Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08375

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,895,102	-		DDA3937_RS08370	0.64	-1.1
1,895,102	-		DDA3937_RS08370	0.64	+0.0
1,895,110	-		DDA3937_RS08370	0.65	-3.0
1,895,139	+		DDA3937_RS08370	0.67	-0.0
1,895,140	-		DDA3937_RS08370	0.67	-0.2
1,895,178	+		DDA3937_RS08370	0.71	-1.2
1,895,180	+		DDA3937_RS08370	0.71	+1.4
1,895,180	+		DDA3937_RS08370	0.71	-0.1
1,895,180	+		DDA3937_RS08370	0.71	-1.7
1,895,181	-				+4.1
1,895,181	-		DDA3937_RS08370	0.71	-1.0
1,895,181	-				+0.2
1,895,181	-		DDA3937_RS08370	0.71	-3.0
1,895,181	-		DDA3937_RS08370	0.71	+1.4
1,895,224	+		DDA3937_RS08370	0.75	-2.2
1,895,225	-		DDA3937_RS08370	0.75	+1.2
1,895,225	-		DDA3937_RS08370	0.75	-0.8
1,895,226	+		DDA3937_RS08370	0.75	+0.9
1,895,227	-		DDA3937_RS08370	0.75	-1.3
1,895,277	+		DDA3937_RS08370	0.79	+1.9
1,895,282	+		DDA3937_RS08370	0.80	+0.5
1,895,282	+		DDA3937_RS08370	0.80	+0.7
1,895,282	+		DDA3937_RS08370	0.80	-0.3
1,895,283	-		DDA3937_RS08370	0.80	+0.2
1,895,350	-		DDA3937_RS08370	0.86	+1.5
1,895,350	-		DDA3937_RS08370	0.86	+1.5
1,895,361	-		DDA3937_RS08370	0.86	-2.1
1,895,363	+		DDA3937_RS08370	0.87	+2.7
1,895,363	+		DDA3937_RS08370	0.87	-2.1
1,895,363	+		DDA3937_RS08370	0.87	+0.7
1,895,363	+		DDA3937_RS08370	0.87	+0.9
1,895,364	-		DDA3937_RS08370	0.87	-1.5
1,895,371	+		DDA3937_RS08370	0.87	-2.0
1,895,372	-		DDA3937_RS08370	0.87	-1.3
1,895,393	+		DDA3937_RS08370	0.89	-0.7
1,895,417	+				-2.3
1,895,531	-				-0.1
1,895,541	+				-0.2
1,895,597	+				-1.7
1,895,598	-				-1.3
1,895,598	-				-0.8
1,895,601	+				-2.1
1,895,601	+				+1.2
1,895,601	+				+2.3
1,895,601	+				-2.4
1,895,601	+				-0.7
1,895,601	+				-1.3
1,895,601	+				+1.0
1,895,601	+				+0.5
1,895,601	+				-0.1
1,895,601	+				-0.5
1,895,602	-				-0.1
1,895,602	-				-0.1
1,895,602	-				-0.5
1,895,602	-				+1.5
1,895,602	-				-0.3
1,895,633	+				+0.5
1,895,633	+				+2.0
1,895,633	+				-1.3
1,895,633	+				-0.5
1,895,633	+				-0.5
1,895,633	+				-0.3
1,895,634	-				-2.5
1,895,634	-				-1.3
1,895,634	-				-1.1
1,895,634	-				-0.4
1,895,634	-				-2.0
1,895,634	-				+2.7
1,895,634	-				+0.2
1,895,634	-				-0.5
1,895,634	-				-0.4
1,895,634	-				+0.4
1,895,682	+				+0.3
1,895,682	+				-1.7
1,895,769	-				-2.2
1,895,838	+				-2.3
1,895,838	+				+1.1
1,895,839	-				-0.0
1,895,871	+				-1.1
1,895,871	+				+3.7
1,895,872	-				+0.9
1,895,872	-				-1.5
1,895,876	+				-1.1
1,895,879	+				+0.3
1,895,879	+				-1.5
1,895,901	-				-1.5
1,895,903	+				-2.8
1,895,903	+				-1.8
1,895,903	+				+0.4
1,895,907	+				-1.7
1,895,907	+				-0.5
1,895,908	-				-3.2
1,895,908	-				+0.7
1,895,908	-				-0.8
1,895,914	+				-1.1
1,895,950	+				-0.5
1,895,951	-				-2.3
1,895,951	-				+1.4
1,895,951	-				+0.6
1,895,951	-				+0.5
1,895,970	+				-0.9
1,895,976	+				+1.6
1,895,976	+				-0.8
1,895,977	-				-1.7
1,896,041	-				-0.0
1,896,078	+				+0.5
1,896,081	-				-1.5
1,896,178	-				-0.5
1,896,178	-				-2.8
1,896,254	+		DDA3937_RS08375	0.11	-1.3
1,896,442	+		DDA3937_RS08375	0.24	-2.6
1,896,467	-		DDA3937_RS08375	0.26	+0.7
1,896,633	-		DDA3937_RS08375	0.37	-1.9
1,896,677	+		DDA3937_RS08375	0.40	-2.7
1,896,678	-		DDA3937_RS08375	0.40	-1.2
1,896,727	+		DDA3937_RS08375	0.44	-1.1
1,896,731	-		DDA3937_RS08375	0.44	+0.5
1,896,773	+		DDA3937_RS08375	0.47	-1.8
1,896,922	+		DDA3937_RS08375	0.57	-0.5
1,897,024	-		DDA3937_RS08375	0.65	-0.4
1,897,024	-		DDA3937_RS08375	0.65	-1.8
1,897,234	+		DDA3937_RS08375	0.79	-1.3
1,897,416	-				-1.1
1,897,497	-				-0.8
1,897,527	+				-3.1
1,897,527	+				-0.8
1,897,528	-				+0.5
1,897,653	+				-0.5
1,897,654	-				-0.5
1,897,677	+				+1.3
1,897,677	+				-0.5
1,897,678	-				+0.7
1,897,678	-				+1.5
1,897,734	-				+1.1
1,897,734	-				+0.5
1,897,749	+				+0.6
1,897,749	+				-0.2
1,897,749	+				-2.9
1,897,749	+				-1.8
1,897,749	+				-1.3
1,897,749	+				-1.9
1,897,750	-				-2.3
1,897,750	-				-2.7
1,897,750	-				+1.6
1,897,824	+				-3.2
1,897,824	+				+1.2
1,897,824	+				+0.0
1,897,825	-				-1.5
1,897,825	-				-0.2
1,897,826	+				-0.8
1,897,826	+				-1.5
1,897,848	+				+0.5
1,897,856	+				+1.5
1,897,878	+				-0.1
1,897,892	-				+0.0
1,897,943	+				-1.0
1,897,943	+				-1.5
1,897,943	+				+0.6
1,897,943	+				+1.9
1,897,943	+				-1.5
1,897,943	+				+0.6
1,897,943	+				+0.5
1,897,943	+				+0.1
1,897,944	-				-0.5
1,897,944	-				-1.8
1,897,944	-				+0.8
1,897,944	-				-1.3
1,897,969	-				-2.8
1,897,969	-				+0.9
1,897,998	-				-2.3
1,898,000	-				-2.8
1,898,065	+				-0.5
1,898,066	-				-0.1
1,898,066	-				+1.5
1,898,168	+		DDA3937_RS08380	0.16	-1.3
1,898,168	+		DDA3937_RS08380	0.16	-1.7
1,898,169	-		DDA3937_RS08380	0.16	-1.5
1,898,169	-		DDA3937_RS08380	0.16	-0.5
1,898,187	-		DDA3937_RS08380	0.19	+1.2
1,898,187	-		DDA3937_RS08380	0.19	-1.4
1,898,187	-		DDA3937_RS08380	0.19	-1.7
1,898,187	-		DDA3937_RS08380	0.19	-0.3
1,898,265	+		DDA3937_RS08380	0.30	-0.8
1,898,265	+		DDA3937_RS08380	0.30	-2.1
1,898,265	+		DDA3937_RS08380	0.30	-1.5
1,898,265	+		DDA3937_RS08380	0.30	-0.9
1,898,265	+		DDA3937_RS08380	0.30	+0.1
1,898,266	-		DDA3937_RS08380	0.30	-1.1
1,898,266	-		DDA3937_RS08380	0.30	+1.1
1,898,266	-		DDA3937_RS08380	0.30	+0.5
1,898,266	-				-0.1
1,898,266	-		DDA3937_RS08380	0.30	-0.7
1,898,266	-		DDA3937_RS08380	0.30	-1.5
1,898,266	-		DDA3937_RS08380	0.30	-0.8
1,898,266	-		DDA3937_RS08380	0.30	-1.8
1,898,266	-		DDA3937_RS08380	0.30	-1.5
1,898,266	-		DDA3937_RS08380	0.30	-1.0
1,898,266	-		DDA3937_RS08380	0.30	+1.0
1,898,383	+		DDA3937_RS08380	0.47	-0.8
1,898,384	-		DDA3937_RS08380	0.47	-2.0
1,898,384	-		DDA3937_RS08380	0.47	-0.7
1,898,390	-		DDA3937_RS08380	0.48	+0.1
1,898,390	-		DDA3937_RS08380	0.48	-2.4
1,898,390	-		DDA3937_RS08380	0.48	-0.3
1,898,395	+		DDA3937_RS08380	0.49	+0.1
1,898,395	+		DDA3937_RS08380	0.49	-1.5
1,898,395	+		DDA3937_RS08380	0.49	+1.6
1,898,395	+				-0.5
1,898,395	+		DDA3937_RS08380	0.49	-1.3
1,898,396	-		DDA3937_RS08380	0.49	-1.0
1,898,396	-		DDA3937_RS08380	0.49	+3.2
1,898,396	-		DDA3937_RS08380	0.49	-2.1
1,898,396	-				-0.1
1,898,396	-		DDA3937_RS08380	0.49	-0.7
1,898,396	-		DDA3937_RS08380	0.49	-0.5
1,898,402	-		DDA3937_RS08380	0.50	-0.1
1,898,402	-		DDA3937_RS08380	0.50	+0.1
1,898,428	+		DDA3937_RS08380	0.54	-1.0
1,898,428	+		DDA3937_RS08380	0.54	-2.8
1,898,429	-		DDA3937_RS08380	0.54	-0.0
1,898,467	+		DDA3937_RS08380	0.59	-0.0
1,898,467	+		DDA3937_RS08380	0.59	+2.8
1,898,467	+		DDA3937_RS08380	0.59	-1.1
1,898,468	-		DDA3937_RS08380	0.60	+1.1
1,898,468	-		DDA3937_RS08380	0.60	-2.0
1,898,468	-		DDA3937_RS08380	0.60	-1.8
1,898,468	-		DDA3937_RS08380	0.60	-3.3
1,898,514	-		DDA3937_RS08380	0.66	+1.6