Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08935

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,016,440	+		DDA3937_RS08930	0.16	-0.8
2,016,440	+		DDA3937_RS08930	0.16	-1.1
2,016,441	-		DDA3937_RS08930	0.16	-0.3
2,016,441	-		DDA3937_RS08930	0.16	-1.1
2,016,441	-		DDA3937_RS08930	0.16	+3.8
2,016,441	-		DDA3937_RS08930	0.16	-0.5
2,016,441	-		DDA3937_RS08930	0.16	-2.1
2,016,444	+		DDA3937_RS08930	0.17	+1.2
2,016,444	+		DDA3937_RS08930	0.17	-0.5
2,016,444	+		DDA3937_RS08930	0.17	-0.1
2,016,444	+		DDA3937_RS08930	0.17	-0.5
2,016,444	+		DDA3937_RS08930	0.17	-1.0
2,016,444	+		DDA3937_RS08930	0.17	-0.5
2,016,445	-		DDA3937_RS08930	0.17	-2.1
2,016,445	-		DDA3937_RS08930	0.17	-2.9
2,016,522	+		DDA3937_RS08930	0.31	+1.7
2,016,523	-		DDA3937_RS08930	0.31	+1.5
2,016,523	-		DDA3937_RS08930	0.31	+1.3
2,016,523	-		DDA3937_RS08930	0.31	-1.2
2,016,541	-		DDA3937_RS08930	0.35	-1.3
2,016,578	+		DDA3937_RS08930	0.42	+0.9
2,016,578	+		DDA3937_RS08930	0.42	-0.2
2,016,714	+		DDA3937_RS08930	0.67	-1.6
2,016,715	-		DDA3937_RS08930	0.67	-0.5
2,016,715	-		DDA3937_RS08930	0.67	-2.1
2,016,715	-		DDA3937_RS08930	0.67	-1.1
2,016,716	+		DDA3937_RS08930	0.68	+3.5
2,016,716	+		DDA3937_RS08930	0.68	-1.1
2,016,716	+				-0.8
2,016,717	-		DDA3937_RS08930	0.68	-0.5
2,016,717	-		DDA3937_RS08930	0.68	+1.2
2,016,717	-		DDA3937_RS08930	0.68	-2.5
2,016,717	-		DDA3937_RS08930	0.68	-3.0
2,016,873	+				+0.3
2,016,873	+				-1.1
2,016,873	+				+1.1
2,016,873	+				-1.5
2,016,874	-				+0.5
2,016,874	-				-1.3
2,016,875	+				-0.8
2,016,875	+				-3.4
2,016,875	+				+0.7
2,016,875	+				+0.6
2,016,876	-				+0.4
2,016,876	-				-2.0
2,016,876	-				-0.8
2,016,876	-				-3.7
2,016,876	-				+2.2
2,016,876	-				-1.7
2,016,906	+				-0.8
2,016,906	+				+1.3
2,016,906	+				-2.2
2,016,906	+				-0.1
2,016,906	+				-1.1
2,016,906	+				-0.8
2,016,907	-				-0.3
2,016,907	-				+0.1
2,016,907	-				+0.1
2,016,914	+				-0.8
2,016,914	+				-0.5
2,016,915	-				+0.5
2,016,915	-				+2.1
2,016,915	-				-1.1
2,016,915	-				-1.4
2,016,920	-				-1.3
2,016,920	-				-0.7
2,016,990	+				+2.1
2,016,990	+				-1.1
2,016,990	+				-0.7
2,016,990	+				-1.3
2,016,990	+				-1.0
2,016,993	+				-0.1
2,016,993	+				-1.0
2,016,993	+				-0.5
2,016,993	+				+0.4
2,016,994	-				-0.9
2,016,994	-				-0.8
2,016,994	-				-1.1
2,016,994	-				+0.3
2,016,994	-				-0.8
2,016,994	-				+1.3
2,016,999	+				-2.8
2,016,999	+				-0.1
2,016,999	+				-0.1
2,017,004	+				-2.3
2,017,004	+				+0.0
2,017,004	+				-0.1
2,017,004	+				+0.5
2,017,004	+				-1.1
2,017,005	-				-0.8
2,017,005	-				-2.1
2,017,005	-				-0.1
2,017,005	-				-0.7
2,017,034	+				-1.8
2,017,034	+				-2.1
2,017,034	+				-1.2
2,017,142	+				-2.4
2,017,206	+				+0.3
2,017,207	-				-0.8
2,017,207	-				+0.9
2,017,207	-				-1.3
2,017,212	-				+2.5
2,017,316	+				-1.7
2,017,316	+				+1.0
2,017,352	-				-0.1
2,017,352	-				-0.8
2,017,361	-				-0.5
2,017,373	-				-0.4
2,017,394	-				-0.5
2,017,422	+				+2.6
2,017,422	+				-0.5
2,017,423	-				-1.1
2,017,423	-				-0.8
2,017,423	-				-0.8
2,017,423	-				-0.7
2,017,423	-				+1.5
2,017,425	+				-1.7
2,017,425	+				-1.1
2,017,425	+				+0.6
2,017,425	+				+2.1
2,017,425	+				+1.6
2,017,425	+				-0.5
2,017,425	+				+0.1
2,017,425	+				-0.8
2,017,425	+				-1.8
2,017,426	-				-0.9
2,017,426	-				+0.5
2,017,426	-				-0.3
2,017,426	-				-1.3
2,017,426	-				-0.1
2,017,426	-				+0.5
2,017,429	+				-1.7
2,017,429	+				+0.1
2,017,429	+				-0.4
2,017,429	+				+1.7
2,017,430	-				-0.8
2,017,430	-				+2.5
2,017,582	-				-0.2
2,017,582	-				-2.1
2,017,623	+		DDA3937_RS08935	0.12	-2.6
2,017,624	-		DDA3937_RS08935	0.12	-1.6
2,017,635	+		DDA3937_RS08935	0.13	-1.1
2,017,635	+				+1.5
2,017,641	+		DDA3937_RS08935	0.13	-1.5
2,017,641	+		DDA3937_RS08935	0.13	+0.3
2,017,642	-		DDA3937_RS08935	0.14	-1.1
2,017,642	-		DDA3937_RS08935	0.14	+1.7
2,017,652	+		DDA3937_RS08935	0.14	-1.3
2,017,652	+		DDA3937_RS08935	0.14	-0.5
2,017,653	-		DDA3937_RS08935	0.14	-1.1
2,017,653	-		DDA3937_RS08935	0.14	+1.5
2,017,787	+		DDA3937_RS08935	0.23	+1.2
2,017,787	+		DDA3937_RS08935	0.23	-3.4
2,017,811	+		DDA3937_RS08935	0.24	+0.4
2,017,811	+		DDA3937_RS08935	0.24	+1.8
2,017,811	+		DDA3937_RS08935	0.24	+1.0
2,017,811	+		DDA3937_RS08935	0.24	-0.0
2,017,812	-				-0.5
2,017,836	+		DDA3937_RS08935	0.26	-0.8
2,017,836	+		DDA3937_RS08935	0.26	+0.7
2,017,837	-		DDA3937_RS08935	0.26	+2.3
2,017,837	-		DDA3937_RS08935	0.26	-1.3
2,017,938	+		DDA3937_RS08935	0.33	+0.6
2,018,052	+		DDA3937_RS08935	0.40	+3.1
2,018,052	+		DDA3937_RS08935	0.40	-1.0
2,018,055	+		DDA3937_RS08935	0.40	-0.5
2,018,055	+		DDA3937_RS08935	0.40	+2.0
2,018,055	+		DDA3937_RS08935	0.40	-0.8
2,018,056	-		DDA3937_RS08935	0.40	-1.7
2,018,079	+		DDA3937_RS08935	0.42	-0.9
2,018,080	-		DDA3937_RS08935	0.42	-0.8
2,018,091	-		DDA3937_RS08935	0.42	-0.8
2,018,116	-		DDA3937_RS08935	0.44	-0.7
2,018,116	-		DDA3937_RS08935	0.44	-1.1
2,018,241	+		DDA3937_RS08935	0.52	+0.2
2,018,242	-		DDA3937_RS08935	0.52	-1.1
2,018,242	-		DDA3937_RS08935	0.52	-2.3
2,018,262	+		DDA3937_RS08935	0.53	+0.5
2,018,262	+		DDA3937_RS08935	0.53	-1.8
2,018,262	+		DDA3937_RS08935	0.53	-2.7
2,018,262	+		DDA3937_RS08935	0.53	-0.1
2,018,263	-		DDA3937_RS08935	0.53	-0.9
2,018,263	-		DDA3937_RS08935	0.53	+1.0
2,018,263	-		DDA3937_RS08935	0.53	-0.5
2,018,263	-		DDA3937_RS08935	0.53	+0.7
2,018,263	-		DDA3937_RS08935	0.53	-1.8
2,018,263	-		DDA3937_RS08935	0.53	+0.5
2,018,263	-		DDA3937_RS08935	0.53	+1.7
2,018,263	-		DDA3937_RS08935	0.53	+1.5
2,018,325	+		DDA3937_RS08935	0.57	-1.1
2,018,377	-		DDA3937_RS08935	0.61	+1.5
2,018,401	+		DDA3937_RS08935	0.62	-0.8
2,018,401	+		DDA3937_RS08935	0.62	-1.1
2,018,443	-		DDA3937_RS08935	0.65	+0.4
2,018,448	+		DDA3937_RS08935	0.65	+0.5
2,018,449	-		DDA3937_RS08935	0.65	-0.8
2,018,449	-		DDA3937_RS08935	0.65	+2.0
2,018,473	+		DDA3937_RS08935	0.67	+0.5
2,018,474	-		DDA3937_RS08935	0.67	+1.2
2,018,520	+		DDA3937_RS08935	0.70	+0.8
2,018,521	-		DDA3937_RS08935	0.70	+0.5
2,018,521	-		DDA3937_RS08935	0.70	-0.2
2,018,522	+		DDA3937_RS08935	0.70	-2.2
2,018,523	-		DDA3937_RS08935	0.70	+1.9
2,018,559	+		DDA3937_RS08935	0.72	-2.3
2,018,559	+		DDA3937_RS08935	0.72	-0.1
2,018,559	+		DDA3937_RS08935	0.72	-2.4
2,018,559	+		DDA3937_RS08935	0.72	-1.4
2,018,560	-		DDA3937_RS08935	0.72	-0.5
2,018,560	-		DDA3937_RS08935	0.72	+0.5
2,018,560	-		DDA3937_RS08935	0.72	-0.0
2,018,560	-		DDA3937_RS08935	0.72	-2.1
2,018,560	-		DDA3937_RS08935	0.72	-2.5
2,018,560	-		DDA3937_RS08935	0.72	+0.1
2,018,562	-		DDA3937_RS08935	0.72	-0.4
2,018,682	+		DDA3937_RS08935	0.80	-1.4
2,018,739	+		DDA3937_RS08935	0.84	+0.6
2,018,739	+		DDA3937_RS08935	0.84	+1.4
2,018,740	-		DDA3937_RS08935	0.84	-1.5
2,018,740	-		DDA3937_RS08935	0.84	+0.7
2,018,740	-		DDA3937_RS08935	0.84	+1.0
2,018,745	+		DDA3937_RS08935	0.84	+0.6
2,018,745	+		DDA3937_RS08935	0.84	+3.4
2,018,746	-		DDA3937_RS08935	0.84	+0.8
2,018,746	-		DDA3937_RS08935	0.84	-0.1
2,018,754	+		DDA3937_RS08935	0.85	-1.1
2,018,755	-		DDA3937_RS08935	0.85	+1.8
2,018,755	-		DDA3937_RS08935	0.85	-0.4
2,018,829	+				-0.1
2,018,829	+		DDA3937_RS08935	0.90	-1.7
2,018,829	+		DDA3937_RS08935	0.90	+0.5
2,018,829	+		DDA3937_RS08935	0.90	-1.3
2,018,829	+		DDA3937_RS08935	0.90	-3.1
2,018,829	+		DDA3937_RS08935	0.90	+0.5
2,018,830	-		DDA3937_RS08935	0.90	-0.8
2,018,830	-		DDA3937_RS08935	0.90	+2.6
2,018,830	-		DDA3937_RS08935	0.90	+0.3
2,018,837	+				+0.7
2,018,883	+				+2.7
2,019,034	+				+0.1
2,019,034	+				+1.5
2,019,034	+				-0.6
2,019,035	-				-2.3
2,019,035	-				+2.1
2,019,035	-				-2.9
2,019,054	+				-2.1
2,019,054	+				-1.0
2,019,086	+				+1.4
2,019,092	+				+0.2
2,019,092	+				+1.5
2,019,102	+				-0.5
2,019,108	+				-0.5
2,019,108	+				-2.0
2,019,108	+				-1.7
2,019,108	+				+1.0
2,019,108	+				-3.0
2,019,108	+				-1.0
2,019,108	+				+2.1
2,019,108	+				+1.5
2,019,108	+				-1.1
2,019,108	+				-2.7
2,019,108	+				-1.2
2,019,108	+				+3.1
2,019,108	+				+0.1
2,019,109	-				-0.8
2,019,109	-				+0.9
2,019,109	-				+0.5
2,019,109	-				-1.4
2,019,109	-				-1.3
2,019,109	-				-1.3
2,019,109	-				-0.9
2,019,109	-				+2.1
2,019,167	-				-2.3
2,019,224	+		DDA3937_RS08940	0.12	-2.6
2,019,224	+		DDA3937_RS08940	0.12	-0.0
2,019,224	+		DDA3937_RS08940	0.12	+1.8
2,019,225	-		DDA3937_RS08940	0.12	-1.7
2,019,225	-		DDA3937_RS08940	0.12	+1.5
2,019,225	-		DDA3937_RS08940	0.12	-1.0
2,019,282	+		DDA3937_RS08940	0.18	+1.8
2,019,305	+		DDA3937_RS08940	0.20	-1.1
2,019,306	-		DDA3937_RS08940	0.20	+2.5
2,019,347	+		DDA3937_RS08940	0.25	-2.1
2,019,521	+		DDA3937_RS08940	0.43	+1.2
2,019,521	+		DDA3937_RS08940	0.43	+0.3
2,019,521	+		DDA3937_RS08940	0.43	-0.3
2,019,521	+		DDA3937_RS08940	0.43	-0.5
2,019,522	-		DDA3937_RS08940	0.43	+2.1
2,019,522	-		DDA3937_RS08940	0.43	+0.5
2,019,589	+		DDA3937_RS08940	0.50	-1.9
2,019,589	+		DDA3937_RS08940	0.50	-2.0
2,019,589	+		DDA3937_RS08940	0.50	-2.4
2,019,589	+		DDA3937_RS08940	0.50	+2.2
2,019,589	+		DDA3937_RS08940	0.50	-0.5
2,019,590	-		DDA3937_RS08940	0.50	+1.1
2,019,590	-		DDA3937_RS08940	0.50	+0.2
2,019,590	-		DDA3937_RS08940	0.50	-2.6
2,019,642	+		DDA3937_RS08940	0.55	+2.0
2,019,642	+		DDA3937_RS08940	0.55	-1.9
2,019,689	+		DDA3937_RS08940	0.60	+0.4
2,019,689	+		DDA3937_RS08940	0.60	-1.0
2,019,690	-		DDA3937_RS08940	0.60	-2.5
2,019,704	+		DDA3937_RS08940	0.62	-1.1
2,019,704	+		DDA3937_RS08940	0.62	+2.5
2,019,704	+		DDA3937_RS08940	0.62	-0.5
2,019,704	+		DDA3937_RS08940	0.62	-1.4
2,019,704	+		DDA3937_RS08940	0.62	+0.6
2,019,705	-		DDA3937_RS08940	0.62	-1.3
2,019,713	+		DDA3937_RS08940	0.63	-0.5
2,019,713	+		DDA3937_RS08940	0.63	+0.1
2,019,713	+		DDA3937_RS08940	0.63	-3.1
2,019,714	-				+1.5
2,019,714	-		DDA3937_RS08940	0.63	+2.1
2,019,714	-		DDA3937_RS08940	0.63	-2.0
2,019,714	-		DDA3937_RS08940	0.63	-2.2
2,019,752	+		DDA3937_RS08940	0.67	-0.4
2,019,753	-		DDA3937_RS08940	0.67	-2.2
2,019,774	-		DDA3937_RS08940	0.69	+1.0
2,019,793	+		DDA3937_RS08940	0.71	+2.8
2,019,793	+		DDA3937_RS08940	0.71	-1.5
2,019,793	+		DDA3937_RS08940	0.71	-0.9
2,019,873	+		DDA3937_RS08940	0.80	-0.9
2,019,881	+		DDA3937_RS08940	0.81	+1.1
2,019,881	+		DDA3937_RS08940	0.81	+1.7
2,019,882	-		DDA3937_RS08940	0.81	+0.5
2,019,882	-		DDA3937_RS08940	0.81	-0.5
2,019,882	-		DDA3937_RS08940	0.81	+0.1
2,019,882	-		DDA3937_RS08940	0.81	-0.7
2,019,882	-		DDA3937_RS08940	0.81	+0.2
2,019,882	-				+0.5
2,019,882	-		DDA3937_RS08940	0.81	+0.6
2,019,954	-		DDA3937_RS08940	0.88	-1.3