Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10290

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,318,172	+		DDA3937_RS10285	0.17	-0.1
2,318,215	+		DDA3937_RS10285	0.21	+1.4
2,318,295	+		DDA3937_RS10285	0.29	-0.6
2,318,295	+		DDA3937_RS10285	0.29	-1.6
2,318,296	-		DDA3937_RS10285	0.29	+1.1
2,318,296	-		DDA3937_RS10285	0.29	+1.4
2,318,555	+		DDA3937_RS10285	0.54	+0.5
2,318,555	+		DDA3937_RS10285	0.54	-0.9
2,318,555	+		DDA3937_RS10285	0.54	-1.1
2,318,556	-		DDA3937_RS10285	0.55	+1.6
2,318,610	+		DDA3937_RS10285	0.60	-0.5
2,318,610	+		DDA3937_RS10285	0.60	+0.4
2,318,611	-		DDA3937_RS10285	0.60	-2.0
2,318,611	-		DDA3937_RS10285	0.60	-1.6
2,318,784	+		DDA3937_RS10285	0.77	+0.5
2,318,784	+		DDA3937_RS10285	0.77	-0.7
2,318,784	+		DDA3937_RS10285	0.77	+0.7
2,318,784	+		DDA3937_RS10285	0.77	+2.3
2,318,785	-		DDA3937_RS10285	0.77	-0.3
2,318,785	-		DDA3937_RS10285	0.77	+0.1
2,318,785	-		DDA3937_RS10285	0.77	+2.3
2,318,785	-		DDA3937_RS10285	0.77	+0.7
2,318,785	-		DDA3937_RS10285	0.77	+0.3
2,318,785	-		DDA3937_RS10285	0.77	-1.4
2,318,785	-		DDA3937_RS10285	0.77	-1.1
2,318,834	-		DDA3937_RS10285	0.82	+0.4
2,318,857	+		DDA3937_RS10285	0.84	+2.0
2,318,858	-		DDA3937_RS10285	0.84	-0.1
2,318,859	+		DDA3937_RS10285	0.84	-0.9
2,318,859	+				+1.4
2,318,859	+		DDA3937_RS10285	0.84	+0.4
2,318,859	+		DDA3937_RS10285	0.84	+0.4
2,318,859	+		DDA3937_RS10285	0.84	+0.1
2,318,949	+				-0.2
2,318,949	+				-2.5
2,318,949	+				-1.4
2,318,950	-				-0.0
2,318,950	-				-2.3
2,318,950	-				+0.4
2,318,991	+				-0.6
2,318,991	+				+1.4
2,319,000	+				+0.6
2,319,000	+				+4.5
2,319,000	+				-0.6
2,319,000	+				+2.2
2,319,001	-				+1.6
2,319,001	-				+1.4
2,319,023	+				-2.0
2,319,023	+				-0.3
2,319,023	+				-0.2
2,319,023	+				+2.2
2,319,049	-				-1.6
2,319,082	+				+0.7
2,319,082	+				+1.0
2,319,083	-				+1.3
2,319,273	-				+1.2
2,319,295	-				-1.6
2,319,351	+		DDA3937_RS10290	0.11	-1.7
2,319,367	-		DDA3937_RS10290	0.12	+3.3
2,319,367	-		DDA3937_RS10290	0.12	-0.1
2,319,491	+		DDA3937_RS10290	0.19	-1.7
2,319,492	-		DDA3937_RS10290	0.19	+1.3
2,319,535	+		DDA3937_RS10290	0.21	-1.1
2,319,535	+		DDA3937_RS10290	0.21	+0.1
2,319,535	+		DDA3937_RS10290	0.21	-1.7
2,319,535	+		DDA3937_RS10290	0.21	-0.1
2,319,535	+				+0.4
2,319,536	-		DDA3937_RS10290	0.21	-2.5
2,319,536	-		DDA3937_RS10290	0.21	-0.6
2,319,536	-		DDA3937_RS10290	0.21	+1.7
2,319,650	+		DDA3937_RS10290	0.27	-1.9
2,319,963	+		DDA3937_RS10290	0.44	-1.8
2,320,059	+		DDA3937_RS10290	0.49	-2.3
2,320,059	+		DDA3937_RS10290	0.49	-2.0
2,320,059	+		DDA3937_RS10290	0.49	+2.0
2,320,059	+		DDA3937_RS10290	0.49	-0.0
2,320,060	-		DDA3937_RS10290	0.50	-2.3
2,320,060	-		DDA3937_RS10290	0.50	-1.7
2,320,060	-		DDA3937_RS10290	0.50	-0.9
2,320,060	-		DDA3937_RS10290	0.50	-2.8
2,320,155	-		DDA3937_RS10290	0.55	-0.9
2,320,155	-		DDA3937_RS10290	0.55	-2.0
2,320,277	-		DDA3937_RS10290	0.61	-1.9
2,320,284	+		DDA3937_RS10290	0.62	+0.4
2,320,377	+		DDA3937_RS10290	0.67	-2.4
2,320,377	+		DDA3937_RS10290	0.67	-0.9
2,320,378	-		DDA3937_RS10290	0.67	+0.4
2,320,378	-		DDA3937_RS10290	0.67	-2.1
2,320,378	-		DDA3937_RS10290	0.67	-0.9
2,320,378	-		DDA3937_RS10290	0.67	-0.9
2,320,378	-		DDA3937_RS10290	0.67	-2.1
2,320,378	-		DDA3937_RS10290	0.67	+1.1
2,320,435	-		DDA3937_RS10290	0.70	-0.1
2,320,435	-				+1.4
2,320,435	-		DDA3937_RS10290	0.70	-0.0
2,320,437	+		DDA3937_RS10290	0.70	+1.9
2,320,438	-		DDA3937_RS10290	0.70	-0.9
2,320,438	-		DDA3937_RS10290	0.70	-1.7
2,320,445	-		DDA3937_RS10290	0.70	+1.2
2,320,448	-		DDA3937_RS10290	0.71	-2.9
2,320,472	-		DDA3937_RS10290	0.72	+1.3
2,320,491	+		DDA3937_RS10290	0.73	-1.5
2,320,518	+		DDA3937_RS10290	0.74	-0.9
2,320,518	+		DDA3937_RS10290	0.74	+0.2
2,320,518	+		DDA3937_RS10290	0.74	-0.2
2,320,518	+		DDA3937_RS10290	0.74	-1.9
2,320,521	+		DDA3937_RS10290	0.74	-1.6
2,320,602	+		DDA3937_RS10290	0.79	-1.1
2,320,603	-		DDA3937_RS10290	0.79	-2.0
2,320,603	-		DDA3937_RS10290	0.79	-1.6
2,320,603	-		DDA3937_RS10290	0.79	-2.7
2,320,603	-		DDA3937_RS10290	0.79	-1.3
2,320,792	+		DDA3937_RS10290	0.89	-2.1
2,320,823	+				+0.8
2,320,869	+				-0.1
2,320,870	-				-2.7
2,320,870	-				-0.1
2,320,870	-				-0.9
2,320,870	-				-1.1
2,320,918	+				-1.7
2,320,962	-				-1.1
2,321,124	+				+0.7
2,321,124	+				-0.9
2,321,125	-				-0.9
2,321,135	+				-0.7
2,321,136	-				-0.1
2,321,136	-				-0.6
2,321,139	+				-0.6
2,321,140	-				+0.0
2,321,140	-				+0.8
2,321,188	+				-0.4
2,321,221	-				-0.4
2,321,343	-		DDA3937_RS10295	0.15	-0.7
2,321,343	-		DDA3937_RS10295	0.15	+2.7
2,321,343	-		DDA3937_RS10295	0.15	-2.5
2,321,406	-		DDA3937_RS10295	0.27	-0.9
2,321,646	-		DDA3937_RS10295	0.70	+0.4
2,321,737	+		DDA3937_RS10295	0.87	+2.4
2,321,737	+		DDA3937_RS10295	0.87	-1.6
2,321,738	-		DDA3937_RS10295	0.87	-0.1
2,321,738	-		DDA3937_RS10295	0.87	+1.0
2,321,753	+		DDA3937_RS10295	0.89	+1.4
2,321,802	+				-0.8
2,321,802	+				-1.6
2,321,802	+				-0.1
2,321,802	+				-1.5
2,321,803	-				-1.1
2,321,809	-				+0.9