Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08995

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,026,636	-		DDA3937_RS22780	0.78	-2.1
2,026,638	+		DDA3937_RS22780	0.79	-0.4
2,026,638	+		DDA3937_RS22780	0.79	-0.1
2,026,638	+		DDA3937_RS22780	0.79	-2.0
2,026,638	+		DDA3937_RS22780	0.79	-0.9
2,026,639	-		DDA3937_RS22780	0.79	-3.1
2,026,639	-		DDA3937_RS22780	0.79	+1.5
2,026,747	-				-0.4
2,026,756	+				-1.9
2,026,757	-				-1.7
2,026,757	-				+1.5
2,026,757	-				-1.3
2,026,780	+				-2.1
2,026,781	-				+0.7
2,026,781	-				-1.1
2,026,781	-				-1.5
2,026,781	-				-0.1
2,026,781	-				-1.1
2,026,781	-				-0.5
2,026,813	-		DDA3937_RS08990	0.12	-0.1
2,026,823	+		DDA3937_RS08990	0.14	-1.9
2,026,830	+		DDA3937_RS08990	0.16	+0.7
2,026,831	-		DDA3937_RS08990	0.16	+1.1
2,026,831	-		DDA3937_RS08990	0.16	-0.5
2,026,831	-		DDA3937_RS08990	0.16	-2.0
2,026,833	+		DDA3937_RS08990	0.16	-0.6
2,026,833	+		DDA3937_RS08990	0.16	-0.7
2,026,833	+		DDA3937_RS08990	0.16	-1.3
2,026,834	-		DDA3937_RS08990	0.17	+1.0
2,026,834	-		DDA3937_RS08990	0.17	+1.4
2,026,862	-		DDA3937_RS08990	0.23	-0.9
2,026,893	+		DDA3937_RS08990	0.30	+0.4
2,026,894	-		DDA3937_RS08990	0.31	+0.8
2,026,929	+		DDA3937_RS08990	0.39	+0.3
2,026,937	+		DDA3937_RS08990	0.41	-0.4
2,026,938	-		DDA3937_RS08990	0.41	-1.3
2,026,957	+		DDA3937_RS08990	0.45	-1.5
2,026,957	+		DDA3937_RS08990	0.45	+2.2
2,026,957	+		DDA3937_RS08990	0.45	-1.6
2,026,968	-		DDA3937_RS08990	0.48	+1.3
2,026,984	-		DDA3937_RS08990	0.51	-0.7
2,027,013	+		DDA3937_RS08990	0.58	+0.5
2,027,163	+				-1.6
2,027,168	+				-1.0
2,027,168	+				-2.7
2,027,198	-				-0.8
2,027,338	+				-2.0
2,027,342	+				-0.1
2,027,342	+				-1.1
2,027,357	-				-1.2
2,027,388	-				-0.1
2,027,388	-				-2.0
2,027,389	+				-1.3
2,027,389	+				-1.4
2,027,389	+				-2.5
2,027,390	-				-0.9
2,027,390	-				-0.9
2,027,390	-				-2.0
2,027,419	-				-1.0
2,027,421	+				-1.9
2,027,422	-				-0.9
2,027,536	-				-1.1
2,027,584	+				-1.3
2,027,585	-				-1.5
2,027,587	+				-0.5
2,027,647	+				-3.4
2,027,658	+				-2.5
2,027,659	-				+0.1
2,027,670	+		DDA3937_RS08995	0.12	-1.3
2,027,671	-		DDA3937_RS08995	0.12	-0.9
2,027,671	-		DDA3937_RS08995	0.12	+0.3
2,027,801	+		DDA3937_RS08995	0.31	-1.9
2,027,824	+		DDA3937_RS08995	0.34	-0.3
2,027,825	-		DDA3937_RS08995	0.35	-0.5
2,027,852	+		DDA3937_RS08995	0.39	-1.0
2,027,853	-		DDA3937_RS08995	0.39	+1.5
2,027,853	-		DDA3937_RS08995	0.39	-0.2
2,027,853	-		DDA3937_RS08995	0.39	-0.7
2,027,948	+		DDA3937_RS08995	0.53	+3.1
2,027,948	+		DDA3937_RS08995	0.53	+1.1
2,027,982	+		DDA3937_RS08995	0.58	-1.1
2,027,983	-		DDA3937_RS08995	0.58	-1.5
2,027,983	-		DDA3937_RS08995	0.58	-0.7
2,027,985	+		DDA3937_RS08995	0.58	-1.2
2,028,001	+		DDA3937_RS08995	0.61	+0.1
2,028,001	+		DDA3937_RS08995	0.61	-1.5
2,028,001	+		DDA3937_RS08995	0.61	-0.9
2,028,001	+				-1.1
2,028,002	-		DDA3937_RS08995	0.61	-1.7
2,028,002	-		DDA3937_RS08995	0.61	-1.3
2,028,002	-		DDA3937_RS08995	0.61	+0.6
2,028,002	-		DDA3937_RS08995	0.61	+0.3
2,028,029	+		DDA3937_RS08995	0.65	-1.9
2,028,034	+		DDA3937_RS08995	0.65	-2.8
2,028,095	+		DDA3937_RS08995	0.75	-2.0
2,028,095	+		DDA3937_RS08995	0.75	+0.8
2,028,096	-		DDA3937_RS08995	0.75	-2.4
2,028,096	-		DDA3937_RS08995	0.75	-0.1
2,028,096	-		DDA3937_RS08995	0.75	+0.5
2,028,096	-		DDA3937_RS08995	0.75	-1.3
2,028,096	-		DDA3937_RS08995	0.75	-1.3
2,028,154	-		DDA3937_RS08995	0.83	-0.3
2,028,159	+		DDA3937_RS08995	0.84	-2.1
2,028,159	+		DDA3937_RS08995	0.84	-1.1
2,028,160	-		DDA3937_RS08995	0.84	-2.5
2,028,160	-		DDA3937_RS08995	0.84	+0.5
2,028,165	+		DDA3937_RS08995	0.85	-1.3
2,028,228	+				-3.2
2,028,228	+				+0.1
2,028,228	+				-1.7
2,028,228	+				+0.8
2,028,228	+				-0.0
2,028,228	+				+1.7
2,028,228	+				-1.1
2,028,229	-				-1.1
2,028,229	-				-2.8
2,028,229	-				+0.3
2,028,229	-				-0.9
2,028,229	-				-0.2
2,028,229	-				+1.0
2,028,242	+				+0.7
2,028,242	+				+2.9
2,028,242	+				-1.1
2,028,242	+				-0.3
2,028,243	-				-0.9
2,028,243	-				+1.1
2,028,249	+				-0.9
2,028,249	+				-0.4
2,028,250	-				-0.5
2,028,250	-				-1.5
2,028,260	+				-0.7
2,028,260	+				+0.3
2,028,261	-				-2.2
2,028,261	-				-1.1
2,028,280	+				-0.5
2,028,281	-				-0.4
2,028,289	-				-1.0
2,028,301	+				+0.2
2,028,328	-				+1.5
2,028,328	-				+0.1
2,028,328	-				-0.3
2,028,335	-				-1.1
2,028,335	-				+2.2
2,028,348	-				-0.1
2,028,348	-				+0.3
2,028,416	+				-2.4
2,028,416	+				-3.1
2,028,416	+				-2.1
2,028,417	-				+2.8
2,028,417	-				-0.9
2,028,417	-				+1.1
2,028,447	+		DDA3937_RS09000	0.14	-0.5
2,028,448	-		DDA3937_RS09000	0.14	-2.1
2,028,448	-		DDA3937_RS09000	0.14	+0.5
2,028,480	+				-0.9
2,028,503	+		DDA3937_RS09000	0.21	-2.2
2,028,504	-		DDA3937_RS09000	0.21	+0.8
2,028,589	+		DDA3937_RS09000	0.33	-1.3
2,028,590	-		DDA3937_RS09000	0.33	+0.7
2,028,644	+		DDA3937_RS09000	0.40	-0.9
2,028,645	-		DDA3937_RS09000	0.40	+0.5
2,028,679	+		DDA3937_RS09000	0.45	-0.9
2,028,679	+		DDA3937_RS09000	0.45	-1.5
2,028,679	+		DDA3937_RS09000	0.45	-0.5
2,028,679	+		DDA3937_RS09000	0.45	-2.1
2,028,679	+		DDA3937_RS09000	0.45	+0.1
2,028,680	-				-0.5
2,028,680	-		DDA3937_RS09000	0.45	-1.1
2,028,680	-		DDA3937_RS09000	0.45	-0.4
2,028,680	-		DDA3937_RS09000	0.45	-0.7
2,028,680	-		DDA3937_RS09000	0.45	+0.5
2,028,680	-		DDA3937_RS09000	0.45	+1.2
2,028,681	+		DDA3937_RS09000	0.45	-1.5
2,028,681	+		DDA3937_RS09000	0.45	-0.9
2,028,681	+		DDA3937_RS09000	0.45	-2.1
2,028,682	-		DDA3937_RS09000	0.45	-1.9
2,028,682	-		DDA3937_RS09000	0.45	-1.7
2,028,682	-		DDA3937_RS09000	0.45	-1.9
2,028,682	-		DDA3937_RS09000	0.45	-1.1
2,028,682	-		DDA3937_RS09000	0.45	+0.1
2,028,682	-		DDA3937_RS09000	0.45	-1.1
2,028,687	+		DDA3937_RS09000	0.46	+0.9
2,028,687	+		DDA3937_RS09000	0.46	+0.5
2,028,687	+		DDA3937_RS09000	0.46	-2.1
2,028,687	+		DDA3937_RS09000	0.46	-2.6
2,028,687	+		DDA3937_RS09000	0.46	+3.1
2,028,688	-		DDA3937_RS09000	0.46	+0.2
2,028,688	-		DDA3937_RS09000	0.46	+1.6
2,028,688	-		DDA3937_RS09000	0.46	+1.6
2,028,688	-		DDA3937_RS09000	0.46	-0.2
2,028,690	+		DDA3937_RS09000	0.46	-2.2
2,028,691	-		DDA3937_RS09000	0.46	-1.3
2,028,739	+		DDA3937_RS09000	0.53	+1.2
2,028,739	+		DDA3937_RS09000	0.53	+3.9
2,028,740	-		DDA3937_RS09000	0.53	+1.5
2,028,746	+		DDA3937_RS09000	0.54	-0.1
2,028,746	+		DDA3937_RS09000	0.54	-1.7
2,028,747	-		DDA3937_RS09000	0.54	+0.6
2,028,747	-		DDA3937_RS09000	0.54	-0.0
2,028,747	-		DDA3937_RS09000	0.54	+0.5
2,028,747	-		DDA3937_RS09000	0.54	-2.2
2,028,766	-		DDA3937_RS09000	0.56	-0.5
2,028,770	+				-0.5
2,028,770	+		DDA3937_RS09000	0.57	+0.9
2,028,770	+		DDA3937_RS09000	0.57	-0.3
2,028,770	+		DDA3937_RS09000	0.57	+0.8
2,028,770	+		DDA3937_RS09000	0.57	-1.8
2,028,771	-		DDA3937_RS09000	0.57	+0.3
2,028,771	-		DDA3937_RS09000	0.57	-0.2
2,028,771	-		DDA3937_RS09000	0.57	-0.7
2,028,771	-		DDA3937_RS09000	0.57	-2.3
2,028,774	+		DDA3937_RS09000	0.57	-1.3
2,028,775	-		DDA3937_RS09000	0.57	-0.7
2,028,799	+		DDA3937_RS09000	0.61	-3.1
2,028,813	+		DDA3937_RS09000	0.63	-0.5
2,028,813	+		DDA3937_RS09000	0.63	+0.5
2,028,815	+		DDA3937_RS09000	0.63	-2.0
2,028,815	+		DDA3937_RS09000	0.63	-2.2
2,028,815	+		DDA3937_RS09000	0.63	-0.9
2,028,815	+		DDA3937_RS09000	0.63	-0.7
2,028,815	+		DDA3937_RS09000	0.63	-3.7
2,028,815	+		DDA3937_RS09000	0.63	-0.9
2,028,815	+		DDA3937_RS09000	0.63	+1.5
2,028,815	+		DDA3937_RS09000	0.63	-3.0
2,028,815	+		DDA3937_RS09000	0.63	-1.1
2,028,815	+		DDA3937_RS09000	0.63	-1.3
2,028,815	+		DDA3937_RS09000	0.63	-1.3
2,028,815	+		DDA3937_RS09000	0.63	-2.5
2,028,815	+		DDA3937_RS09000	0.63	-2.1
2,028,815	+		DDA3937_RS09000	0.63	-0.9
2,028,815	+		DDA3937_RS09000	0.63	-1.3
2,028,816	-		DDA3937_RS09000	0.63	-1.5
2,028,816	-				+0.9
2,028,816	-		DDA3937_RS09000	0.63	-2.5
2,028,816	-		DDA3937_RS09000	0.63	+1.0
2,028,816	-		DDA3937_RS09000	0.63	-0.3
2,028,816	-		DDA3937_RS09000	0.63	-2.2
2,028,816	-		DDA3937_RS09000	0.63	+0.7
2,028,816	-		DDA3937_RS09000	0.63	+2.6
2,028,816	-		DDA3937_RS09000	0.63	+0.1
2,028,816	-		DDA3937_RS09000	0.63	-2.3
2,028,816	-		DDA3937_RS09000	0.63	-2.4
2,028,823	+		DDA3937_RS09000	0.64	-1.3
2,028,823	+				-0.1
2,028,823	+		DDA3937_RS09000	0.64	-0.5
2,028,824	-		DDA3937_RS09000	0.64	+0.4
2,028,824	-		DDA3937_RS09000	0.64	+0.2
2,028,824	-		DDA3937_RS09000	0.64	-0.1
2,028,824	-		DDA3937_RS09000	0.64	+1.5
2,028,824	-		DDA3937_RS09000	0.64	+0.2
2,028,825	+		DDA3937_RS09000	0.64	+0.5
2,028,825	+		DDA3937_RS09000	0.64	-2.2
2,028,950	-		DDA3937_RS09000	0.81	-0.6
2,028,967	-		DDA3937_RS09000	0.83	-0.1
2,028,994	+		DDA3937_RS09000	0.87	-2.1
2,028,995	-		DDA3937_RS09000	0.87	+0.5
2,029,042	-				-1.1
2,029,075	-				-0.9
2,029,081	+				-0.9
2,029,081	+				-0.5
2,029,081	+				+0.5
2,029,081	+				+0.5
2,029,082	-				-1.9
2,029,082	-				-1.4
2,029,082	-				-1.0
2,029,082	-				-1.5
2,029,082	-				+0.2
2,029,082	-				-0.1
2,029,087	-				-0.3
2,029,087	-				+1.2
2,029,115	-				+1.5
2,029,151	+				-1.7
2,029,152	-				-2.0
2,029,152	-				+0.7
2,029,153	+				+0.5
2,029,240	+				+0.9
2,029,241	-				+2.0
2,029,241	-				-0.8
2,029,241	-				+1.2