Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09220

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,070,699	+				+3.0
2,070,700	-		DDA3937_RS22190	0.86	+2.0
2,070,700	-		DDA3937_RS22190	0.86	+3.6
2,070,700	-		DDA3937_RS22190	0.86	-2.4
2,070,749	+				-0.7
2,070,750	-				-0.1
2,070,759	+				+0.4
2,070,759	+				-2.9
2,070,760	-				-0.1
2,070,760	-				-2.0
2,070,760	-				+1.2
2,070,760	-				-2.7
2,070,762	+				-1.9
2,070,762	+				-0.1
2,070,762	+				+0.7
2,070,762	+				-2.5
2,070,762	+				-1.5
2,070,763	-				-1.1
2,070,815	-				-0.5
2,070,898	-		DDA3937_RS09215	0.17	-2.3
2,070,943	+		DDA3937_RS09215	0.23	+0.8
2,070,944	-		DDA3937_RS09215	0.23	-1.9
2,070,944	-		DDA3937_RS09215	0.23	-0.4
2,070,944	-		DDA3937_RS09215	0.23	+0.8
2,070,960	+		DDA3937_RS09215	0.25	-0.5
2,070,960	+		DDA3937_RS09215	0.25	+0.6
2,070,961	-		DDA3937_RS09215	0.25	-1.1
2,070,966	-		DDA3937_RS09215	0.26	+0.5
2,070,966	-		DDA3937_RS09215	0.26	-2.6
2,070,993	+		DDA3937_RS09215	0.30	-2.5
2,070,994	-		DDA3937_RS09215	0.30	-0.5
2,070,994	-		DDA3937_RS09215	0.30	+2.0
2,070,994	-		DDA3937_RS09215	0.30	-0.2
2,071,006	+		DDA3937_RS09215	0.31	-2.1
2,071,064	+		DDA3937_RS09215	0.39	-1.1
2,071,064	+		DDA3937_RS09215	0.39	+0.6
2,071,065	-		DDA3937_RS09215	0.39	-0.1
2,071,072	-		DDA3937_RS09215	0.40	-1.9
2,071,147	+		DDA3937_RS09215	0.50	+0.8
2,071,148	-		DDA3937_RS09215	0.50	-1.5
2,071,148	-		DDA3937_RS09215	0.50	-0.1
2,071,148	-		DDA3937_RS09215	0.50	+2.0
2,071,148	-		DDA3937_RS09215	0.50	-1.5
2,071,149	+		DDA3937_RS09215	0.50	-1.2
2,071,149	+		DDA3937_RS09215	0.50	-1.9
2,071,216	+		DDA3937_RS09215	0.59	+0.7
2,071,216	+		DDA3937_RS09215	0.59	-1.5
2,071,216	+		DDA3937_RS09215	0.59	-2.7
2,071,217	-		DDA3937_RS09215	0.59	-1.4
2,071,217	-		DDA3937_RS09215	0.59	-0.7
2,071,253	+		DDA3937_RS09215	0.63	-2.2
2,071,254	-		DDA3937_RS09215	0.64	+0.3
2,071,254	-		DDA3937_RS09215	0.64	+2.0
2,071,255	+		DDA3937_RS09215	0.64	-0.1
2,071,256	-		DDA3937_RS09215	0.64	-0.1
2,071,256	-		DDA3937_RS09215	0.64	-1.1
2,071,256	-		DDA3937_RS09215	0.64	-1.7
2,071,256	-		DDA3937_RS09215	0.64	-1.4
2,071,262	+		DDA3937_RS09215	0.65	-1.1
2,071,268	-		DDA3937_RS09215	0.65	-1.2
2,071,268	-		DDA3937_RS09215	0.65	+1.6
2,071,303	+		DDA3937_RS09215	0.70	-1.9
2,071,360	+		DDA3937_RS09215	0.77	-1.2
2,071,361	-		DDA3937_RS09215	0.77	+1.2
2,071,404	+		DDA3937_RS09215	0.83	-2.9
2,071,404	+		DDA3937_RS09215	0.83	-1.1
2,071,478	-				-1.4
2,071,498	+				-1.1
2,071,499	-				-1.1
2,071,500	+				+0.4
2,071,501	-				-0.1
2,071,501	-				+0.9
2,071,533	+				-0.9
2,071,533	+				+0.3
2,071,533	+				-3.5
2,071,592	+				-0.2
2,071,599	+				-0.1
2,071,599	+				-2.1
2,071,599	+				-1.1
2,071,599	+				+0.5
2,071,599	+				-0.9
2,071,599	+				-0.4
2,071,599	+				-0.9
2,071,600	-				-3.6
2,071,609	+				-0.5
2,071,609	+				+2.0
2,071,609	+				-1.5
2,071,609	+				-1.1
2,071,610	-				-2.5
2,071,610	-				+0.9
2,071,610	-				-2.0
2,071,613	+				+0.5
2,071,614	-				-1.9
2,071,623	-				-2.4
2,071,628	-				-1.0
2,071,628	-				+2.4
2,071,628	-				-0.0
2,071,648	-				+1.5
2,071,667	-				-2.5
2,071,708	+				-3.0
2,071,735	+				-1.5
2,071,787	+				+0.6
2,071,787	+				+0.6
2,071,787	+				+0.6
2,071,788	-				-0.1
2,071,788	-				+1.4
2,071,788	-				-0.9
2,071,788	-				-0.7
2,071,788	-				-0.6
2,071,791	+				-0.1
2,071,792	-				-1.6
2,071,792	-				-0.2
2,071,792	-				-0.9
2,071,825	+		DDA3937_RS09220	0.10	-0.9
2,071,826	-		DDA3937_RS09220	0.10	-2.3
2,071,826	-		DDA3937_RS09220	0.10	-1.0
2,071,826	-		DDA3937_RS09220	0.10	-1.7
2,071,826	-		DDA3937_RS09220	0.10	-0.7
2,071,836	-		DDA3937_RS09220	0.11	-1.9
2,071,836	-		DDA3937_RS09220	0.11	+0.1
2,071,893	-		DDA3937_RS09220	0.15	-0.2
2,071,895	+		DDA3937_RS09220	0.15	+1.5
2,071,895	+		DDA3937_RS09220	0.15	-0.5
2,071,895	+		DDA3937_RS09220	0.15	-0.5
2,071,896	-		DDA3937_RS09220	0.15	+0.7
2,071,899	-		DDA3937_RS09220	0.16	-1.9
2,071,904	+		DDA3937_RS09220	0.16	-2.7
2,071,904	+		DDA3937_RS09220	0.16	-0.9
2,071,955	+		DDA3937_RS09220	0.20	-1.1
2,071,955	+		DDA3937_RS09220	0.20	-1.1
2,071,955	+		DDA3937_RS09220	0.20	-0.5
2,071,955	+		DDA3937_RS09220	0.20	-1.8
2,071,955	+		DDA3937_RS09220	0.20	-1.2
2,071,956	-		DDA3937_RS09220	0.20	+0.1
2,071,956	-		DDA3937_RS09220	0.20	-0.8
2,071,956	-		DDA3937_RS09220	0.20	-0.1
2,071,956	-		DDA3937_RS09220	0.20	+0.5
2,071,956	-		DDA3937_RS09220	0.20	+0.9
2,071,956	-		DDA3937_RS09220	0.20	-1.9
2,071,956	-		DDA3937_RS09220	0.20	+0.1
2,071,956	-				-0.5
2,071,957	+				+1.5
2,071,958	-		DDA3937_RS09220	0.20	+2.8
2,071,958	-		DDA3937_RS09220	0.20	-1.1
2,071,960	-		DDA3937_RS09220	0.20	-1.5
2,072,049	-		DDA3937_RS09220	0.27	-1.1
2,072,054	-		DDA3937_RS09220	0.27	-0.9
2,072,085	+		DDA3937_RS09220	0.30	-2.3
2,072,085	+		DDA3937_RS09220	0.30	-1.9
2,072,085	+		DDA3937_RS09220	0.30	-2.8
2,072,085	+		DDA3937_RS09220	0.30	+0.9
2,072,085	+		DDA3937_RS09220	0.30	-0.3
2,072,085	+		DDA3937_RS09220	0.30	+0.9
2,072,085	+		DDA3937_RS09220	0.30	+2.0
2,072,085	+		DDA3937_RS09220	0.30	-1.8
2,072,085	+		DDA3937_RS09220	0.30	+1.3
2,072,085	+		DDA3937_RS09220	0.30	+0.6
2,072,086	-		DDA3937_RS09220	0.30	-1.3
2,072,086	-		DDA3937_RS09220	0.30	-1.5
2,072,086	-		DDA3937_RS09220	0.30	-0.8
2,072,111	+		DDA3937_RS09220	0.32	+0.1
2,072,111	+		DDA3937_RS09220	0.32	-2.4
2,072,111	+		DDA3937_RS09220	0.32	-2.2
2,072,112	-		DDA3937_RS09220	0.32	+0.0
2,072,113	+		DDA3937_RS09220	0.32	-2.0
2,072,113	+		DDA3937_RS09220	0.32	-2.1
2,072,113	+		DDA3937_RS09220	0.32	-1.5
2,072,114	-		DDA3937_RS09220	0.32	+2.2
2,072,114	-		DDA3937_RS09220	0.32	-0.4
2,072,114	-		DDA3937_RS09220	0.32	-0.9
2,072,114	-		DDA3937_RS09220	0.32	+0.7
2,072,114	-		DDA3937_RS09220	0.32	-0.4
2,072,114	-		DDA3937_RS09220	0.32	-0.3
2,072,114	-		DDA3937_RS09220	0.32	+0.2
2,072,154	-		DDA3937_RS09220	0.35	-2.4
2,072,154	-		DDA3937_RS09220	0.35	-1.3
2,072,246	+		DDA3937_RS09220	0.42	-2.2
2,072,287	+		DDA3937_RS09220	0.45	-0.8
2,072,288	-		DDA3937_RS09220	0.45	-1.3
2,072,291	+		DDA3937_RS09220	0.45	-1.1
2,072,291	+		DDA3937_RS09220	0.45	-0.9
2,072,291	+		DDA3937_RS09220	0.45	-2.4
2,072,291	+		DDA3937_RS09220	0.45	+0.5
2,072,292	-		DDA3937_RS09220	0.45	+0.5
2,072,292	-		DDA3937_RS09220	0.45	+0.7
2,072,292	-				-0.1
2,072,292	-		DDA3937_RS09220	0.45	+0.5
2,072,324	+		DDA3937_RS09220	0.47	+2.4
2,072,366	+		DDA3937_RS09220	0.51	-2.1
2,072,453	-		DDA3937_RS09220	0.57	+0.5
2,072,453	-		DDA3937_RS09220	0.57	-1.3
2,072,453	-		DDA3937_RS09220	0.57	-0.5
2,072,501	-		DDA3937_RS09220	0.61	-0.9
2,072,501	-		DDA3937_RS09220	0.61	-1.1
2,072,504	+		DDA3937_RS09220	0.61	-0.5
2,072,504	+		DDA3937_RS09220	0.61	+0.3
2,072,516	+		DDA3937_RS09220	0.62	+0.8
2,072,517	-		DDA3937_RS09220	0.62	+1.0
2,072,540	+		DDA3937_RS09220	0.64	-0.7
2,072,576	+		DDA3937_RS09220	0.66	+0.5
2,072,577	-		DDA3937_RS09220	0.66	+0.6
2,072,580	+		DDA3937_RS09220	0.67	-0.9
2,072,580	+		DDA3937_RS09220	0.67	-1.6
2,072,581	-		DDA3937_RS09220	0.67	-0.9
2,072,581	-		DDA3937_RS09220	0.67	-1.3
2,072,581	-		DDA3937_RS09220	0.67	-2.0
2,072,589	-		DDA3937_RS09220	0.67	-1.7
2,072,593	+		DDA3937_RS09220	0.68	-2.6
2,072,593	+		DDA3937_RS09220	0.68	+0.8
2,072,593	+		DDA3937_RS09220	0.68	-1.7
2,072,593	+		DDA3937_RS09220	0.68	-2.3
2,072,594	-		DDA3937_RS09220	0.68	+2.0
2,072,646	-		DDA3937_RS09220	0.72	-0.1
2,072,674	+		DDA3937_RS09220	0.74	-2.5
2,072,705	+		DDA3937_RS09220	0.76	-1.3
2,072,711	+		DDA3937_RS09220	0.76	-1.2
2,072,712	-		DDA3937_RS09220	0.76	-0.9
2,072,745	-		DDA3937_RS09220	0.79	-0.7
2,072,768	+		DDA3937_RS09220	0.81	+1.0
2,072,786	+		DDA3937_RS09220	0.82	-2.2
2,072,786	+		DDA3937_RS09220	0.82	-0.3
2,072,787	-		DDA3937_RS09220	0.82	-0.9
2,072,858	-		DDA3937_RS09220	0.87	-1.9
2,072,858	-				+1.5
2,072,858	-		DDA3937_RS09220	0.87	-1.1
2,072,859	+		DDA3937_RS09220	0.87	-2.8
2,072,859	+		DDA3937_RS09220	0.87	+0.5
2,072,859	+		DDA3937_RS09220	0.87	-1.0
2,072,860	-		DDA3937_RS09220	0.88	-0.5
2,072,905	+				-1.5
2,072,986	+				-2.5
2,072,987	-				-0.9
2,072,987	-				+0.0
2,072,998	+				-2.1
2,072,998	+				-2.0
2,072,998	+				+0.7
2,072,999	-				-1.2
2,072,999	-				-0.1
2,072,999	-				+0.5
2,073,023	-				+0.5
2,073,024	+				-1.7
2,073,034	+				-1.6
2,073,034	+				-2.2
2,073,034	+				+0.0
2,073,034	+				-2.4
2,073,034	+				+1.5
2,073,035	-				-2.2
2,073,035	-				-0.9
2,073,035	-				-1.9
2,073,036	+				-0.9
2,073,036	+				-2.4
2,073,036	+				+0.9
2,073,036	+				-2.3
2,073,061	+				-4.0
2,073,075	-				-0.6
2,073,075	-				-0.5
2,073,113	+				-0.9
2,073,249	-				-2.3
2,073,292	-		DDA3937_RS09225	0.10	+2.1
2,073,301	+		DDA3937_RS09225	0.11	-1.3
2,073,368	+		DDA3937_RS09225	0.17	-0.1
2,073,369	-		DDA3937_RS09225	0.17	+1.8
2,073,369	-		DDA3937_RS09225	0.17	+0.1
2,073,465	+		DDA3937_RS09225	0.25	+3.0
2,073,630	-		DDA3937_RS09225	0.39	-1.5
2,073,630	-		DDA3937_RS09225	0.39	-1.5
2,073,639	+		DDA3937_RS09225	0.40	-1.5
2,073,640	-		DDA3937_RS09225	0.40	+2.5
2,073,650	+		DDA3937_RS09225	0.40	-2.6
2,073,651	-		DDA3937_RS09225	0.41	-0.7
2,073,651	-		DDA3937_RS09225	0.41	+1.3
2,073,651	-		DDA3937_RS09225	0.41	-0.9
2,073,698	-		DDA3937_RS09225	0.45	-1.8
2,073,803	-		DDA3937_RS09225	0.53	-1.6
2,073,809	-		DDA3937_RS09225	0.54	-1.0
2,073,827	+		DDA3937_RS09225	0.55	-0.5
2,073,828	-		DDA3937_RS09225	0.55	-0.6
2,073,828	-		DDA3937_RS09225	0.55	-0.5
2,074,024	-		DDA3937_RS09225	0.72	-1.3
2,074,024	-		DDA3937_RS09225	0.72	+1.5