Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08595

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,938,629	+		DDA3937_RS08590	0.10	+1.2
1,938,677	-		DDA3937_RS08590	0.15	-1.1
1,938,774	+		DDA3937_RS08590	0.25	+0.1
1,938,774	+		DDA3937_RS08590	0.25	-1.5
1,938,774	+		DDA3937_RS08590	0.25	-0.4
1,938,775	-		DDA3937_RS08590	0.25	+1.5
1,938,775	-		DDA3937_RS08590	0.25	-2.1
1,938,775	-		DDA3937_RS08590	0.25	-1.5
1,938,775	-		DDA3937_RS08590	0.25	-2.2
1,938,930	-		DDA3937_RS08590	0.40	+1.1
1,939,124	+		DDA3937_RS08590	0.59	+0.3
1,939,125	-		DDA3937_RS08590	0.59	+0.2
1,939,125	-		DDA3937_RS08590	0.59	-0.8
1,939,126	+		DDA3937_RS08590	0.59	+1.1
1,939,183	+		DDA3937_RS08590	0.65	-2.1
1,939,184	-		DDA3937_RS08590	0.65	-2.3
1,939,184	-		DDA3937_RS08590	0.65	-1.2
1,939,187	+				-0.5
1,939,188	-		DDA3937_RS08590	0.65	-0.1
1,939,188	-		DDA3937_RS08590	0.65	+0.5
1,939,193	+		DDA3937_RS08590	0.66	-1.7
1,939,193	+		DDA3937_RS08590	0.66	-0.6
1,939,193	+		DDA3937_RS08590	0.66	-0.8
1,939,193	+		DDA3937_RS08590	0.66	-0.2
1,939,194	-		DDA3937_RS08590	0.66	-1.3
1,939,194	-		DDA3937_RS08590	0.66	+1.9
1,939,196	+		DDA3937_RS08590	0.66	-1.5
1,939,196	+		DDA3937_RS08590	0.66	-1.9
1,939,217	-		DDA3937_RS08590	0.68	-0.3
1,939,250	+		DDA3937_RS08590	0.71	+3.3
1,939,250	+		DDA3937_RS08590	0.71	-2.2
1,939,251	-		DDA3937_RS08590	0.71	-1.3
1,939,251	-		DDA3937_RS08590	0.71	-0.0
1,939,251	-		DDA3937_RS08590	0.71	-3.4
1,939,251	-		DDA3937_RS08590	0.71	-2.1
1,939,253	+		DDA3937_RS08590	0.72	+0.7
1,939,253	+		DDA3937_RS08590	0.72	-1.5
1,939,253	+		DDA3937_RS08590	0.72	-1.1
1,939,254	-		DDA3937_RS08590	0.72	-2.6
1,939,324	+		DDA3937_RS08590	0.79	+0.2
1,939,324	+		DDA3937_RS08590	0.79	+0.0
1,939,324	+		DDA3937_RS08590	0.79	+1.2
1,939,325	-		DDA3937_RS08590	0.79	-0.5
1,939,325	-		DDA3937_RS08590	0.79	+1.0
1,939,325	-		DDA3937_RS08590	0.79	-1.8
1,939,538	+				-0.8
1,939,539	-				-0.2
1,939,562	+				-1.2
1,939,562	+				+1.0
1,939,563	-				-2.0
1,939,567	+				-2.1
1,939,567	+				-1.8
1,939,567	+				-2.1
1,939,567	+				+0.0
1,939,568	-				-1.9
1,939,752	-		DDA3937_RS08595	0.11	-2.4
1,939,799	+		DDA3937_RS08595	0.14	+2.6
1,939,800	-		DDA3937_RS08595	0.14	+3.1
1,939,800	-		DDA3937_RS08595	0.14	+1.2
1,939,800	-		DDA3937_RS08595	0.14	+0.7
1,939,802	+		DDA3937_RS08595	0.14	+1.1
1,939,802	+		DDA3937_RS08595	0.14	-1.9
1,939,807	+		DDA3937_RS08595	0.15	+0.2
1,939,808	-		DDA3937_RS08595	0.15	-2.7
1,940,023	-		DDA3937_RS08595	0.28	+1.7
1,940,023	-		DDA3937_RS08595	0.28	+0.7
1,940,033	+		DDA3937_RS08595	0.29	+0.2
1,940,037	+		DDA3937_RS08595	0.29	-0.7
1,940,037	+		DDA3937_RS08595	0.29	-0.2
1,940,037	+		DDA3937_RS08595	0.29	-0.7
1,940,038	-		DDA3937_RS08595	0.29	-0.9
1,940,038	-		DDA3937_RS08595	0.29	+0.5
1,940,214	+		DDA3937_RS08595	0.40	-1.2
1,940,234	+		DDA3937_RS08595	0.41	-0.1
1,940,270	+		DDA3937_RS08595	0.44	-0.1
1,940,271	-		DDA3937_RS08595	0.44	+0.5
1,940,271	-		DDA3937_RS08595	0.44	-1.5
1,940,271	-		DDA3937_RS08595	0.44	+1.0
1,940,271	-		DDA3937_RS08595	0.44	+1.3
1,940,685	+		DDA3937_RS08595	0.70	+1.2
1,940,685	+		DDA3937_RS08595	0.70	-1.8
1,940,685	+		DDA3937_RS08595	0.70	+0.5
1,940,685	+		DDA3937_RS08595	0.70	-2.8
1,940,685	+		DDA3937_RS08595	0.70	-2.4
1,940,685	+		DDA3937_RS08595	0.70	-1.9
1,940,685	+		DDA3937_RS08595	0.70	+1.8
1,940,685	+		DDA3937_RS08595	0.70	-1.7
1,940,685	+		DDA3937_RS08595	0.70	+1.1
1,940,685	+		DDA3937_RS08595	0.70	-1.9
1,940,685	+		DDA3937_RS08595	0.70	+0.2
1,940,685	+		DDA3937_RS08595	0.70	-2.1
1,940,685	+		DDA3937_RS08595	0.70	+0.8
1,940,686	-		DDA3937_RS08595	0.70	-3.2
1,940,686	-		DDA3937_RS08595	0.70	-1.7
1,940,686	-		DDA3937_RS08595	0.70	-1.1
1,940,686	-		DDA3937_RS08595	0.70	-1.5
1,940,686	-		DDA3937_RS08595	0.70	-0.5
1,940,686	-		DDA3937_RS08595	0.70	-0.1
1,940,688	-		DDA3937_RS08595	0.70	+1.3
1,940,764	-		DDA3937_RS08595	0.75	-1.1
1,940,793	+		DDA3937_RS08595	0.76	+0.7
1,940,793	+		DDA3937_RS08595	0.76	-2.2
1,940,793	+		DDA3937_RS08595	0.76	-0.8
1,940,794	-		DDA3937_RS08595	0.77	-1.9
1,940,794	-		DDA3937_RS08595	0.77	+1.0
1,940,794	-		DDA3937_RS08595	0.77	-0.5
1,940,794	-		DDA3937_RS08595	0.77	-1.2
1,940,797	+		DDA3937_RS08595	0.77	+1.1
1,940,797	+		DDA3937_RS08595	0.77	-0.5
1,940,797	+		DDA3937_RS08595	0.77	-0.8
1,940,797	+		DDA3937_RS08595	0.77	-2.1
1,940,798	-		DDA3937_RS08595	0.77	-0.3
1,940,798	-		DDA3937_RS08595	0.77	-0.8
1,940,798	-		DDA3937_RS08595	0.77	+0.3
1,940,798	-		DDA3937_RS08595	0.77	-2.2
1,940,798	-		DDA3937_RS08595	0.77	-0.5
1,940,798	-		DDA3937_RS08595	0.77	-0.7
1,940,798	-		DDA3937_RS08595	0.77	-1.3
1,940,807	+		DDA3937_RS08595	0.77	-0.1
1,940,807	+				+0.5
1,940,825	+		DDA3937_RS08595	0.78	+0.3
1,940,826	-		DDA3937_RS08595	0.79	-2.8
1,941,069	+				-0.5
1,941,070	-				+0.5
1,941,070	-				-1.3
1,941,070	-				-0.5
1,941,071	+				-1.6
1,941,072	-				-1.3
1,941,072	-				+3.6
1,941,098	+				-0.9
1,941,169	+				-1.1
1,941,169	+				-2.6
1,941,414	+		DDA3937_RS08600	0.24	+1.1
1,941,833	+		DDA3937_RS08600	0.65	+1.9
1,941,833	+		DDA3937_RS08600	0.65	-2.1
1,941,834	-		DDA3937_RS08600	0.65	+0.8
1,941,834	-		DDA3937_RS08600	0.65	+0.6
1,941,834	-		DDA3937_RS08600	0.65	-0.6
1,941,973	+		DDA3937_RS08600	0.78	-0.4
1,941,973	+		DDA3937_RS08600	0.78	-0.5
1,941,974	-		DDA3937_RS08600	0.78	-2.2
1,941,974	-		DDA3937_RS08600	0.78	-0.5
1,941,976	+		DDA3937_RS08600	0.78	-0.6
1,941,976	+		DDA3937_RS08600	0.78	-1.5
1,941,976	+		DDA3937_RS08600	0.78	-0.1
1,941,976	+		DDA3937_RS08600	0.78	-1.8
1,941,977	-		DDA3937_RS08600	0.79	-0.1
1,941,977	-		DDA3937_RS08600	0.79	+1.0
1,941,977	-				+3.1
1,941,977	-		DDA3937_RS08600	0.79	-0.5
1,941,977	-		DDA3937_RS08600	0.79	+0.6
1,941,977	-		DDA3937_RS08600	0.79	-1.1
1,942,117	-				+1.0