Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07495

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,691,635	+		DDA3937_RS07490	0.48	-1.4
1,691,645	+		DDA3937_RS07490	0.49	-2.0
1,691,646	-		DDA3937_RS07490	0.49	+1.3
1,691,715	+		DDA3937_RS07490	0.54	-1.4
1,691,715	+		DDA3937_RS07490	0.54	+0.5
1,691,715	+		DDA3937_RS07490	0.54	-1.9
1,691,716	-		DDA3937_RS07490	0.54	+0.2
1,691,716	-		DDA3937_RS07490	0.54	-0.4
1,691,716	-		DDA3937_RS07490	0.54	+0.0
1,691,716	-		DDA3937_RS07490	0.54	+1.6
1,691,861	+		DDA3937_RS07490	0.65	+0.8
1,691,861	+		DDA3937_RS07490	0.65	-2.7
1,691,862	-		DDA3937_RS07490	0.65	+0.9
1,691,862	-		DDA3937_RS07490	0.65	+0.4
1,691,883	+		DDA3937_RS07490	0.67	+1.4
1,691,883	+		DDA3937_RS07490	0.67	+1.2
1,691,958	+		DDA3937_RS07490	0.72	+0.2
1,691,958	+		DDA3937_RS07490	0.72	-0.6
1,691,958	+		DDA3937_RS07490	0.72	+1.0
1,691,959	-		DDA3937_RS07490	0.73	-0.4
1,691,959	-		DDA3937_RS07490	0.73	+0.1
1,691,994	+		DDA3937_RS07490	0.75	+2.8
1,692,174	-		DDA3937_RS07490	0.89	-2.4
1,692,196	+				-0.9
1,692,196	+				+0.4
1,692,197	-				-1.0
1,692,200	-				-1.8
1,692,200	-				+0.2
1,692,270	+				+0.1
1,692,319	-				-2.5
1,692,319	-				-0.6
1,692,335	-				+1.1
1,692,337	+				-2.1
1,692,337	+				-2.6
1,692,337	+				-2.7
1,692,337	+				-2.8
1,692,337	+				+0.7
1,692,337	+				-1.6
1,692,337	+				+1.7
1,692,337	+				+0.4
1,692,338	-				-1.6
1,692,338	-				-2.2
1,692,338	-				-1.2
1,692,386	-				+0.7
1,692,406	+				+0.6
1,692,406	+				+1.1
1,692,406	+				-0.9
1,692,407	-				+0.5
1,692,407	-				+0.0
1,692,475	+				-0.2
1,692,475	+				-1.8
1,692,475	+				-1.9
1,692,476	-				+0.8
1,692,524	+				-1.2
1,692,525	-				-0.1
1,692,532	+				-0.0
1,692,532	+				+1.3
1,692,533	-				-1.4
1,692,621	+				-2.5
1,692,622	-				+0.4
1,692,708	-		DDA3937_RS07495	0.16	-1.5
1,692,715	-		DDA3937_RS07495	0.17	-1.9
1,692,914	+		DDA3937_RS07495	0.43	+0.4
1,692,914	+		DDA3937_RS07495	0.43	-1.8
1,692,914	+		DDA3937_RS07495	0.43	-1.8
1,692,914	+		DDA3937_RS07495	0.43	-0.5
1,692,914	+		DDA3937_RS07495	0.43	-2.1
1,692,914	+		DDA3937_RS07495	0.43	-1.2
1,692,915	-		DDA3937_RS07495	0.43	-0.8
1,692,915	-		DDA3937_RS07495	0.43	-1.2
1,692,915	-		DDA3937_RS07495	0.43	-0.6
1,692,915	-		DDA3937_RS07495	0.43	-0.9
1,692,915	-		DDA3937_RS07495	0.43	-1.0
1,692,915	-		DDA3937_RS07495	0.43	-3.5
1,692,915	-		DDA3937_RS07495	0.43	-1.2
1,693,069	-		DDA3937_RS07495	0.63	+0.1
1,693,069	-		DDA3937_RS07495	0.63	-0.5
1,693,093	-		DDA3937_RS07495	0.66	-1.3
1,693,093	-		DDA3937_RS07495	0.66	-3.2
1,693,125	+		DDA3937_RS07495	0.70	+0.9
1,693,125	+		DDA3937_RS07495	0.70	+0.3
1,693,125	+		DDA3937_RS07495	0.70	-2.8
1,693,125	+		DDA3937_RS07495	0.70	-1.0
1,693,125	+		DDA3937_RS07495	0.70	-0.2
1,693,126	-		DDA3937_RS07495	0.70	-0.6
1,693,126	-		DDA3937_RS07495	0.70	-1.1
1,693,182	-		DDA3937_RS07495	0.78	-0.8
1,693,189	+		DDA3937_RS07495	0.79	-1.2
1,693,189	+		DDA3937_RS07495	0.79	+0.4
1,693,189	+		DDA3937_RS07495	0.79	+1.4
1,693,189	+		DDA3937_RS07495	0.79	-0.8
1,693,189	+		DDA3937_RS07495	0.79	+2.2
1,693,190	-		DDA3937_RS07495	0.79	-0.9
1,693,190	-		DDA3937_RS07495	0.79	-1.4
1,693,206	-		DDA3937_RS07495	0.81	-1.2
1,693,266	+		DDA3937_RS07495	0.89	-0.2
1,693,267	-		DDA3937_RS07495	0.89	-0.7
1,693,282	-				-2.5
1,693,283	+				-0.9
1,693,283	+				+0.4
1,693,284	-				-2.7
1,693,284	-				-2.3
1,693,284	-				-0.2
1,693,284	-				+0.8
1,693,284	-				+0.0
1,693,401	+				-0.2
1,693,401	+				-0.2
1,693,406	+				-2.6
1,693,406	+				+0.0
1,693,408	+				+1.8
1,693,408	+				+1.1
1,693,408	+				-0.6
1,693,409	-				-0.8
1,693,409	-				-2.8
1,693,409	-				+1.6
1,693,409	-				-0.3
1,693,429	+				-0.4
1,693,429	+				-1.6
1,693,430	-				+2.1
1,693,479	+				-1.8
1,693,480	-				-2.3
1,693,504	-				-1.5
1,693,526	-				-0.9
1,693,536	+				+0.6
1,693,586	+				+3.0
1,693,588	+		DDA3937_RS07500	0.14	-2.6
1,693,588	+		DDA3937_RS07500	0.14	-0.2
1,693,588	+		DDA3937_RS07500	0.14	-1.2
1,693,589	-		DDA3937_RS07500	0.14	-0.4
1,693,589	-		DDA3937_RS07500	0.14	-1.9
1,693,589	-		DDA3937_RS07500	0.14	-2.4
1,693,589	-		DDA3937_RS07500	0.14	-0.2
1,693,604	+		DDA3937_RS07500	0.16	-0.5
1,693,813	+		DDA3937_RS07500	0.37	-1.6
1,693,837	+		DDA3937_RS07500	0.39	-1.3
1,693,838	-		DDA3937_RS07500	0.39	-0.6
1,693,905	-		DDA3937_RS07500	0.46	-2.4
1,693,917	-		DDA3937_RS07500	0.47	-0.2
1,693,925	+		DDA3937_RS07500	0.48	-1.0
1,693,926	-		DDA3937_RS07500	0.48	-0.3
1,693,926	-		DDA3937_RS07500	0.48	+1.2
1,693,939	-		DDA3937_RS07500	0.50	-2.6
1,693,939	-		DDA3937_RS07500	0.50	+0.8
1,693,939	-		DDA3937_RS07500	0.50	-2.3
1,693,939	-		DDA3937_RS07500	0.50	-0.8
1,693,941	+		DDA3937_RS07500	0.50	-0.6
1,693,941	+		DDA3937_RS07500	0.50	-0.4
1,693,982	+		DDA3937_RS07500	0.54	+0.4
1,693,983	-		DDA3937_RS07500	0.54	-0.2
1,693,995	+		DDA3937_RS07500	0.55	-2.7
1,693,995	+		DDA3937_RS07500	0.55	-0.6
1,693,995	+		DDA3937_RS07500	0.55	+0.8
1,693,996	-		DDA3937_RS07500	0.55	+1.4
1,693,996	-		DDA3937_RS07500	0.55	-2.0
1,693,996	-		DDA3937_RS07500	0.55	+1.8
1,693,996	-		DDA3937_RS07500	0.55	+0.1
1,693,996	-		DDA3937_RS07500	0.55	-2.3
1,693,996	-		DDA3937_RS07500	0.55	-0.2
1,693,996	-		DDA3937_RS07500	0.55	-1.6
1,693,998	-		DDA3937_RS07500	0.56	+0.5
1,694,000	-		DDA3937_RS07500	0.56	-2.0
1,694,007	-		DDA3937_RS07500	0.56	-2.0
1,694,049	-		DDA3937_RS07500	0.61	-0.9
1,694,049	-		DDA3937_RS07500	0.61	-2.0
1,694,049	-		DDA3937_RS07500	0.61	-0.2
1,694,056	+		DDA3937_RS07500	0.61	-1.4
1,694,057	-		DDA3937_RS07500	0.62	+2.4
1,694,081	-		DDA3937_RS07500	0.64	+0.4
1,694,089	+		DDA3937_RS07500	0.65	-2.8
1,694,116	+		DDA3937_RS07500	0.67	-2.2
1,694,116	+		DDA3937_RS07500	0.67	+1.5
1,694,116	+		DDA3937_RS07500	0.67	-2.2
1,694,116	+		DDA3937_RS07500	0.67	-0.2
1,694,117	-		DDA3937_RS07500	0.68	+0.8
1,694,186	+		DDA3937_RS07500	0.75	+0.0
1,694,203	+		DDA3937_RS07500	0.76	+2.7
1,694,206	-		DDA3937_RS07500	0.77	-2.0
1,694,214	+		DDA3937_RS07500	0.77	+0.5
1,694,214	+		DDA3937_RS07500	0.77	-1.2
1,694,214	+		DDA3937_RS07500	0.77	-2.0
1,694,214	+		DDA3937_RS07500	0.77	-2.0
1,694,214	+		DDA3937_RS07500	0.77	+0.9
1,694,214	+		DDA3937_RS07500	0.77	-0.9
1,694,214	+		DDA3937_RS07500	0.77	+0.4
1,694,214	+		DDA3937_RS07500	0.77	+1.4
1,694,214	+		DDA3937_RS07500	0.77	-2.0
1,694,215	-		DDA3937_RS07500	0.77	-2.6
1,694,215	-		DDA3937_RS07500	0.77	+0.4
1,694,215	-		DDA3937_RS07500	0.77	-0.2
1,694,215	-		DDA3937_RS07500	0.77	-2.0
1,694,215	-		DDA3937_RS07500	0.77	-2.0
1,694,218	+		DDA3937_RS07500	0.78	+0.0
1,694,218	+		DDA3937_RS07500	0.78	-0.8
1,694,218	+		DDA3937_RS07500	0.78	-1.0
1,694,218	+		DDA3937_RS07500	0.78	-2.2
1,694,218	+		DDA3937_RS07500	0.78	-2.4
1,694,218	+		DDA3937_RS07500	0.78	-1.7
1,694,218	+		DDA3937_RS07500	0.78	-3.3
1,694,219	-				+1.4
1,694,219	-		DDA3937_RS07500	0.78	-0.8
1,694,219	-		DDA3937_RS07500	0.78	-0.3
1,694,219	-		DDA3937_RS07500	0.78	-0.2
1,694,219	-		DDA3937_RS07500	0.78	+0.1
1,694,219	-		DDA3937_RS07500	0.78	-0.8
1,694,219	-		DDA3937_RS07500	0.78	-2.0
1,694,219	-		DDA3937_RS07500	0.78	+0.3
1,694,219	-		DDA3937_RS07500	0.78	-1.9
1,694,219	-		DDA3937_RS07500	0.78	+2.8
1,694,219	-				+0.4
1,694,332	+		DDA3937_RS07500	0.89	-0.2
1,694,332	+		DDA3937_RS07500	0.89	-1.8
1,694,333	-		DDA3937_RS07500	0.89	-2.0
1,694,333	-		DDA3937_RS07500	0.89	-3.0