_RS10780	0.55	+1.5
2,424,550	-		DDA3937_RS10780	0.55	-0.9
2,424,610	+		DDA3937_RS10780	0.66	+2.2
2,424,610	+		DDA3937_RS10780	0.66	+1.3
2,424,610	+		DDA3937_RS10780	0.66	+1.0
2,424,611	-		DDA3937_RS10780	0.66	-1.9
2,424,611	-				-0.5
2,424,611	-		DDA3937_RS10780	0.66	-2.4
2,424,611	-		DDA3937_RS10780	0.66	-3.7
2,424,845	+				-1.5
2,424,845	+				+1.0
2,424,845	+				+0.7
2,424,845	+				-0.9
2,424,845	+				+2.0
2,424,845	+				+2.1
2,424,845	+				-1.9
2,424,845	+				+2.1
2,424,845	+				-0.5
2,424,845	+				+0.5
2,424,845	+				+1.1
2,424,845	+				+1.5
2,424,845	+				+1.6
2,424,846	-				+0.3
2,424,846	-				+0.1
2,424,846	-				-2.5
2,424,846	-				-3.0
2,424,846	-				-0.6
2,424,846	-				-2.2
2,424,846	-				+0.2
2,424,846	-				+1.2
2,424,846	-				+0.5
2,424,846	-				-1.7
2,424,846	-				+1.0
2,424,846	-				-2.7
2,424,846	-				-0.3
2,424,847	+				+0.9
2,424,847	+				-0.1
2,424,847	+				-0.2
2,424,847	+				+3.1
2,424,847	+				-0.1
2,424,847	+				-1.3
2,424,847	+				-1.7
2,424,847	+				+2.0
2,424,847	+				-0.5
2,424,847	+				+0.3
2,424,848	-				+0.4
2,424,848	-				-0.1
2,424,848	-				+2.9
2,424,848	-				+2.4
2,424,848	-				+0.1
2,424,848	-				-0.7
2,424,848	-				-1.7
2,424,848	-				+0.9
2,424,848	-				+0.9
2,424,848	-				-1.3
2,424,848	-				-0.5
2,424,848	-				-1.5
2,424,926	-				-0.1
2,424,932	-				+1.5
2,424,943	-				-0.1
2,424,943	-				-0.1
2,424,946	+				+0.9
2,424,946	+				-0.5
2,424,946	+				+0.1
2,424,946	+				+0.7
2,424,946	+				+1.2
2,424,946	+				-0.3
2,424,946	+				+0.2
2,424,946	+				+1.0
2,424,947	-				-2.1
2,424,947	-				-2.6
2,424,947	-				+0.7
2,424,947	-				+0.7
2,424,947	-				+1.8
2,424,993	+				-3.0
2,424,994	-				+1.2
2,424,997	+				-2.2
2,424,998	-				+1.7
2,425,010	+				-2.1
2,425,010	+				-2.0
2,425,010	+				-2.0
2,425,011	-				+0.7
2,425,011	-				+0.1
2,425,011	-				+3.3
2,425,011	-				+1.1
2,425,014	+				+1.6
2,425,014	+				-1.5
2,425,014	+				+2.5
2,425,015	-				-2.1
2,425,015	-				+1.9
2,425,015	-				+0.1
2,425,020	+				-1.7
2,425,020	+				-0.1
2,425,020	+				-0.1
2,425,020	+				-0.1
2,425,020	+				-1.1
2,425,020	+				+0.7
2,425,020	+				-0.9
2,425,021	-				-0.1
2,425,021	-				-0.4
2,425,021	-				+0.5
2,425,036	+				-0.1
2,425,036	+				+0.0
2,425,102	+				-0.9
2,425,115	+				+1.3
2,425,147	-				-1.5
2,425,157	+				-3.7
2,425,196	+		DDA3937_RS10785	0.13	+1.0
2,425,197	-		DDA3937_RS10785	0.13	-2.7
2,425,289	+		DDA3937_RS10785	0.21	-0.9
2,425,289	+		DDA3937_RS10785	0.21	-1.6
2,425,415	+		DDA3937_RS10785	0.32	+0.2
2,425,415	+		DDA3937_RS10785	0.32	-0.3
2,425,416	-		DDA3937_RS10785	0.33	+0.7
2,425,416	-		DDA3937_RS10785	0.33	+0.5
2,425,416	-		DDA3937_RS10785	0.33	-0.5
2,425,416	-		DDA3937_RS10785	0.33	-0.1
2,425,418	-		DDA3937_RS10785	0.33	-0.7
2,425,418	-		DDA3937_RS10785	0.33	-2.3
2,425,502	-		DDA3937_RS10785	0.40	-1.5
2,425,502	-		DDA3937_RS10785	0.40	-1.9
2,425,559	+		DDA3937_RS10785	0.46	+0.0
2,425,560	-		DDA3937_RS10785	0.46	+1.0
2,425,560	-		DDA3937_RS10785	0.46	-1.3
2,425,563	+		DDA3937_RS10785	0.46	+0.2
2,425,563	+		DDA3937_RS10785	0.46	-1.3
2,425,563	+		DDA3937_RS10785	0.46	-1.3
2,425,564	-		DDA3937_RS10785	0.46	-1.1
2,425,652	+		DDA3937_RS10785	0.54	-0.1
2,425,653	-		DDA3937_RS10785	0.54	+3.5
2,425,653	-		DDA3937_RS10785	0.54	-0.9
2,425,664	+		DDA3937_RS10785	0.55	-1.5
2,425,664	+		DDA3937_RS10785	0.55	-1.5
2,425,665	-		DDA3937_RS10785	0.55	+1.2
2,425,697	+		DDA3937_RS10785	0.58	+0.5
2,425,698	-		DDA3937_RS10785	0.58	+3.6
2,425,701	+		DDA3937_RS10785	0.58	-2.1
2,425,702	-		DDA3937_RS10785	0.58	-1.3
2,425,702	-		DDA3937_RS10785	0.58	-2.4