Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08945

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,019,086	+				+1.4
2,019,092	+				+0.2
2,019,092	+				+1.5
2,019,102	+				-0.5
2,019,108	+				-0.5
2,019,108	+				-2.0
2,019,108	+				-1.7
2,019,108	+				+1.0
2,019,108	+				-3.0
2,019,108	+				-1.0
2,019,108	+				+2.1
2,019,108	+				+1.5
2,019,108	+				-1.1
2,019,108	+				-2.7
2,019,108	+				-1.2
2,019,108	+				+3.1
2,019,108	+				+0.1
2,019,109	-				-0.8
2,019,109	-				+0.9
2,019,109	-				+0.5
2,019,109	-				-1.4
2,019,109	-				-1.3
2,019,109	-				-1.3
2,019,109	-				-0.9
2,019,109	-				+2.1
2,019,167	-				-2.3
2,019,224	+		DDA3937_RS08940	0.12	-2.6
2,019,224	+		DDA3937_RS08940	0.12	-0.0
2,019,224	+		DDA3937_RS08940	0.12	+1.8
2,019,225	-		DDA3937_RS08940	0.12	-1.7
2,019,225	-		DDA3937_RS08940	0.12	+1.5
2,019,225	-		DDA3937_RS08940	0.12	-1.0
2,019,282	+		DDA3937_RS08940	0.18	+1.8
2,019,305	+		DDA3937_RS08940	0.20	-1.1
2,019,306	-		DDA3937_RS08940	0.20	+2.5
2,019,347	+		DDA3937_RS08940	0.25	-2.1
2,019,521	+		DDA3937_RS08940	0.43	+1.2
2,019,521	+		DDA3937_RS08940	0.43	+0.3
2,019,521	+		DDA3937_RS08940	0.43	-0.3
2,019,521	+		DDA3937_RS08940	0.43	-0.5
2,019,522	-		DDA3937_RS08940	0.43	+2.1
2,019,522	-		DDA3937_RS08940	0.43	+0.5
2,019,589	+		DDA3937_RS08940	0.50	-1.9
2,019,589	+		DDA3937_RS08940	0.50	-2.0
2,019,589	+		DDA3937_RS08940	0.50	-2.4
2,019,589	+		DDA3937_RS08940	0.50	+2.2
2,019,589	+		DDA3937_RS08940	0.50	-0.5
2,019,590	-		DDA3937_RS08940	0.50	+1.1
2,019,590	-		DDA3937_RS08940	0.50	+0.2
2,019,590	-		DDA3937_RS08940	0.50	-2.6
2,019,642	+		DDA3937_RS08940	0.55	+2.0
2,019,642	+		DDA3937_RS08940	0.55	-1.9
2,019,689	+		DDA3937_RS08940	0.60	+0.4
2,019,689	+		DDA3937_RS08940	0.60	-1.0
2,019,690	-		DDA3937_RS08940	0.60	-2.5
2,019,704	+		DDA3937_RS08940	0.62	-1.1
2,019,704	+		DDA3937_RS08940	0.62	+2.5
2,019,704	+		DDA3937_RS08940	0.62	-0.5
2,019,704	+		DDA3937_RS08940	0.62	-1.4
2,019,704	+		DDA3937_RS08940	0.62	+0.6
2,019,705	-		DDA3937_RS08940	0.62	-1.3
2,019,713	+		DDA3937_RS08940	0.63	-0.5
2,019,713	+		DDA3937_RS08940	0.63	+0.1
2,019,713	+		DDA3937_RS08940	0.63	-3.1
2,019,714	-				+1.5
2,019,714	-		DDA3937_RS08940	0.63	+2.1
2,019,714	-		DDA3937_RS08940	0.63	-2.0
2,019,714	-		DDA3937_RS08940	0.63	-2.2
2,019,752	+		DDA3937_RS08940	0.67	-0.4
2,019,753	-		DDA3937_RS08940	0.67	-2.2
2,019,774	-		DDA3937_RS08940	0.69	+1.0
2,019,793	+		DDA3937_RS08940	0.71	+2.8
2,019,793	+		DDA3937_RS08940	0.71	-1.5
2,019,793	+		DDA3937_RS08940	0.71	-0.9
2,019,873	+		DDA3937_RS08940	0.80	-0.9
2,019,881	+		DDA3937_RS08940	0.81	+1.1
2,019,881	+		DDA3937_RS08940	0.81	+1.7
2,019,882	-		DDA3937_RS08940	0.81	+0.5
2,019,882	-		DDA3937_RS08940	0.81	-0.5
2,019,882	-		DDA3937_RS08940	0.81	+0.1
2,019,882	-		DDA3937_RS08940	0.81	-0.7
2,019,882	-		DDA3937_RS08940	0.81	+0.2
2,019,882	-				+0.5
2,019,882	-		DDA3937_RS08940	0.81	+0.6
2,019,954	-		DDA3937_RS08940	0.88	-1.3
2,020,023	+				+1.6
2,020,023	+				+0.4
2,020,023	+				-2.1
2,020,023	+				-1.7
2,020,023	+				-0.5
2,020,023	+				-1.3
2,020,024	-				-0.9
2,020,024	-				+0.9
2,020,024	-				-2.7
2,020,024	-				-1.5
2,020,024	-				-1.3
2,020,024	-				-1.5
2,020,028	+				+1.5
2,020,064	+				-0.0
2,020,064	+				+0.4
2,020,064	+				+1.1
2,020,064	+				+1.1
2,020,064	+				+0.5
2,020,064	+				+0.6
2,020,065	-				-1.3
2,020,065	-				-3.5
2,020,065	-				+0.5
2,020,065	-				-1.6
2,020,265	-		DDA3937_RS08945	0.23	+1.6
2,020,282	-		DDA3937_RS08945	0.25	+2.0
2,020,381	+		DDA3937_RS08945	0.37	-0.4
2,020,382	-		DDA3937_RS08945	0.37	-0.5
2,020,425	+		DDA3937_RS08945	0.42	+0.6
2,020,426	-		DDA3937_RS08945	0.42	-0.9
2,020,475	-		DDA3937_RS08945	0.48	-2.3
2,020,475	-		DDA3937_RS08945	0.48	-0.9
2,020,479	+		DDA3937_RS08945	0.48	-2.9
2,020,500	+		DDA3937_RS08945	0.51	+0.8
2,020,501	-		DDA3937_RS08945	0.51	-0.4
2,020,501	-		DDA3937_RS08945	0.51	-1.1
2,020,582	+		DDA3937_RS08945	0.60	-1.5
2,020,582	+		DDA3937_RS08945	0.60	+0.6
2,020,582	+				-0.9
2,020,583	-		DDA3937_RS08945	0.60	-0.3
2,020,583	-		DDA3937_RS08945	0.60	+1.0
2,020,583	-		DDA3937_RS08945	0.60	+0.8
2,020,583	-		DDA3937_RS08945	0.60	-1.3
2,020,592	-				-0.5
2,020,592	-		DDA3937_RS08945	0.61	-0.8
2,020,665	+				+3.3
2,020,666	-		DDA3937_RS08945	0.70	+1.8
2,020,768	-		DDA3937_RS08945	0.82	-0.6
2,020,789	+		DDA3937_RS08945	0.85	-2.1
2,020,789	+		DDA3937_RS08945	0.85	+1.6
2,020,789	+		DDA3937_RS08945	0.85	+0.5
2,020,789	+		DDA3937_RS08945	0.85	+0.4
2,020,789	+		DDA3937_RS08945	0.85	-0.1
2,020,789	+		DDA3937_RS08945	0.85	-1.7
2,020,790	-		DDA3937_RS08945	0.85	-2.1
2,020,790	-		DDA3937_RS08945	0.85	-0.8
2,020,790	-		DDA3937_RS08945	0.85	+3.2
2,020,790	-		DDA3937_RS08945	0.85	+0.1
2,020,790	-		DDA3937_RS08945	0.85	+1.0
2,020,790	-		DDA3937_RS08945	0.85	+0.8
2,020,791	+		DDA3937_RS08945	0.85	-0.8
2,020,791	+		DDA3937_RS08945	0.85	-0.9
2,020,858	-				-0.9
2,020,858	-				-1.9
2,020,858	-				-1.5
2,021,081	-		DDA3937_RS08950	0.16	-2.7
2,021,116	+		DDA3937_RS08950	0.19	-0.3
2,021,116	+		DDA3937_RS08950	0.19	+0.5
2,021,163	-		DDA3937_RS08950	0.24	-1.5
2,021,237	-		DDA3937_RS08950	0.32	+0.5
2,021,334	+		DDA3937_RS08950	0.41	-2.4
2,021,334	+		DDA3937_RS08950	0.41	-0.2
2,021,334	+		DDA3937_RS08950	0.41	-0.1
2,021,334	+		DDA3937_RS08950	0.41	+0.2
2,021,335	-		DDA3937_RS08950	0.41	+1.0
2,021,335	-		DDA3937_RS08950	0.41	+0.9
2,021,335	-		DDA3937_RS08950	0.41	+0.5
2,021,335	-		DDA3937_RS08950	0.41	-3.0
2,021,471	-		DDA3937_RS08950	0.55	-0.8
2,021,612	+		DDA3937_RS08950	0.69	-0.8
2,021,613	-		DDA3937_RS08950	0.69	-0.1
2,021,613	-		DDA3937_RS08950	0.69	-0.5
2,021,675	+		DDA3937_RS08950	0.76	-0.8
2,021,675	+		DDA3937_RS08950	0.76	+0.7
2,021,675	+		DDA3937_RS08950	0.76	+0.9
2,021,676	-		DDA3937_RS08950	0.76	-0.5
2,021,676	-		DDA3937_RS08950	0.76	+0.2
2,021,676	-		DDA3937_RS08950	0.76	-2.2
2,021,677	+		DDA3937_RS08950	0.76	+0.9
2,021,677	+		DDA3937_RS08950	0.76	+1.9
2,021,677	+		DDA3937_RS08950	0.76	-2.2
2,021,678	-		DDA3937_RS08950	0.76	+0.9
2,021,678	-		DDA3937_RS08950	0.76	-0.1
2,021,809	+		DDA3937_RS08950	0.89	-1.0
2,021,809	+		DDA3937_RS08950	0.89	+4.1
2,021,809	+		DDA3937_RS08950	0.89	-0.8
2,021,809	+		DDA3937_RS08950	0.89	+0.4
2,021,810	-		DDA3937_RS08950	0.89	-0.1
2,021,810	-		DDA3937_RS08950	0.89	+2.8
2,021,810	-		DDA3937_RS08950	0.89	-1.3
2,021,810	-		DDA3937_RS08950	0.89	+1.8
2,021,815	+		DDA3937_RS08950	0.90	+0.5
2,021,815	+		DDA3937_RS08950	0.90	-1.2
2,021,816	-				-1.5
2,021,816	-				-2.8
2,021,816	-				-0.5
2,021,816	-				-0.5
2,021,816	-				-1.8
2,021,816	-				+0.5
2,021,816	-				+0.5
2,021,817	+				+0.0
2,021,817	+				+0.2
2,021,817	+				-1.7
2,021,817	+				-1.4
2,021,817	+				+0.7
2,021,817	+				+1.6
2,021,817	+				-1.1
2,021,818	-				-2.5
2,021,818	-				+0.9
2,021,818	-				-0.5
2,021,818	-				+0.8
2,021,818	-				+1.1
2,021,857	+				-1.2