Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07555

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,704,817	+				-1.0
1,704,855	-				-1.4
1,704,864	+				+2.0
1,704,867	+				-1.7
1,704,887	+				+0.6
1,704,887	+				-1.6
1,704,900	+				+0.2
1,704,900	+				+1.1
1,704,900	+				-0.4
1,704,901	-				+1.0
1,704,994	+				+0.4
1,704,994	+				+2.2
1,704,994	+				-0.2
1,704,994	+				-0.9
1,705,110	+		DDA3937_RS07550	0.28	+0.1
1,705,111	-		DDA3937_RS07550	0.28	-0.9
1,705,111	-		DDA3937_RS07550	0.28	+0.8
1,705,111	-		DDA3937_RS07550	0.28	-0.3
1,705,113	+		DDA3937_RS07550	0.28	-3.3
1,705,113	+		DDA3937_RS07550	0.28	+0.1
1,705,114	-		DDA3937_RS07550	0.29	-2.6
1,705,253	+		DDA3937_RS07550	0.51	-0.4
1,705,253	+		DDA3937_RS07550	0.51	-1.2
1,705,253	+		DDA3937_RS07550	0.51	-1.3
1,705,253	+		DDA3937_RS07550	0.51	-0.8
1,705,253	+		DDA3937_RS07550	0.51	-1.5
1,705,253	+		DDA3937_RS07550	0.51	-0.7
1,705,253	+		DDA3937_RS07550	0.51	+1.7
1,705,253	+		DDA3937_RS07550	0.51	-1.7
1,705,254	-		DDA3937_RS07550	0.51	+2.4
1,705,254	-		DDA3937_RS07550	0.51	-1.4
1,705,254	-		DDA3937_RS07550	0.51	-1.0
1,705,254	-		DDA3937_RS07550	0.51	-2.0
1,705,254	-		DDA3937_RS07550	0.51	-0.2
1,705,254	-		DDA3937_RS07550	0.51	+0.1
1,705,254	-				-0.9
1,705,316	+		DDA3937_RS07550	0.61	-0.4
1,705,316	+		DDA3937_RS07550	0.61	+2.1
1,705,316	+		DDA3937_RS07550	0.61	-1.7
1,705,316	+		DDA3937_RS07550	0.61	+2.2
1,705,316	+		DDA3937_RS07550	0.61	+1.6
1,705,316	+		DDA3937_RS07550	0.61	-1.2
1,705,317	-		DDA3937_RS07550	0.61	-2.7
1,705,317	-		DDA3937_RS07550	0.61	-1.2
1,705,317	-		DDA3937_RS07550	0.61	-3.0
1,705,363	+		DDA3937_RS07550	0.68	+0.0
1,705,363	+		DDA3937_RS07550	0.68	+1.1
1,705,383	+		DDA3937_RS07550	0.71	+1.7
1,705,384	-				-0.9
1,705,386	+		DDA3937_RS07550	0.72	-2.2
1,705,386	+		DDA3937_RS07550	0.72	-0.7
1,705,387	-		DDA3937_RS07550	0.72	-0.1
1,705,410	+		DDA3937_RS07550	0.76	-2.0
1,705,411	-		DDA3937_RS07550	0.76	-1.0
1,705,411	-		DDA3937_RS07550	0.76	+0.6
1,705,546	+				+0.4
1,705,547	-				-1.3
1,705,563	+				-0.3
1,705,564	-				-0.5
1,705,652	-				+1.0
1,705,652	-				+1.2
1,705,671	+				-2.0
1,705,671	+				+1.2
1,705,671	+				-1.2
1,705,686	+				+0.6
1,705,686	+				-0.2
1,705,686	+				-1.2
1,705,689	+				+0.1
1,705,689	+				-1.3
1,705,689	+				-1.2
1,705,690	-				-0.9
1,705,690	-				-2.3
1,705,690	-				-1.3
1,705,690	-				-0.6
1,705,690	-				-0.9
1,705,736	+				+0.3
1,705,736	+				+0.4
1,705,737	-				-2.5
1,705,872	-				-2.6
1,705,872	-				-3.7
1,705,975	+		DDA3937_RS07555	0.15	-1.6
1,706,296	+		DDA3937_RS07555	0.37	+1.4
1,706,296	+		DDA3937_RS07555	0.37	-0.6
1,706,296	+		DDA3937_RS07555	0.37	-0.1
1,706,297	-		DDA3937_RS07555	0.37	+0.4
1,706,297	-		DDA3937_RS07555	0.37	-1.9
1,706,297	-		DDA3937_RS07555	0.37	+1.1
1,706,297	-		DDA3937_RS07555	0.37	-0.6
1,706,372	-		DDA3937_RS07555	0.42	+1.8
1,706,372	-		DDA3937_RS07555	0.42	+2.0
1,706,484	-		DDA3937_RS07555	0.49	-1.4
1,706,530	+		DDA3937_RS07555	0.52	+3.4
1,706,556	+		DDA3937_RS07555	0.54	-1.6
1,706,662	+		DDA3937_RS07555	0.61	-0.1
1,706,662	+		DDA3937_RS07555	0.61	+1.8
1,706,680	+		DDA3937_RS07555	0.63	+1.6
1,706,734	+		DDA3937_RS07555	0.66	-0.1
1,706,734	+		DDA3937_RS07555	0.66	-1.6
1,706,735	-		DDA3937_RS07555	0.66	-1.9
1,706,782	+				-0.6
1,706,782	+		DDA3937_RS07555	0.69	+0.4
1,706,782	+		DDA3937_RS07555	0.69	-1.4
1,706,783	-		DDA3937_RS07555	0.70	+0.9
1,706,783	-		DDA3937_RS07555	0.70	-0.6
1,706,784	+		DDA3937_RS07555	0.70	-0.1
1,706,784	+		DDA3937_RS07555	0.70	+0.4
1,706,784	+		DDA3937_RS07555	0.70	-3.1
1,706,784	+		DDA3937_RS07555	0.70	-2.3
1,706,784	+		DDA3937_RS07555	0.70	-1.4
1,706,784	+		DDA3937_RS07555	0.70	+1.8
1,706,784	+				+1.4
1,706,784	+		DDA3937_RS07555	0.70	-0.7
1,706,784	+		DDA3937_RS07555	0.70	-1.3
1,706,785	-				-0.1
1,706,785	-		DDA3937_RS07555	0.70	-3.1
1,706,785	-		DDA3937_RS07555	0.70	+0.6
1,706,785	-		DDA3937_RS07555	0.70	-0.6
1,706,785	-		DDA3937_RS07555	0.70	-2.5
1,706,785	-		DDA3937_RS07555	0.70	+0.9
1,706,785	-		DDA3937_RS07555	0.70	-2.6
1,706,881	+		DDA3937_RS07555	0.76	-0.4
1,706,881	+				+0.4
1,706,882	-		DDA3937_RS07555	0.76	-1.5
1,706,882	-		DDA3937_RS07555	0.76	-1.7
1,706,882	-		DDA3937_RS07555	0.76	-1.4
1,706,882	-		DDA3937_RS07555	0.76	+1.5
1,706,882	-		DDA3937_RS07555	0.76	-0.9
1,706,882	-		DDA3937_RS07555	0.76	-2.5
1,706,883	+		DDA3937_RS07555	0.76	-0.1
1,706,883	+		DDA3937_RS07555	0.76	+1.0
1,706,883	+		DDA3937_RS07555	0.76	-0.8
1,706,883	+		DDA3937_RS07555	0.76	-2.1
1,706,884	-		DDA3937_RS07555	0.76	+1.4
1,706,884	-		DDA3937_RS07555	0.76	-1.1
1,706,884	-		DDA3937_RS07555	0.76	-0.9
1,706,884	-		DDA3937_RS07555	0.76	-0.7
1,706,884	-		DDA3937_RS07555	0.76	-1.2
1,706,884	-		DDA3937_RS07555	0.76	-0.9
1,706,896	+		DDA3937_RS07555	0.77	-1.0
1,706,897	-		DDA3937_RS07555	0.77	-2.1
1,706,910	+		DDA3937_RS07555	0.78	-0.8
1,706,910	+		DDA3937_RS07555	0.78	-0.9
1,706,932	+		DDA3937_RS07555	0.80	+0.8
1,706,988	-		DDA3937_RS07555	0.83	-0.9
1,707,112	+				+0.8
1,707,112	+				+0.6
1,707,113	-				+1.5
1,707,206	+				+1.2
1,707,220	-				+2.1
1,707,293	-				+1.0
1,707,293	-				-2.2
1,707,293	-				-2.1
1,707,293	-				-0.9
1,707,293	-				-1.7
1,707,293	-				+1.9
1,707,295	+				+2.5
1,707,295	+				-0.9
1,707,295	+				+2.1
1,707,295	+				+0.9
1,707,295	+				+1.5
1,707,296	-				-2.0
1,707,296	-				-1.1
1,707,296	-				-0.6
1,707,296	-				-1.4
1,707,297	+				-2.8
1,707,297	+				-0.9
1,707,297	+				-1.4
1,707,297	+				+0.4
1,707,297	+				+2.4
1,707,297	+				+2.0
1,707,297	+				+0.2
1,707,297	+				-0.0
1,707,297	+				-2.7
1,707,297	+				-2.4
1,707,297	+				-1.7
1,707,298	-				+0.4
1,707,298	-				+1.4
1,707,298	-				-1.5
1,707,298	-				-2.4
1,707,298	-				+0.5
1,707,298	-				+0.0
1,707,298	-				-0.6
1,707,298	-				-0.8
1,707,298	-				-0.2
1,707,298	-				-0.6
1,707,298	-				-2.1
1,707,298	-				+1.7
1,707,298	-				+2.8
1,707,298	-				-1.6
1,707,298	-				-2.4
1,707,298	-				-2.1
1,707,358	+				+0.1
1,707,423	-				+0.8
1,707,438	+				+1.4
1,707,439	-				-0.6
1,707,449	+				+0.9
1,707,449	+				+0.7
1,707,449	+				+0.9
1,707,450	-				+2.0
1,707,450	-				+1.0
1,707,450	-				-0.1
1,707,450	-				-0.4
1,707,450	-				-2.0
1,707,450	-				-1.1
1,707,450	-				-1.6
1,707,452	-				-1.2
1,707,458	-				-1.7
1,707,458	-				+2.2
1,707,463	+				-0.1
1,707,463	+				+1.1
1,707,463	+				+1.4
1,707,463	+				-1.1
1,707,463	+				-2.1
1,707,463	+				-0.7
1,707,463	+				+0.4
1,707,464	-				+0.0
1,707,464	-				-1.1
1,707,464	-				-1.5
1,707,464	-				-2.1
1,707,464	-				-2.0
1,707,464	-				-2.0
1,707,464	-				-0.7
1,707,464	-				-1.2
1,707,464	-				-1.9
1,707,464	-				+0.2
1,707,469	+				+2.4
1,707,469	+				+0.4
1,707,469	+				-0.6
1,707,469	+				+1.7
1,707,469	+				-3.2
1,707,469	+				-0.9
1,707,471	+				+0.9
1,707,471	+				+0.9
1,707,471	+				+1.4
1,707,471	+				+0.1
1,707,471	+				-0.3
1,707,471	+				-0.1
1,707,471	+				+0.3
1,707,471	+				-1.4
1,707,471	+				+0.9
1,707,471	+				+0.0
1,707,471	+				+0.4
1,707,471	+				-1.2
1,707,471	+				-3.6
1,707,471	+				+0.3
1,707,471	+				-1.7
1,707,472	-				+0.4
1,707,472	-				-1.6
1,707,472	-				+1.2
1,707,472	-				-2.4
1,707,472	-				-1.6
1,707,472	-				-0.9
1,707,472	-				+1.1
1,707,472	-				-0.1
1,707,472	-				-1.7
1,707,472	-				+2.8
1,707,472	-				+1.4
1,707,472	-				-0.1
1,707,472	-				-2.6
1,707,472	-				+0.4
1,707,472	-				-3.6
1,707,472	-				-0.0
1,707,472	-				-1.9
1,707,472	-				-2.6
1,707,472	-				+0.3
1,707,472	-				-2.0
1,707,472	-				-0.1
1,707,472	-				-2.5
1,707,472	-				+2.0
1,707,472	-				-1.4
1,707,472	-				-2.9
1,707,497	-				+1.0
1,707,508	+				-0.0
1,707,508	+				-1.4
1,707,508	+				-0.5
1,707,508	+				+1.9
1,707,508	+				+1.4
1,707,508	+				+0.6
1,707,508	+				-1.1
1,707,508	+				+0.4
1,707,508	+				-0.6
1,707,508	+				-0.5
1,707,508	+				-1.4
1,707,509	-				-0.5
1,707,509	-				+2.9
1,707,509	-				-0.6
1,707,509	-				-1.6
1,707,509	-				-1.7
1,707,509	-				-1.9
1,707,509	-				+1.9
1,707,510	+				-2.3
1,707,510	+				+0.3
1,707,510	+				+0.4
1,707,510	+				-1.3
1,707,510	+				+0.5
1,707,510	+				+0.8
1,707,511	-				-3.8
1,707,511	-				-1.9
1,707,511	-				-2.3
1,707,511	-				-0.9
1,707,511	-				-1.7
1,707,563	+				+0.8
1,707,563	+				+2.0
1,707,570	+				-2.3
1,707,571	-				-2.6
1,707,572	+				+0.3
1,707,572	+				+1.3
1,707,572	+				-0.6
1,707,572	+				-0.8
1,707,572	+				+1.4
1,707,572	+				-0.9
1,707,573	-				-1.9
1,707,573	-				+1.7
1,707,573	-				-0.6
1,707,785	+		DDA3937_RS07560	0.20	-0.9
1,707,885	-		DDA3937_RS07560	0.27	-1.6
1,707,898	+		DDA3937_RS07560	0.28	+1.7
1,707,898	+				+0.4
1,707,898	+		DDA3937_RS07560	0.28	-0.3
1,707,899	-		DDA3937_RS07560	0.28	-0.8
1,707,899	-		DDA3937_RS07560	0.28	-0.0
1,708,102	+		DDA3937_RS07560	0.42	+1.0
1,708,201	+		DDA3937_RS07560	0.49	+0.4
1,708,202	-		DDA3937_RS07560	0.49	-2.1