Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08370

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,893,398	+				+0.8
1,893,431	+				+0.3
1,893,482	-		DDA3937_RS08365	0.11	-0.5
1,893,669	-		DDA3937_RS08365	0.32	-1.1
1,893,708	-		DDA3937_RS08365	0.36	-1.5
1,893,731	+		DDA3937_RS08365	0.38	-2.9
1,893,893	-		DDA3937_RS08365	0.57	-0.5
1,893,955	-		DDA3937_RS08365	0.64	-2.4
1,893,967	-		DDA3937_RS08365	0.65	+3.1
1,894,118	+		DDA3937_RS08365	0.82	-1.5
1,894,119	-		DDA3937_RS08365	0.82	-0.8
1,894,211	+				+1.0
1,894,279	-				-2.1
1,894,375	+				-1.1
1,894,378	+				-0.5
1,894,378	+				-1.1
1,894,379	-				-2.7
1,894,382	+				-1.7
1,894,382	+				-2.2
1,894,383	-				-0.5
1,894,383	-				+1.1
1,894,419	-				-0.8
1,894,419	-				-0.5
1,894,419	-				+1.1
1,894,419	-				+1.1
1,894,420	+				+0.2
1,894,420	+				-1.1
1,894,421	-				-0.3
1,894,421	-				+0.9
1,894,421	-				-1.3
1,894,466	+				+0.5
1,894,466	+				-2.0
1,894,467	-				-1.1
1,894,486	+		DDA3937_RS08370	0.11	+2.3
1,894,486	+		DDA3937_RS08370	0.11	+2.1
1,894,486	+		DDA3937_RS08370	0.11	-0.5
1,894,486	+		DDA3937_RS08370	0.11	-2.1
1,894,486	+		DDA3937_RS08370	0.11	+1.2
1,894,487	-		DDA3937_RS08370	0.11	-0.5
1,894,487	-		DDA3937_RS08370	0.11	-1.1
1,894,489	+		DDA3937_RS08370	0.11	-1.1
1,894,593	+		DDA3937_RS08370	0.20	-1.2
1,894,594	-				-0.5
1,894,599	+		DDA3937_RS08370	0.21	-3.1
1,894,600	-		DDA3937_RS08370	0.21	-0.8
1,894,620	-		DDA3937_RS08370	0.23	-1.3
1,894,638	+		DDA3937_RS08370	0.24	+0.5
1,894,638	+		DDA3937_RS08370	0.24	-2.4
1,894,638	+		DDA3937_RS08370	0.24	+0.3
1,894,639	-		DDA3937_RS08370	0.24	-0.5
1,894,641	+		DDA3937_RS08370	0.24	-1.5
1,894,679	-		DDA3937_RS08370	0.28	-0.4
1,894,698	+		DDA3937_RS08370	0.29	+0.0
1,894,698	+		DDA3937_RS08370	0.29	+0.0
1,894,699	-		DDA3937_RS08370	0.29	+0.7
1,894,743	-		DDA3937_RS08370	0.33	-1.3
1,894,765	-		DDA3937_RS08370	0.35	+3.4
1,894,786	+		DDA3937_RS08370	0.37	-1.5
1,894,786	+		DDA3937_RS08370	0.37	-2.4
1,894,786	+				-1.1
1,894,786	+		DDA3937_RS08370	0.37	+0.3
1,894,786	+		DDA3937_RS08370	0.37	-1.3
1,894,786	+		DDA3937_RS08370	0.37	-0.7
1,894,786	+		DDA3937_RS08370	0.37	-2.0
1,894,787	-		DDA3937_RS08370	0.37	-2.3
1,894,787	-		DDA3937_RS08370	0.37	-0.5
1,894,787	-		DDA3937_RS08370	0.37	-0.7
1,894,787	-		DDA3937_RS08370	0.37	-1.0
1,894,876	+		DDA3937_RS08370	0.45	-2.4
1,894,878	+		DDA3937_RS08370	0.45	-1.1
1,894,893	-		DDA3937_RS08370	0.46	-0.4
1,894,911	-		DDA3937_RS08370	0.48	+0.8
1,894,911	-		DDA3937_RS08370	0.48	-0.1
1,894,953	-		DDA3937_RS08370	0.51	+1.8
1,894,953	-		DDA3937_RS08370	0.51	+1.3
1,894,957	-		DDA3937_RS08370	0.52	-1.1
1,894,957	-		DDA3937_RS08370	0.52	-2.1
1,894,992	-		DDA3937_RS08370	0.55	-1.4
1,895,010	+		DDA3937_RS08370	0.56	-0.0
1,895,010	+		DDA3937_RS08370	0.56	-1.9
1,895,010	+		DDA3937_RS08370	0.56	-2.1
1,895,011	-		DDA3937_RS08370	0.56	-1.8
1,895,011	-		DDA3937_RS08370	0.56	-0.8
1,895,012	+				+0.5
1,895,012	+		DDA3937_RS08370	0.56	+0.3
1,895,013	-		DDA3937_RS08370	0.56	-1.3
1,895,101	+		DDA3937_RS08370	0.64	-0.1
1,895,101	+		DDA3937_RS08370	0.64	+0.3
1,895,101	+		DDA3937_RS08370	0.64	-2.4
1,895,101	+		DDA3937_RS08370	0.64	-0.8
1,895,102	-		DDA3937_RS08370	0.64	-1.1
1,895,102	-		DDA3937_RS08370	0.64	+0.0
1,895,110	-		DDA3937_RS08370	0.65	-3.0
1,895,139	+		DDA3937_RS08370	0.67	-0.0
1,895,140	-		DDA3937_RS08370	0.67	-0.2
1,895,178	+		DDA3937_RS08370	0.71	-1.2
1,895,180	+		DDA3937_RS08370	0.71	+1.4
1,895,180	+		DDA3937_RS08370	0.71	-0.1
1,895,180	+		DDA3937_RS08370	0.71	-1.7
1,895,181	-				+4.1
1,895,181	-		DDA3937_RS08370	0.71	-1.0
1,895,181	-				+0.2
1,895,181	-		DDA3937_RS08370	0.71	-3.0
1,895,181	-		DDA3937_RS08370	0.71	+1.4
1,895,224	+		DDA3937_RS08370	0.75	-2.2
1,895,225	-		DDA3937_RS08370	0.75	+1.2
1,895,225	-		DDA3937_RS08370	0.75	-0.8
1,895,226	+		DDA3937_RS08370	0.75	+0.9
1,895,227	-		DDA3937_RS08370	0.75	-1.3
1,895,277	+		DDA3937_RS08370	0.79	+1.9
1,895,282	+		DDA3937_RS08370	0.80	+0.5
1,895,282	+		DDA3937_RS08370	0.80	+0.7
1,895,282	+		DDA3937_RS08370	0.80	-0.3
1,895,283	-		DDA3937_RS08370	0.80	+0.2
1,895,350	-		DDA3937_RS08370	0.86	+1.5
1,895,350	-		DDA3937_RS08370	0.86	+1.5
1,895,361	-		DDA3937_RS08370	0.86	-2.1
1,895,363	+		DDA3937_RS08370	0.87	+2.7
1,895,363	+		DDA3937_RS08370	0.87	-2.1
1,895,363	+		DDA3937_RS08370	0.87	+0.7
1,895,363	+		DDA3937_RS08370	0.87	+0.9
1,895,364	-		DDA3937_RS08370	0.87	-1.5
1,895,371	+		DDA3937_RS08370	0.87	-2.0
1,895,372	-		DDA3937_RS08370	0.87	-1.3
1,895,393	+		DDA3937_RS08370	0.89	-0.7
1,895,417	+				-2.3
1,895,531	-				-0.1
1,895,541	+				-0.2
1,895,597	+				-1.7
1,895,598	-				-1.3
1,895,598	-				-0.8
1,895,601	+				-2.1
1,895,601	+				+1.2
1,895,601	+				+2.3
1,895,601	+				-2.4
1,895,601	+				-0.7
1,895,601	+				-1.3
1,895,601	+				+1.0
1,895,601	+				+0.5
1,895,601	+				-0.1
1,895,601	+				-0.5
1,895,602	-				-0.1
1,895,602	-				-0.1
1,895,602	-				-0.5
1,895,602	-				+1.5
1,895,602	-				-0.3
1,895,633	+				+0.5
1,895,633	+				+2.0
1,895,633	+				-1.3
1,895,633	+				-0.5
1,895,633	+				-0.5
1,895,633	+				-0.3
1,895,634	-				-2.5
1,895,634	-				-1.3
1,895,634	-				-1.1
1,895,634	-				-0.4
1,895,634	-				-2.0
1,895,634	-				+2.7
1,895,634	-				+0.2
1,895,634	-				-0.5
1,895,634	-				-0.4
1,895,634	-				+0.4
1,895,682	+				+0.3
1,895,682	+				-1.7
1,895,769	-				-2.2
1,895,838	+				-2.3
1,895,838	+				+1.1
1,895,839	-				-0.0
1,895,871	+				-1.1
1,895,871	+				+3.7
1,895,872	-				+0.9
1,895,872	-				-1.5
1,895,876	+				-1.1
1,895,879	+				+0.3
1,895,879	+				-1.5
1,895,901	-				-1.5
1,895,903	+				-2.8
1,895,903	+				-1.8
1,895,903	+				+0.4
1,895,907	+				-1.7
1,895,907	+				-0.5
1,895,908	-				-3.2
1,895,908	-				+0.7
1,895,908	-				-0.8
1,895,914	+				-1.1
1,895,950	+				-0.5
1,895,951	-				-2.3
1,895,951	-				+1.4
1,895,951	-				+0.6
1,895,951	-				+0.5
1,895,970	+				-0.9
1,895,976	+				+1.6
1,895,976	+				-0.8
1,895,977	-				-1.7
1,896,041	-				-0.0
1,896,078	+				+0.5
1,896,081	-				-1.5
1,896,178	-				-0.5
1,896,178	-				-2.8
1,896,254	+		DDA3937_RS08375	0.11	-1.3
1,896,442	+		DDA3937_RS08375	0.24	-2.6
1,896,467	-		DDA3937_RS08375	0.26	+0.7