Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09815

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,213,674	+		DDA3937_RS09805	0.45	+0.4
2,213,674	+		DDA3937_RS09805	0.45	-2.5
2,213,674	+		DDA3937_RS09805	0.45	+1.9
2,213,675	-		DDA3937_RS09805	0.46	+4.1
2,213,675	-		DDA3937_RS09805	0.46	+0.0
2,213,675	-		DDA3937_RS09805	0.46	-1.3
2,213,675	-		DDA3937_RS09805	0.46	-1.4
2,213,675	-		DDA3937_RS09805	0.46	-1.4
2,213,675	-		DDA3937_RS09805	0.46	+2.9
2,213,675	-		DDA3937_RS09805	0.46	+0.9
2,213,677	+		DDA3937_RS09805	0.46	+1.3
2,213,677	+		DDA3937_RS09805	0.46	-2.0
2,213,677	+		DDA3937_RS09805	0.46	-1.9
2,213,677	+		DDA3937_RS09805	0.46	-0.9
2,213,677	+		DDA3937_RS09805	0.46	-0.9
2,213,677	+		DDA3937_RS09805	0.46	-0.6
2,213,677	+		DDA3937_RS09805	0.46	-1.1
2,213,677	+		DDA3937_RS09805	0.46	-1.0
2,213,677	+		DDA3937_RS09805	0.46	+0.8
2,213,677	+		DDA3937_RS09805	0.46	+1.4
2,213,677	+		DDA3937_RS09805	0.46	+0.9
2,213,678	-		DDA3937_RS09805	0.46	+1.0
2,213,678	-		DDA3937_RS09805	0.46	+1.0
2,213,678	-		DDA3937_RS09805	0.46	-0.9
2,213,678	-		DDA3937_RS09805	0.46	-0.3
2,213,678	-		DDA3937_RS09805	0.46	-0.6
2,213,678	-		DDA3937_RS09805	0.46	-0.4
2,213,772	+		DDA3937_RS09805	0.58	-0.1
2,213,809	+		DDA3937_RS09805	0.63	+1.2
2,213,810	-		DDA3937_RS09805	0.63	-0.2
2,213,810	-		DDA3937_RS09805	0.63	-1.0
2,213,810	-		DDA3937_RS09805	0.63	-2.1
2,213,829	-		DDA3937_RS09805	0.66	-3.1
2,213,887	+		DDA3937_RS09805	0.74	-1.2
2,213,887	+		DDA3937_RS09805	0.74	+1.7
2,213,887	+		DDA3937_RS09805	0.74	-1.7
2,213,950	-		DDA3937_RS09805	0.82	+0.5
2,213,999	+		DDA3937_RS09805	0.89	+0.2
2,213,999	+		DDA3937_RS09805	0.89	+1.8
2,213,999	+		DDA3937_RS09805	0.89	-1.3
2,213,999	+		DDA3937_RS09805	0.89	+2.3
2,214,000	-		DDA3937_RS09805	0.89	+1.1
2,214,178	-				+1.4
2,214,206	+				-1.9
2,214,236	-				-0.1
2,214,244	+				+1.4
2,214,253	-				-2.6
2,214,289	-				-0.7
2,214,327	-				-0.3
2,214,336	+				-0.8
2,214,336	+				-2.1
2,214,336	+				-0.9
2,214,336	+				-2.4
2,214,336	+				+0.8
2,214,336	+				+0.1
2,214,336	+				-1.4
2,214,336	+				+0.1
2,214,336	+				+1.0
2,214,337	-				-0.9
2,214,337	-				-0.1
2,214,337	-				+0.4
2,214,337	-				-0.4
2,214,337	-				-0.6
2,214,337	-				-0.5
2,214,337	-				-0.9
2,214,565	+		DDA3937_RS09810	0.84	-0.9
2,214,614	+				-1.9
2,214,614	+				-0.5
2,214,614	+				+0.4
2,214,670	+				-3.4
2,214,671	-				-1.1
2,214,671	-				-2.7
2,214,671	-				-0.1
2,214,690	+				-0.1
2,214,691	-				-0.4
2,214,717	-				-1.7
2,214,807	+		DDA3937_RS09815	0.15	-1.1
2,214,807	+		DDA3937_RS09815	0.15	-1.3
2,214,808	-		DDA3937_RS09815	0.15	+0.0
2,214,808	-		DDA3937_RS09815	0.15	-0.3
2,214,813	-		DDA3937_RS09815	0.16	-1.6
2,214,813	-		DDA3937_RS09815	0.16	-0.1
2,214,849	+		DDA3937_RS09815	0.18	-0.7
2,214,849	+		DDA3937_RS09815	0.18	-1.4
2,214,850	-		DDA3937_RS09815	0.18	-0.6
2,214,850	-		DDA3937_RS09815	0.18	-1.0
2,214,851	+		DDA3937_RS09815	0.19	-0.6
2,214,851	+		DDA3937_RS09815	0.19	-2.6
2,214,851	+		DDA3937_RS09815	0.19	-0.9
2,214,851	+		DDA3937_RS09815	0.19	+1.4
2,214,852	-		DDA3937_RS09815	0.19	-1.4
2,214,852	-		DDA3937_RS09815	0.19	+1.4
2,214,852	-		DDA3937_RS09815	0.19	+0.3
2,214,852	-		DDA3937_RS09815	0.19	-2.0
2,214,852	-		DDA3937_RS09815	0.19	-2.1
2,214,855	+		DDA3937_RS09815	0.19	-1.1
2,214,855	+		DDA3937_RS09815	0.19	+2.4
2,214,855	+		DDA3937_RS09815	0.19	-1.7
2,214,855	+		DDA3937_RS09815	0.19	-1.1
2,214,856	-		DDA3937_RS09815	0.19	-0.9
2,214,856	-		DDA3937_RS09815	0.19	-0.9
2,214,856	-		DDA3937_RS09815	0.19	-2.8
2,214,856	-		DDA3937_RS09815	0.19	+0.8
2,214,856	-		DDA3937_RS09815	0.19	-0.6
2,214,856	-		DDA3937_RS09815	0.19	-2.0
2,214,919	-		DDA3937_RS09815	0.24	-0.1
2,214,919	-		DDA3937_RS09815	0.24	-1.6
2,214,919	-		DDA3937_RS09815	0.24	+2.2
2,214,961	-		DDA3937_RS09815	0.27	-1.6
2,215,070	+		DDA3937_RS09815	0.35	-2.6
2,215,070	+		DDA3937_RS09815	0.35	-2.1
2,215,084	+		DDA3937_RS09815	0.36	-2.4
2,215,129	-		DDA3937_RS09815	0.39	-1.1
2,215,363	-		DDA3937_RS09815	0.56	-1.9
2,215,377	+		DDA3937_RS09815	0.57	-0.7
2,215,377	+		DDA3937_RS09815	0.57	-1.7
2,215,378	-		DDA3937_RS09815	0.57	-1.4
2,215,378	-		DDA3937_RS09815	0.57	-1.6
2,215,378	-		DDA3937_RS09815	0.57	-1.6
2,215,388	+		DDA3937_RS09815	0.58	-1.2
2,215,437	+		DDA3937_RS09815	0.61	+0.4
2,215,437	+		DDA3937_RS09815	0.61	-1.8
2,215,437	+		DDA3937_RS09815	0.61	+0.4
2,215,437	+		DDA3937_RS09815	0.61	+0.7
2,215,438	-		DDA3937_RS09815	0.61	-0.5
2,215,438	-		DDA3937_RS09815	0.61	-1.7
2,215,438	-		DDA3937_RS09815	0.61	-2.0
2,215,438	-		DDA3937_RS09815	0.61	+0.1
2,215,492	+		DDA3937_RS09815	0.65	+2.3
2,215,539	+		DDA3937_RS09815	0.69	-1.4
2,215,539	+		DDA3937_RS09815	0.69	-1.5
2,215,539	+		DDA3937_RS09815	0.69	-1.9
2,215,539	+		DDA3937_RS09815	0.69	-1.7
2,215,540	-		DDA3937_RS09815	0.69	-1.6
2,215,584	+		DDA3937_RS09815	0.72	+0.7
2,215,584	+		DDA3937_RS09815	0.72	-1.6
2,215,584	+		DDA3937_RS09815	0.72	-0.9
2,215,585	-		DDA3937_RS09815	0.72	-1.1
2,215,746	+		DDA3937_RS09815	0.84	-0.8
2,215,746	+		DDA3937_RS09815	0.84	-0.9
2,215,746	+		DDA3937_RS09815	0.84	-2.6
2,215,746	+		DDA3937_RS09815	0.84	-0.9
2,215,746	+		DDA3937_RS09815	0.84	-2.1
2,215,747	-		DDA3937_RS09815	0.84	-1.3
2,215,747	-		DDA3937_RS09815	0.84	-0.6
2,215,747	-		DDA3937_RS09815	0.84	-3.7
2,215,747	-		DDA3937_RS09815	0.84	-1.7
2,215,747	-		DDA3937_RS09815	0.84	-1.9
2,215,747	-		DDA3937_RS09815	0.84	-0.6
2,215,747	-		DDA3937_RS09815	0.84	+1.4
2,215,899	+				-0.7
2,215,900	-				-0.6
2,215,900	-				+1.4
2,215,900	-				+1.8
2,215,963	-				-3.1
2,215,963	-				+0.4
2,215,977	+				+0.8
2,215,978	-				-2.6
2,215,980	-				-1.6
2,215,980	-				-0.1
2,215,980	-				-0.1
2,215,980	-				-2.0
2,215,982	+				-1.4
2,215,982	+				+2.3
2,215,982	+				+0.4
2,215,983	-				-0.9
2,215,983	-				-2.9
2,216,050	+				+2.4
2,216,050	+				-1.8
2,216,051	-				-0.1
2,216,055	-				+0.1
2,216,064	-				-0.4
2,216,068	-				+0.7
2,216,074	+				-2.6
2,216,102	+				-0.4
2,216,102	+				-1.9
2,216,127	-				-1.4
2,216,127	-				+0.4
2,216,383	-				-0.1
2,216,626	+		DDA3937_RS09820	0.36	-0.7
2,216,626	+		DDA3937_RS09820	0.36	+0.8
2,216,626	+		DDA3937_RS09820	0.36	-1.1
2,216,626	+		DDA3937_RS09820	0.36	-0.4
2,216,627	-		DDA3937_RS09820	0.37	-2.0
2,216,627	-		DDA3937_RS09820	0.37	+0.2
2,216,627	-		DDA3937_RS09820	0.37	+2.4
2,216,627	-		DDA3937_RS09820	0.37	+0.5
2,216,629	-		DDA3937_RS09820	0.37	+0.4
2,216,687	+		DDA3937_RS09820	0.41	+1.8
2,216,687	+		DDA3937_RS09820	0.41	-0.1
2,216,808	+		DDA3937_RS09820	0.49	+1.4
2,216,809	-		DDA3937_RS09820	0.49	-1.1
2,216,809	-		DDA3937_RS09820	0.49	-2.1
2,216,809	-		DDA3937_RS09820	0.49	+1.2
2,216,811	+		DDA3937_RS09820	0.49	-1.6
2,216,812	-		DDA3937_RS09820	0.49	-0.6
2,216,812	-		DDA3937_RS09820	0.49	+1.4
2,216,812	-		DDA3937_RS09820	0.49	-1.6
2,216,848	+		DDA3937_RS09820	0.52	+0.1
2,216,848	+		DDA3937_RS09820	0.52	-1.9
2,216,892	+		DDA3937_RS09820	0.55	-1.6
2,216,912	+		DDA3937_RS09820	0.56	-0.6
2,216,912	+		DDA3937_RS09820	0.56	-0.2
2,216,913	-		DDA3937_RS09820	0.57	-2.3
2,216,918	+		DDA3937_RS09820	0.57	+0.9
2,216,918	+		DDA3937_RS09820	0.57	+2.3
2,216,919	-		DDA3937_RS09820	0.57	+1.9