Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09500

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,139,266	+				-1.7
2,139,534	+		DDA3937_RS09495	0.41	-1.4
2,139,535	-		DDA3937_RS09495	0.41	-0.5
2,139,535	-		DDA3937_RS09495	0.41	+1.5
2,139,653	+		DDA3937_RS09495	0.57	+1.0
2,139,653	+		DDA3937_RS09495	0.57	-1.8
2,139,653	+		DDA3937_RS09495	0.57	+1.0
2,139,653	+		DDA3937_RS09495	0.57	-1.9
2,139,653	+		DDA3937_RS09495	0.57	-0.1
2,139,653	+		DDA3937_RS09495	0.57	-1.3
2,139,653	+		DDA3937_RS09495	0.57	-0.5
2,139,653	+		DDA3937_RS09495	0.57	-2.3
2,139,653	+		DDA3937_RS09495	0.57	+0.0
2,139,653	+		DDA3937_RS09495	0.57	-0.1
2,139,653	+		DDA3937_RS09495	0.57	-2.6
2,139,653	+		DDA3937_RS09495	0.57	+0.8
2,139,653	+		DDA3937_RS09495	0.57	-0.4
2,139,654	-		DDA3937_RS09495	0.57	-1.3
2,139,654	-		DDA3937_RS09495	0.57	-1.7
2,139,654	-		DDA3937_RS09495	0.57	-1.7
2,139,654	-		DDA3937_RS09495	0.57	-0.1
2,139,654	-		DDA3937_RS09495	0.57	+1.5
2,139,712	-		DDA3937_RS09495	0.64	-1.5
2,139,722	+		DDA3937_RS09495	0.66	-0.3
2,139,777	+		DDA3937_RS09495	0.73	-1.0
2,139,777	+		DDA3937_RS09495	0.73	+0.5
2,139,777	+		DDA3937_RS09495	0.73	-1.4
2,139,777	+		DDA3937_RS09495	0.73	-0.5
2,139,777	+		DDA3937_RS09495	0.73	+1.8
2,139,778	-		DDA3937_RS09495	0.73	-1.8
2,139,778	-		DDA3937_RS09495	0.73	-1.3
2,139,778	-				+1.5
2,139,778	-		DDA3937_RS09495	0.73	-2.0
2,139,790	+		DDA3937_RS09495	0.75	-2.6
2,139,790	+		DDA3937_RS09495	0.75	+1.5
2,139,791	-		DDA3937_RS09495	0.75	+0.8
2,139,872	+		DDA3937_RS09495	0.86	-1.7
2,139,998	+				-2.1
2,139,999	-				-2.3
2,140,004	+				+0.6
2,140,222	-				-0.3
2,140,228	+				+0.4
2,140,228	+				-0.5
2,140,232	+				-2.6
2,140,232	+				+1.7
2,140,232	+				-1.4
2,140,233	-				-1.8
2,140,233	-				-1.5
2,140,233	-				-2.3
2,140,233	-				-0.1
2,140,255	-				+2.0
2,140,255	-				-1.1
2,140,258	+				-0.1
2,140,258	+				-0.1
2,140,262	-				-2.7
2,140,262	-				-0.9
2,140,262	-				-1.7
2,140,331	+		DDA3937_RS09500	0.12	+0.2
2,140,331	+		DDA3937_RS09500	0.12	-0.3
2,140,331	+		DDA3937_RS09500	0.12	-0.4
2,140,331	+				-0.1
2,140,331	+		DDA3937_RS09500	0.12	-0.8
2,140,331	+		DDA3937_RS09500	0.12	-0.5
2,140,332	-		DDA3937_RS09500	0.12	+0.5
2,140,332	-		DDA3937_RS09500	0.12	+3.3
2,140,332	-		DDA3937_RS09500	0.12	-1.3
2,140,371	+		DDA3937_RS09500	0.18	+2.4
2,140,371	+		DDA3937_RS09500	0.18	-0.9
2,140,383	+		DDA3937_RS09500	0.19	-0.5
2,140,420	+		DDA3937_RS09500	0.25	+1.5
2,140,420	+		DDA3937_RS09500	0.25	-0.4
2,140,421	-		DDA3937_RS09500	0.25	-1.7
2,140,421	-		DDA3937_RS09500	0.25	+0.4
2,140,421	-		DDA3937_RS09500	0.25	+0.7
2,140,428	+				+2.5
2,140,428	+		DDA3937_RS09500	0.26	-2.1
2,140,428	+		DDA3937_RS09500	0.26	-2.3
2,140,429	-		DDA3937_RS09500	0.26	-0.5
2,140,594	-		DDA3937_RS09500	0.51	-1.3
2,140,609	+		DDA3937_RS09500	0.53	-1.4
2,140,610	-		DDA3937_RS09500	0.53	-0.8
2,140,610	-		DDA3937_RS09500	0.53	+1.6
2,140,611	+		DDA3937_RS09500	0.53	-1.3
2,140,611	+		DDA3937_RS09500	0.53	-1.2
2,140,612	-		DDA3937_RS09500	0.53	+0.8
2,140,719	+		DDA3937_RS09500	0.69	-2.1
2,140,719	+		DDA3937_RS09500	0.69	-2.5
2,140,719	+		DDA3937_RS09500	0.69	-0.7
2,140,719	+		DDA3937_RS09500	0.69	-0.1
2,140,722	+		DDA3937_RS09500	0.70	+1.5
2,140,771	+		DDA3937_RS09500	0.77	-0.4
2,140,772	-		DDA3937_RS09500	0.77	+2.9
2,140,773	+		DDA3937_RS09500	0.77	+0.5
2,140,773	+		DDA3937_RS09500	0.77	-0.3
2,140,773	+		DDA3937_RS09500	0.77	-1.9
2,140,774	-		DDA3937_RS09500	0.78	+1.5
2,140,774	-		DDA3937_RS09500	0.78	-1.9
2,140,774	-		DDA3937_RS09500	0.78	-0.9
2,140,774	-		DDA3937_RS09500	0.78	+0.5
2,140,780	+		DDA3937_RS09500	0.78	+1.2
2,140,780	+		DDA3937_RS09500	0.78	-1.5
2,140,780	+		DDA3937_RS09500	0.78	+1.5
2,140,780	+		DDA3937_RS09500	0.78	-0.7
2,140,780	+		DDA3937_RS09500	0.78	-1.1
2,140,781	-		DDA3937_RS09500	0.79	-0.2
2,140,781	-		DDA3937_RS09500	0.79	+1.7
2,140,781	-		DDA3937_RS09500	0.79	-0.5
2,140,781	-		DDA3937_RS09500	0.79	-0.8
2,140,784	+		DDA3937_RS09500	0.79	-0.9
2,140,784	+		DDA3937_RS09500	0.79	-1.0
2,140,785	-		DDA3937_RS09500	0.79	+2.8
2,140,785	-		DDA3937_RS09500	0.79	+1.3
2,140,785	-		DDA3937_RS09500	0.79	+2.6
2,140,885	+				+0.6
2,140,885	+				+1.7
2,140,915	-				-0.9
2,140,958	-				-0.6
2,140,958	-				+0.7
2,141,006	+		DDA3937_RS09505	0.11	-0.9
2,141,006	+		DDA3937_RS09505	0.11	+0.1
2,141,006	+		DDA3937_RS09505	0.11	+1.6
2,141,006	+		DDA3937_RS09505	0.11	+0.1
2,141,006	+		DDA3937_RS09505	0.11	+1.4
2,141,006	+				+2.0
2,141,007	-		DDA3937_RS09505	0.12	-0.1
2,141,007	-		DDA3937_RS09505	0.12	+1.2
2,141,007	-		DDA3937_RS09505	0.12	+2.3
2,141,007	-		DDA3937_RS09505	0.12	+0.6
2,141,007	-		DDA3937_RS09505	0.12	-1.9
2,141,010	+		DDA3937_RS09505	0.12	-1.7
2,141,027	+		DDA3937_RS09505	0.14	-0.1
2,141,028	-		DDA3937_RS09505	0.15	+2.0
2,141,028	-		DDA3937_RS09505	0.15	+0.5
2,141,028	-		DDA3937_RS09505	0.15	-2.0
2,141,028	-		DDA3937_RS09505	0.15	+2.4
2,141,028	-		DDA3937_RS09505	0.15	+0.8
2,141,035	-				-1.1
2,141,209	-		DDA3937_RS09505	0.40	+2.7
2,141,297	+		DDA3937_RS09505	0.52	-1.9
2,141,297	+		DDA3937_RS09505	0.52	-0.2
2,141,298	-		DDA3937_RS09505	0.52	+1.0
2,141,298	-		DDA3937_RS09505	0.52	-0.1
2,141,349	+		DDA3937_RS09505	0.59	+0.1
2,141,350	-		DDA3937_RS09505	0.59	-2.0
2,141,441	+		DDA3937_RS09505	0.72	+1.3
2,141,441	+		DDA3937_RS09505	0.72	-1.5
2,141,445	+		DDA3937_RS09505	0.73	-2.0
2,141,445	+		DDA3937_RS09505	0.73	-0.5
2,141,446	-		DDA3937_RS09505	0.73	+1.9
2,141,446	-		DDA3937_RS09505	0.73	+2.0
2,141,483	-		DDA3937_RS09505	0.78	-0.5
2,141,483	-		DDA3937_RS09505	0.78	+1.3
2,141,483	-		DDA3937_RS09505	0.78	-0.4
2,141,641	+				+0.6
2,141,642	-				+2.7
2,141,642	-				+1.8
2,141,642	-				+0.1
2,141,649	-				+1.0
2,141,657	+				+1.5
2,141,657	+				-1.1
2,141,678	+				+1.2
2,141,691	-				+1.5
2,141,691	-				+0.7
2,141,790	-		DDA3937_RS09510	0.18	-2.1
2,141,797	-		DDA3937_RS09510	0.19	+0.5
2,141,815	+		DDA3937_RS09510	0.22	+0.7