Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08290

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,873,967	+		DDA3937_RS08285	0.60	-0.7
1,873,967	+		DDA3937_RS08285	0.60	-2.9
1,873,967	+		DDA3937_RS08285	0.60	-0.9
1,873,968	-		DDA3937_RS08285	0.60	-2.1
1,873,968	-		DDA3937_RS08285	0.60	-0.4
1,873,968	-		DDA3937_RS08285	0.60	-0.4
1,873,968	-		DDA3937_RS08285	0.60	-0.3
1,873,968	-		DDA3937_RS08285	0.60	-1.5
1,873,968	-		DDA3937_RS08285	0.60	-1.0
1,874,037	+		DDA3937_RS08285	0.65	-1.5
1,874,038	-		DDA3937_RS08285	0.65	+1.5
1,874,038	-		DDA3937_RS08285	0.65	-1.1
1,874,083	+				-0.1
1,874,083	+		DDA3937_RS08285	0.69	+2.1
1,874,084	-		DDA3937_RS08285	0.69	-0.9
1,874,102	+				-0.5
1,874,426	+				-1.1
1,874,426	+				+2.9
1,874,426	+				-0.9
1,874,492	+				-1.3
1,874,492	+				+1.7
1,874,579	+				-3.3
1,874,579	+				-1.7
1,874,625	-				-0.9
1,874,641	+				-3.4
1,874,683	+				-2.8
1,874,683	+				+2.2
1,874,683	+				-1.5
1,874,683	+				-0.5
1,874,684	-				+1.6
1,874,684	-				-1.5
1,874,684	-				-1.9
1,874,684	-				-0.0
1,874,685	+				+0.8
1,874,685	+				+1.5
1,874,685	+				-0.1
1,874,685	+				+1.4
1,874,685	+				+2.6
1,874,685	+				-1.0
1,874,686	-				+0.5
1,874,686	-				+0.5
1,874,686	-				-0.5
1,874,686	-				-0.9
1,874,686	-				+2.6
1,874,686	-				+0.6
1,874,686	-				+0.1
1,874,686	-				-0.0
1,874,686	-				+0.4
1,874,686	-				-1.4
1,874,689	+				-1.1
1,874,689	+				+0.5
1,874,689	+				+1.1
1,874,690	-				-0.9
1,874,732	-				-2.6
1,874,732	-				-1.5
1,874,781	+				-0.0
1,874,795	-				+2.3
1,874,797	+				+1.1
1,874,797	+				+1.9
1,874,798	-				-1.7
1,874,798	-				-2.5
1,874,798	-				-1.4
1,874,798	-				-1.4
1,874,798	-				+0.0
1,874,798	-				+0.5
1,874,798	-				-1.1
1,874,798	-				-3.2
1,874,811	+				+0.0
1,874,811	+				-2.3
1,874,812	-				-2.1
1,874,812	-				-0.1
1,874,812	-				-0.8
1,874,814	-				-0.9
1,874,827	+		DDA3937_RS08290	0.11	-1.7
1,874,828	-		DDA3937_RS08290	0.11	+1.2
1,874,828	-				+2.2
1,874,867	+		DDA3937_RS08290	0.21	-2.3
1,874,867	+		DDA3937_RS08290	0.21	+0.8
1,874,868	-		DDA3937_RS08290	0.21	-2.3
1,874,868	-		DDA3937_RS08290	0.21	-0.8
1,875,149	+				+0.5
1,875,149	+				-1.7
1,875,150	-				+1.5
1,875,150	-				+0.5
1,875,150	-				-0.5
1,875,156	+				-0.1
1,875,156	+				+1.1
1,875,156	+				-3.3
1,875,157	-				-0.3
1,875,157	-				-2.7
1,875,213	-				-0.5
1,875,213	-				-0.5
1,875,213	-				+0.5
1,875,213	-				+0.9
1,875,213	-				-0.0
1,875,243	+				-0.1
1,875,260	+				-1.0
1,875,294	+				-1.9
1,875,294	+				-0.5
1,875,294	+				+0.8
1,875,295	-				-0.1
1,875,295	-				-0.5
1,875,295	-				-1.9
1,875,429	+				+2.1
1,875,430	-				+0.1
1,875,430	-				-0.7
1,875,472	+		DDA3937_RS08295	0.10	-1.1
1,875,472	+		DDA3937_RS08295	0.10	+1.7
1,875,472	+		DDA3937_RS08295	0.10	-1.7
1,875,472	+		DDA3937_RS08295	0.10	-0.9
1,875,473	-		DDA3937_RS08295	0.10	-1.4
1,875,473	-		DDA3937_RS08295	0.10	+0.8
1,875,473	-		DDA3937_RS08295	0.10	+1.1
1,875,481	-		DDA3937_RS08295	0.11	-0.8
1,875,607	+		DDA3937_RS08295	0.25	-2.7
1,875,607	+		DDA3937_RS08295	0.25	-3.0
1,875,607	+		DDA3937_RS08295	0.25	-0.7
1,875,607	+		DDA3937_RS08295	0.25	+0.3
1,875,607	+		DDA3937_RS08295	0.25	-2.0
1,875,608	-		DDA3937_RS08295	0.25	-2.5
1,875,608	-		DDA3937_RS08295	0.25	-2.5
1,875,608	-		DDA3937_RS08295	0.25	+0.9
1,875,608	-		DDA3937_RS08295	0.25	+0.3
1,875,608	-		DDA3937_RS08295	0.25	-0.9
1,875,608	-		DDA3937_RS08295	0.25	+0.2
1,875,672	+		DDA3937_RS08295	0.32	-2.8
1,875,672	+		DDA3937_RS08295	0.32	+1.9
1,875,672	+		DDA3937_RS08295	0.32	+0.1
1,875,672	+		DDA3937_RS08295	0.32	-1.3
1,875,673	-		DDA3937_RS08295	0.32	-1.4
1,875,673	-		DDA3937_RS08295	0.32	+0.5
1,875,673	-		DDA3937_RS08295	0.32	+0.1
1,875,676	-		DDA3937_RS08295	0.32	-1.3
1,875,730	-		DDA3937_RS08295	0.38	-0.5
1,875,742	+		DDA3937_RS08295	0.40	-3.0
1,875,817	+		DDA3937_RS08295	0.48	-2.1
1,875,818	-		DDA3937_RS08295	0.48	-0.5
1,875,818	-		DDA3937_RS08295	0.48	+2.1
1,875,818	-		DDA3937_RS08295	0.48	-0.1
1,875,818	-		DDA3937_RS08295	0.48	-2.0
1,875,827	+		DDA3937_RS08295	0.49	-0.5
1,875,940	+		DDA3937_RS08295	0.61	+2.0
1,875,962	-		DDA3937_RS08295	0.64	-1.5
1,875,962	-		DDA3937_RS08295	0.64	+0.6
1,875,962	-		DDA3937_RS08295	0.64	-0.3
1,876,022	+		DDA3937_RS08295	0.70	+0.6
1,876,023	-		DDA3937_RS08295	0.70	+2.3
1,876,023	-		DDA3937_RS08295	0.70	-1.3
1,876,023	-		DDA3937_RS08295	0.70	-0.2
1,876,024	+		DDA3937_RS08295	0.70	+0.3
1,876,024	+		DDA3937_RS08295	0.70	-0.9
1,876,024	+		DDA3937_RS08295	0.70	+0.7
1,876,024	+		DDA3937_RS08295	0.70	-0.5
1,876,024	+		DDA3937_RS08295	0.70	-2.6
1,876,024	+		DDA3937_RS08295	0.70	-0.9
1,876,024	+		DDA3937_RS08295	0.70	-0.9
1,876,025	-		DDA3937_RS08295	0.70	-1.7
1,876,025	-		DDA3937_RS08295	0.70	+0.8
1,876,025	-		DDA3937_RS08295	0.70	-0.7
1,876,025	-		DDA3937_RS08295	0.70	-3.3
1,876,025	-		DDA3937_RS08295	0.70	+1.5
1,876,030	+		DDA3937_RS08295	0.71	-0.5
1,876,030	+		DDA3937_RS08295	0.71	+1.0
1,876,030	+		DDA3937_RS08295	0.71	-1.1
1,876,031	-		DDA3937_RS08295	0.71	+0.4
1,876,084	-		DDA3937_RS08295	0.77	+0.5
1,876,115	+		DDA3937_RS08295	0.80	-3.4
1,876,116	-		DDA3937_RS08295	0.80	+1.4
1,876,116	-		DDA3937_RS08295	0.80	-0.0
1,876,130	+		DDA3937_RS08295	0.82	+1.1
1,876,130	+		DDA3937_RS08295	0.82	-2.4
1,876,130	+		DDA3937_RS08295	0.82	+0.2
1,876,131	-		DDA3937_RS08295	0.82	-0.7
1,876,131	-		DDA3937_RS08295	0.82	-1.4
1,876,131	-		DDA3937_RS08295	0.82	+0.0