Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10280

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,316,324	-				+0.5
2,316,354	+				-1.9
2,316,354	+				-0.7
2,316,354	+				-0.6
2,316,355	-				+1.0
2,316,355	-				-0.6
2,316,355	-				+0.8
2,316,355	-				-0.6
2,316,364	+				-2.3
2,316,365	-				-0.7
2,316,365	-				+0.2
2,316,381	-				-0.1
2,316,453	+				+0.4
2,316,453	+				+1.3
2,316,454	-				+3.3
2,316,454	-				+1.3
2,316,454	-				-0.4
2,316,454	-				+3.8
2,316,483	+				-0.6
2,316,562	+		DDA3937_RS10270	0.29	+0.6
2,316,572	+		DDA3937_RS10270	0.31	-0.1
2,316,572	+		DDA3937_RS10270	0.31	+1.9
2,316,620	+		DDA3937_RS10270	0.42	-1.9
2,316,620	+		DDA3937_RS10270	0.42	+0.3
2,316,674	-		DDA3937_RS10270	0.55	+2.3
2,316,703	+		DDA3937_RS10270	0.62	+1.3
2,316,704	-		DDA3937_RS10270	0.63	-1.4
2,316,704	-		DDA3937_RS10270	0.63	+0.1
2,316,704	-		DDA3937_RS10270	0.63	+1.4
2,316,867	-				-0.1
2,316,867	-				-0.6
2,316,867	-				-1.7
2,316,869	+				+0.3
2,316,941	-				+1.0
2,316,950	+				+0.7
2,316,951	-		DDA3937_RS10275	0.10	-0.6
2,316,967	-		DDA3937_RS10275	0.16	+1.4
2,316,967	-		DDA3937_RS10275	0.16	+1.7
2,316,967	-		DDA3937_RS10275	0.16	-1.6
2,317,076	+		DDA3937_RS10275	0.57	+0.5
2,317,077	-		DDA3937_RS10275	0.57	-1.4
2,317,136	+		DDA3937_RS10275	0.79	+0.1
2,317,137	-		DDA3937_RS10275	0.80	-1.2
2,317,148	-		DDA3937_RS10275	0.84	-0.2
2,317,170	-				+1.4
2,317,208	+				-0.6
2,317,208	+				+1.8
2,317,209	-				+3.6
2,317,211	+				-0.6
2,317,212	-				-2.0
2,317,226	+				-1.9
2,317,226	+				+1.4
2,317,226	+				+0.3
2,317,226	+				-2.8
2,317,226	+				+1.3
2,317,227	-				-0.9
2,317,229	+				+0.6
2,317,229	+				-0.8
2,317,229	+				-1.7
2,317,230	-				+1.8
2,317,251	+				-0.3
2,317,251	+				-0.9
2,317,251	+				-1.1
2,317,251	+				-0.0
2,317,300	+				+1.2
2,317,301	-				-0.2
2,317,301	-				-0.4
2,317,468	+		DDA3937_RS10280	0.26	-1.4
2,317,468	+		DDA3937_RS10280	0.26	-3.2
2,317,469	-		DDA3937_RS10280	0.26	-2.1
2,317,469	-		DDA3937_RS10280	0.26	+0.5
2,317,469	-		DDA3937_RS10280	0.26	-1.9
2,317,469	-		DDA3937_RS10280	0.26	+0.4
2,317,469	-		DDA3937_RS10280	0.26	-2.4
2,317,480	+		DDA3937_RS10280	0.28	-1.7
2,317,540	+		DDA3937_RS10280	0.38	-0.6
2,317,540	+		DDA3937_RS10280	0.38	-1.5
2,317,540	+		DDA3937_RS10280	0.38	-0.1
2,317,541	-		DDA3937_RS10280	0.38	+0.9
2,317,541	-		DDA3937_RS10280	0.38	+2.0
2,317,541	-		DDA3937_RS10280	0.38	-1.1
2,317,583	+		DDA3937_RS10280	0.44	+0.1
2,317,583	+		DDA3937_RS10280	0.44	-0.1
2,317,585	+		DDA3937_RS10280	0.45	-1.7
2,317,585	+		DDA3937_RS10280	0.45	-0.6
2,317,585	+		DDA3937_RS10280	0.45	-3.5
2,317,585	+		DDA3937_RS10280	0.45	-0.6
2,317,585	+		DDA3937_RS10280	0.45	-0.6
2,317,585	+		DDA3937_RS10280	0.45	-0.3
2,317,585	+		DDA3937_RS10280	0.45	-2.6
2,317,585	+		DDA3937_RS10280	0.45	+0.0
2,317,585	+		DDA3937_RS10280	0.45	+0.4
2,317,586	-		DDA3937_RS10280	0.45	-0.1
2,317,586	-		DDA3937_RS10280	0.45	-0.6
2,317,586	-		DDA3937_RS10280	0.45	-0.0
2,317,586	-		DDA3937_RS10280	0.45	+0.4
2,317,586	-		DDA3937_RS10280	0.45	+0.4
2,317,586	-		DDA3937_RS10280	0.45	+0.8
2,317,617	+		DDA3937_RS10280	0.50	+2.0
2,317,617	+		DDA3937_RS10280	0.50	+1.1
2,317,617	+		DDA3937_RS10280	0.50	+0.2
2,317,617	+		DDA3937_RS10280	0.50	+0.4
2,317,617	+		DDA3937_RS10280	0.50	+0.8
2,317,618	-		DDA3937_RS10280	0.50	-2.7
2,317,621	-		DDA3937_RS10280	0.50	-0.9
2,317,680	+		DDA3937_RS10280	0.59	-0.1
2,317,680	+		DDA3937_RS10280	0.59	-1.5
2,317,766	+		DDA3937_RS10280	0.73	+0.0
2,317,766	+		DDA3937_RS10280	0.73	+0.1
2,317,766	+		DDA3937_RS10280	0.73	-1.9
2,317,767	-		DDA3937_RS10280	0.73	-0.1
2,317,767	-		DDA3937_RS10280	0.73	-2.1
2,317,767	-		DDA3937_RS10280	0.73	-2.5
2,317,923	+				+0.9
2,317,924	-				-2.0
2,317,940	+				-0.1
2,317,940	+				-0.3
2,317,941	-				+0.3
2,317,941	-				+3.6
2,317,957	+				-0.1
2,318,042	+				-2.1
2,318,042	+				-0.6
2,318,042	+				+0.0
2,318,043	-				+1.4
2,318,081	+				-0.0
2,318,081	+				-1.1
2,318,081	+				-1.7
2,318,088	+				-1.1
2,318,089	-				+2.0
2,318,123	-		DDA3937_RS10285	0.12	-0.6
2,318,172	+		DDA3937_RS10285	0.17	-0.1
2,318,215	+		DDA3937_RS10285	0.21	+1.4
2,318,295	+		DDA3937_RS10285	0.29	-0.6
2,318,295	+		DDA3937_RS10285	0.29	-1.6
2,318,296	-		DDA3937_RS10285	0.29	+1.1
2,318,296	-		DDA3937_RS10285	0.29	+1.4
2,318,555	+		DDA3937_RS10285	0.54	+0.5
2,318,555	+		DDA3937_RS10285	0.54	-0.9
2,318,555	+		DDA3937_RS10285	0.54	-1.1
2,318,556	-		DDA3937_RS10285	0.55	+1.6
2,318,610	+		DDA3937_RS10285	0.60	-0.5
2,318,610	+		DDA3937_RS10285	0.60	+0.4
2,318,611	-		DDA3937_RS10285	0.60	-2.0
2,318,611	-		DDA3937_RS10285	0.60	-1.6
2,318,784	+		DDA3937_RS10285	0.77	+0.5
2,318,784	+		DDA3937_RS10285	0.77	-0.7
2,318,784	+		DDA3937_RS10285	0.77	+0.7
2,318,784	+		DDA3937_RS10285	0.77	+2.3
2,318,785	-		DDA3937_RS10285	0.77	-0.3
2,318,785	-		DDA3937_RS10285	0.77	+0.1
2,318,785	-		DDA3937_RS10285	0.77	+2.3
2,318,785	-		DDA3937_RS10285	0.77	+0.7
2,318,785	-		DDA3937_RS10285	0.77	+0.3
2,318,785	-		DDA3937_RS10285	0.77	-1.4
2,318,785	-		DDA3937_RS10285	0.77	-1.1
2,318,834	-		DDA3937_RS10285	0.82	+0.4
2,318,857	+		DDA3937_RS10285	0.84	+2.0
2,318,858	-		DDA3937_RS10285	0.84	-0.1
2,318,859	+		DDA3937_RS10285	0.84	-0.9
2,318,859	+				+1.4
2,318,859	+		DDA3937_RS10285	0.84	+0.4
2,318,859	+		DDA3937_RS10285	0.84	+0.4
2,318,859	+		DDA3937_RS10285	0.84	+0.1