Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08230

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,861,300	+		DDA3937_RS08225	0.28	-1.2
1,861,346	+		DDA3937_RS08225	0.34	-2.6
1,861,346	+		DDA3937_RS08225	0.34	-1.7
1,861,346	+		DDA3937_RS08225	0.34	-1.7
1,861,347	-		DDA3937_RS08225	0.35	-0.9
1,861,389	+		DDA3937_RS08225	0.40	-1.4
1,861,389	+		DDA3937_RS08225	0.40	-0.9
1,861,389	+		DDA3937_RS08225	0.40	+2.4
1,861,390	-		DDA3937_RS08225	0.40	+1.4
1,861,390	-		DDA3937_RS08225	0.40	+0.1
1,861,478	+		DDA3937_RS08225	0.52	+0.5
1,861,478	+		DDA3937_RS08225	0.52	-2.1
1,861,525	+		DDA3937_RS08225	0.58	-2.2
1,861,525	+		DDA3937_RS08225	0.58	-1.4
1,861,639	+		DDA3937_RS08225	0.73	-1.9
1,861,750	+		DDA3937_RS08225	0.87	+1.7
1,861,757	-		DDA3937_RS08225	0.88	+1.5
1,861,847	+				+1.6
1,861,848	-				-0.1
1,861,926	-				-0.9
1,861,926	-				-1.1
1,861,999	+				-0.3
1,861,999	+				-1.1
1,862,005	+				-0.5
1,862,062	+				+1.1
1,862,062	+				+0.2
1,862,075	+				+0.7
1,862,075	+				+1.2
1,862,076	-				+0.1
1,862,076	-				-1.3
1,862,076	-				+0.5
1,862,213	-				-0.0
1,862,226	-				+0.8
1,862,227	+				+0.2
1,862,227	+				+1.0
1,862,227	+				-0.5
1,862,228	-				-0.4
1,862,228	-				-0.5
1,862,228	-				-1.8
1,862,237	+				+0.8
1,862,237	+				-1.1
1,862,238	-				+3.3
1,862,238	-				+0.3
1,862,242	+				-1.0
1,862,283	+		DDA3937_RS08230	0.12	+0.5
1,862,283	+		DDA3937_RS08230	0.12	+1.9
1,862,283	+		DDA3937_RS08230	0.12	+1.7
1,862,283	+		DDA3937_RS08230	0.12	-0.1
1,862,284	-		DDA3937_RS08230	0.12	-0.4
1,862,316	+		DDA3937_RS08230	0.14	-1.7
1,862,317	-		DDA3937_RS08230	0.15	-0.9
1,862,390	+		DDA3937_RS08230	0.21	+1.8
1,862,390	+				-0.1
1,862,390	+		DDA3937_RS08230	0.21	-1.0
1,862,390	+		DDA3937_RS08230	0.21	-0.9
1,862,391	-		DDA3937_RS08230	0.21	-1.1
1,862,430	+		DDA3937_RS08230	0.24	-1.8
1,862,558	+		DDA3937_RS08230	0.35	-1.7
1,862,558	+		DDA3937_RS08230	0.35	-2.5
1,862,558	+		DDA3937_RS08230	0.35	-0.9
1,862,559	-		DDA3937_RS08230	0.35	+2.3
1,862,559	-		DDA3937_RS08230	0.35	+2.8
1,862,573	+		DDA3937_RS08230	0.36	+2.3
1,862,573	+		DDA3937_RS08230	0.36	-0.4
1,862,623	+		DDA3937_RS08230	0.40	+2.2
1,862,624	-		DDA3937_RS08230	0.40	+2.1
1,862,662	+		DDA3937_RS08230	0.43	+0.3
1,862,662	+		DDA3937_RS08230	0.43	+1.7
1,862,662	+		DDA3937_RS08230	0.43	+1.7
1,862,662	+		DDA3937_RS08230	0.43	+1.0
1,862,662	+		DDA3937_RS08230	0.43	-0.0
1,862,663	-		DDA3937_RS08230	0.43	+0.7
1,862,663	-		DDA3937_RS08230	0.43	-2.9
1,862,697	+		DDA3937_RS08230	0.46	+0.4
1,862,710	+		DDA3937_RS08230	0.47	-0.1
1,862,725	+		DDA3937_RS08230	0.48	+1.6
1,862,725	+		DDA3937_RS08230	0.48	-1.1
1,862,725	+		DDA3937_RS08230	0.48	-1.5
1,862,725	+		DDA3937_RS08230	0.48	+0.3
1,862,725	+				+0.5
1,862,725	+		DDA3937_RS08230	0.48	-1.7
1,862,726	-		DDA3937_RS08230	0.49	+2.1
1,862,726	-		DDA3937_RS08230	0.49	-1.0
1,862,726	-		DDA3937_RS08230	0.49	-0.2
1,862,726	-		DDA3937_RS08230	0.49	-2.4
1,862,726	-		DDA3937_RS08230	0.49	+4.4
1,862,726	-		DDA3937_RS08230	0.49	-3.6
1,862,726	-		DDA3937_RS08230	0.49	+2.3
1,862,726	-		DDA3937_RS08230	0.49	+0.7
1,862,726	-		DDA3937_RS08230	0.49	+1.6
1,862,726	-		DDA3937_RS08230	0.49	-1.0
1,862,726	-		DDA3937_RS08230	0.49	-0.3
1,862,729	+		DDA3937_RS08230	0.49	+0.5
1,862,729	+		DDA3937_RS08230	0.49	-0.4
1,862,729	+		DDA3937_RS08230	0.49	-3.0
1,862,781	-		DDA3937_RS08230	0.53	-0.5
1,862,788	-		DDA3937_RS08230	0.54	+1.5
1,862,823	-		DDA3937_RS08230	0.57	+0.5
1,862,830	+		DDA3937_RS08230	0.57	-1.7
1,862,830	+		DDA3937_RS08230	0.57	+1.6
1,862,830	+		DDA3937_RS08230	0.57	-0.3
1,862,830	+		DDA3937_RS08230	0.57	+0.3
1,862,831	-		DDA3937_RS08230	0.57	+0.3
1,862,831	-		DDA3937_RS08230	0.57	+0.8
1,862,831	-		DDA3937_RS08230	0.57	-0.2
1,862,934	-		DDA3937_RS08230	0.66	-1.1
1,862,949	+		DDA3937_RS08230	0.67	-0.5
1,862,949	+		DDA3937_RS08230	0.67	-1.5
1,862,949	+		DDA3937_RS08230	0.67	-1.4
1,862,950	-		DDA3937_RS08230	0.67	+0.4
1,862,963	-		DDA3937_RS08230	0.68	-3.0
1,862,963	-		DDA3937_RS08230	0.68	+0.8
1,862,963	-		DDA3937_RS08230	0.68	-0.7
1,862,966	+		DDA3937_RS08230	0.68	-3.5
1,862,966	+		DDA3937_RS08230	0.68	+0.3
1,862,966	+		DDA3937_RS08230	0.68	+1.5
1,862,967	-		DDA3937_RS08230	0.69	-1.8
1,862,967	-		DDA3937_RS08230	0.69	-0.4
1,862,967	-		DDA3937_RS08230	0.69	+0.7
1,862,967	-		DDA3937_RS08230	0.69	+0.3
1,863,312	+				+0.9
1,863,312	+				-0.7
1,863,312	+				-0.9
1,863,313	-				-0.3
1,863,320	+				+0.6
1,863,443	+				+1.2
1,863,443	+				-2.4
1,863,443	+				-0.5
1,863,444	-				-0.5
1,863,444	-				-0.9
1,863,451	+				+0.0
1,863,451	+				+1.3
1,863,452	-				-1.4
1,863,464	+				-0.2
1,863,465	-				-0.9
1,863,465	-				-1.5
1,863,465	-				+1.5
1,863,467	+				-1.1
1,863,467	+				-0.5
1,863,467	+				+1.6
1,863,468	-				-1.5
1,863,468	-				-0.1
1,863,468	-				-1.7
1,863,468	-				-1.5
1,863,468	-				+3.3
1,863,468	-				-0.1
1,863,468	-				-2.6
1,863,580	+				+2.0
1,863,580	+				-2.1
1,863,581	-				-1.1
1,863,598	+				+0.7
1,863,599	-				-0.1
1,863,605	+				-0.8
1,863,605	+				-0.4
1,863,605	+				+1.7
1,863,605	+				-2.5
1,863,605	+				+1.8
1,863,605	+				+0.0
1,863,605	+				+0.0
1,863,606	-				-1.0
1,863,606	-				+1.0
1,863,606	-				-0.9
1,863,609	+				-0.4
1,863,635	+				-0.2
1,863,635	+				+0.6
1,863,635	+				+1.2
1,863,635	+				+1.3
1,863,636	-				-1.5
1,863,645	-				-3.1
1,863,655	+				-3.1
1,863,655	+				-2.4
1,863,656	-				-1.5
1,863,656	-				-1.2
1,863,656	-				-1.9
1,863,656	-				-2.6
1,863,656	-				-1.5
1,863,696	+				-0.4
1,863,696	+				-1.4
1,863,697	-				-2.2
1,863,697	-				+0.5
1,863,871	+		DDA3937_RS08235	0.20	-1.1
1,863,872	-		DDA3937_RS08235	0.20	-3.5
1,863,881	+		DDA3937_RS08235	0.21	-1.1
1,863,881	+		DDA3937_RS08235	0.21	+1.3
1,863,881	+		DDA3937_RS08235	0.21	-0.6
1,863,882	-		DDA3937_RS08235	0.21	-1.4
1,863,882	-		DDA3937_RS08235	0.21	+0.4
1,863,882	-		DDA3937_RS08235	0.21	-1.7
1,863,882	-		DDA3937_RS08235	0.21	-0.3
1,863,882	-		DDA3937_RS08235	0.21	-2.0
1,863,882	-		DDA3937_RS08235	0.21	+0.9
1,863,883	+		DDA3937_RS08235	0.21	-2.5
1,863,884	-		DDA3937_RS08235	0.21	-0.9
1,863,884	-		DDA3937_RS08235	0.21	-1.5
1,864,058	+		DDA3937_RS08235	0.40	-0.8
1,864,058	+		DDA3937_RS08235	0.40	-1.5
1,864,059	-		DDA3937_RS08235	0.40	+0.2
1,864,087	-		DDA3937_RS08235	0.43	+1.6
1,864,099	+		DDA3937_RS08235	0.44	-0.1
1,864,099	+		DDA3937_RS08235	0.44	+0.6
1,864,131	-		DDA3937_RS08235	0.48	+1.1
1,864,162	+		DDA3937_RS08235	0.51	+2.0
1,864,162	+		DDA3937_RS08235	0.51	-0.7
1,864,170	+		DDA3937_RS08235	0.52	-2.6
1,864,170	+		DDA3937_RS08235	0.52	-2.6
1,864,230	+		DDA3937_RS08235	0.59	-0.6
1,864,230	+		DDA3937_RS08235	0.59	+0.1
1,864,231	-		DDA3937_RS08235	0.59	+0.5
1,864,231	-		DDA3937_RS08235	0.59	+0.5
1,864,254	-		DDA3937_RS08235	0.61	-1.0
1,864,277	+		DDA3937_RS08235	0.64	-1.5
1,864,291	+				-0.1
1,864,291	+		DDA3937_RS08235	0.65	-0.4
1,864,291	+		DDA3937_RS08235	0.65	-0.5
1,864,291	+		DDA3937_RS08235	0.65	-0.5
1,864,291	+		DDA3937_RS08235	0.65	+2.2
1,864,292	-				+3.3
1,864,292	-		DDA3937_RS08235	0.65	-2.5
1,864,292	-		DDA3937_RS08235	0.65	-0.3
1,864,292	-		DDA3937_RS08235	0.65	-0.1
1,864,292	-		DDA3937_RS08235	0.65	-1.1
1,864,292	-		DDA3937_RS08235	0.65	+1.0
1,864,292	-		DDA3937_RS08235	0.65	+0.3
1,864,292	-				-0.9
1,864,292	-		DDA3937_RS08235	0.65	+2.6