Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09205

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,067,649	+				-2.1
2,067,649	+				+2.3
2,067,649	+				-0.5
2,067,649	+				-0.5
2,067,650	-				-0.5
2,067,650	-				+0.5
2,067,650	-				+2.2
2,067,733	-				-1.3
2,068,029	-		DDA3937_RS09200	0.25	+1.4
2,068,074	+		DDA3937_RS09200	0.31	+2.2
2,068,075	-		DDA3937_RS09200	0.31	-0.7
2,068,084	+		DDA3937_RS09200	0.33	-0.3
2,068,084	+		DDA3937_RS09200	0.33	-0.8
2,068,084	+		DDA3937_RS09200	0.33	-0.9
2,068,085	-		DDA3937_RS09200	0.33	-0.5
2,068,132	+		DDA3937_RS09200	0.39	-0.3
2,068,132	+		DDA3937_RS09200	0.39	+0.6
2,068,247	+		DDA3937_RS09200	0.55	-0.1
2,068,248	-		DDA3937_RS09200	0.56	-1.5
2,068,324	-		DDA3937_RS09200	0.66	+0.3
2,068,326	+		DDA3937_RS09200	0.67	-0.1
2,068,326	+		DDA3937_RS09200	0.67	-1.1
2,068,326	+		DDA3937_RS09200	0.67	-1.3
2,068,327	-		DDA3937_RS09200	0.67	+1.5
2,068,336	-		DDA3937_RS09200	0.68	-2.6
2,068,421	-		DDA3937_RS09200	0.80	-0.3
2,068,440	+		DDA3937_RS09200	0.82	-1.3
2,068,441	-		DDA3937_RS09200	0.83	+0.9
2,068,441	-		DDA3937_RS09200	0.83	-0.5
2,068,460	+		DDA3937_RS09200	0.85	-2.5
2,068,460	+		DDA3937_RS09200	0.85	-1.1
2,068,460	+		DDA3937_RS09200	0.85	+0.9
2,068,460	+		DDA3937_RS09200	0.85	-1.3
2,068,461	-		DDA3937_RS09200	0.85	-0.3
2,068,461	-		DDA3937_RS09200	0.85	-0.3
2,068,494	+				+2.5
2,068,495	-				-3.1
2,068,540	+				-0.9
2,068,540	+				-2.2
2,068,540	+				-0.5
2,068,544	+				-0.2
2,068,550	-				-1.9
2,068,550	-				-3.3
2,068,550	-				+1.7
2,068,564	+				-1.5
2,068,564	+				-1.4
2,068,565	-				+3.0
2,068,565	-				-0.9
2,068,598	+				-1.3
2,068,599	-				-0.3
2,068,599	-				-0.9
2,068,605	+				-0.9
2,068,606	-				+1.2
2,068,606	-				-1.1
2,068,606	-				+1.0
2,068,614	+				-1.3
2,068,615	-				-0.6
2,068,616	+				-0.9
2,068,617	-				-1.1
2,068,771	+		DDA3937_RS09205	0.16	-1.1
2,068,771	+		DDA3937_RS09205	0.16	-0.9
2,068,771	+		DDA3937_RS09205	0.16	-0.4
2,068,772	-		DDA3937_RS09205	0.16	-0.5
2,068,875	+				-0.1
2,068,875	+		DDA3937_RS09205	0.27	-0.1
2,068,875	+		DDA3937_RS09205	0.27	+0.9
2,068,875	+		DDA3937_RS09205	0.27	-2.5
2,068,876	-		DDA3937_RS09205	0.27	-2.2
2,068,876	-		DDA3937_RS09205	0.27	+2.3
2,068,876	-				-0.1
2,068,876	-		DDA3937_RS09205	0.27	-1.1
2,068,878	+		DDA3937_RS09205	0.27	-1.4
2,068,878	+				+0.1
2,068,878	+		DDA3937_RS09205	0.27	-1.1
2,068,879	-		DDA3937_RS09205	0.27	-0.1
2,069,125	+		DDA3937_RS09205	0.53	-1.9
2,069,126	-		DDA3937_RS09205	0.53	-0.3
2,069,126	-		DDA3937_RS09205	0.53	-1.2
2,069,126	-		DDA3937_RS09205	0.53	-0.1
2,069,194	-		DDA3937_RS09205	0.60	+0.6
2,069,357	-		DDA3937_RS09205	0.76	-1.1
2,069,357	-		DDA3937_RS09205	0.76	-0.0
2,069,357	-		DDA3937_RS09205	0.76	-1.7
2,069,357	-		DDA3937_RS09205	0.76	-3.1
2,069,576	+				-1.7
2,069,605	+				-1.8
2,069,605	+				+1.0
2,069,605	+				-1.0
2,069,605	+				-1.6
2,069,606	-				-0.9
2,069,618	-				-0.2
2,069,618	-				-1.4
2,069,618	-				-2.2
2,069,669	+				-3.2
2,069,687	+				+0.0
2,069,703	+				+1.0
2,069,709	+				-0.1
2,069,891	-		DDA3937_RS09210	0.39	+1.2
2,069,961	+		DDA3937_RS09210	0.51	+1.1
2,069,962	-		DDA3937_RS09210	0.51	+0.5
2,069,962	-		DDA3937_RS09210	0.51	+0.8
2,069,962	-		DDA3937_RS09210	0.51	-1.9
2,069,962	-		DDA3937_RS09210	0.51	-1.7
2,069,963	+				-0.5
2,069,964	-		DDA3937_RS09210	0.52	-0.4
2,069,972	+		DDA3937_RS09210	0.53	-1.0
2,069,973	-		DDA3937_RS09210	0.53	+1.0
2,069,973	-		DDA3937_RS09210	0.53	+0.6
2,069,988	+		DDA3937_RS09210	0.56	+0.9
2,069,988	+		DDA3937_RS09210	0.56	-0.5
2,069,989	-		DDA3937_RS09210	0.56	-1.4
2,069,996	+		DDA3937_RS09210	0.57	+1.1
2,069,996	+		DDA3937_RS09210	0.57	-3.2
2,069,996	+		DDA3937_RS09210	0.57	+0.2
2,069,996	+		DDA3937_RS09210	0.57	+0.5
2,069,996	+		DDA3937_RS09210	0.57	+0.6
2,069,996	+		DDA3937_RS09210	0.57	-0.9
2,069,997	-		DDA3937_RS09210	0.57	-1.4
2,069,997	-		DDA3937_RS09210	0.57	-0.5
2,069,997	-		DDA3937_RS09210	0.57	+1.2
2,069,997	-		DDA3937_RS09210	0.57	-2.0
2,070,012	+		DDA3937_RS09210	0.60	-1.7
2,070,015	-		DDA3937_RS09210	0.61	+0.9
2,070,015	-		DDA3937_RS09210	0.61	-2.2
2,070,015	-		DDA3937_RS09210	0.61	-1.5
2,070,060	+		DDA3937_RS09210	0.68	+1.1
2,070,061	-		DDA3937_RS09210	0.69	+0.3
2,070,086	-		DDA3937_RS09210	0.73	-0.7
2,070,169	-		DDA3937_RS09210	0.87	-1.1
2,070,190	-				+0.8
2,070,190	-				+1.7
2,070,190	-				+0.5
2,070,190	-				-2.8
2,070,197	+				-2.2
2,070,197	+				-1.7
2,070,198	-				-0.0
2,070,198	-				-2.1
2,070,198	-				+0.9
2,070,198	-				+0.1
2,070,198	-				+1.0
2,070,198	-				-1.5
2,070,247	+				-0.4
2,070,247	+				+0.9
2,070,247	+				+0.7
2,070,247	+				-2.3
2,070,247	+				-0.6
2,070,247	+				-0.3
2,070,248	-				-2.3
2,070,248	-				-1.3
2,070,248	-				-0.1
2,070,248	-				+0.9
2,070,252	+				-0.1
2,070,252	+				+1.6
2,070,253	-				-0.9
2,070,253	-				+2.6
2,070,253	-				-0.1
2,070,253	-				+1.9
2,070,253	-				-0.5
2,070,253	-				-2.9
2,070,256	+				+0.0
2,070,257	-				-2.1
2,070,370	+		DDA3937_RS23470	0.36	+1.4
2,070,371	-		DDA3937_RS23470	0.36	-0.3
2,070,373	+		DDA3937_RS23470	0.37	-2.0
2,070,373	+		DDA3937_RS23470	0.37	-1.1
2,070,373	+		DDA3937_RS23470	0.37	-0.3
2,070,401	+		DDA3937_RS23470	0.45	+0.5
2,070,401	+		DDA3937_RS23470	0.45	+1.1
2,070,402	-		DDA3937_RS23470	0.46	-1.1
2,070,402	-		DDA3937_RS23470	0.46	+0.7
2,070,402	-		DDA3937_RS23470	0.46	-2.7
2,070,405	+		DDA3937_RS23470	0.47	-1.1
2,070,405	+		DDA3937_RS23470	0.47	+1.6
2,070,406	-		DDA3937_RS23470	0.47	-1.3
2,070,406	-		DDA3937_RS23470	0.47	+0.2
2,070,406	-		DDA3937_RS23470	0.47	-0.1
2,070,431	+		DDA3937_RS23470	0.55	-0.7
2,070,473	+		DDA3937_RS23470	0.67	-2.6
2,070,524	+				-1.2
2,070,525	-				-0.9
2,070,525	-				+1.9
2,070,586	+		DDA3937_RS22190	0.42	-1.9
2,070,587	-		DDA3937_RS22190	0.42	+2.1