Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06580

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,469,060	+		DDA3937_RS06575	0.68	-0.6
1,469,089	+		DDA3937_RS06575	0.69	-1.1
1,469,089	+		DDA3937_RS06575	0.69	+0.3
1,469,089	+		DDA3937_RS06575	0.69	+0.0
1,469,090	-		DDA3937_RS06575	0.69	+0.2
1,469,229	-		DDA3937_RS06575	0.74	-1.1
1,469,269	-		DDA3937_RS06575	0.75	-0.5
1,469,323	-		DDA3937_RS06575	0.77	-0.4
1,469,374	+		DDA3937_RS06575	0.78	+1.0
1,469,374	+		DDA3937_RS06575	0.78	+1.6
1,469,374	+		DDA3937_RS06575	0.78	-1.2
1,469,374	+		DDA3937_RS06575	0.78	+1.0
1,469,375	-		DDA3937_RS06575	0.78	-0.2
1,469,375	-		DDA3937_RS06575	0.78	-0.4
1,469,375	-		DDA3937_RS06575	0.78	+0.0
1,469,375	-		DDA3937_RS06575	0.78	+1.5
1,469,375	-		DDA3937_RS06575	0.78	+0.9
1,469,375	-		DDA3937_RS06575	0.78	-0.9
1,469,501	-		DDA3937_RS06575	0.82	+3.5
1,469,563	+		DDA3937_RS06575	0.84	-1.7
1,469,563	+		DDA3937_RS06575	0.84	+0.1
1,469,563	+		DDA3937_RS06575	0.84	+0.3
1,469,563	+		DDA3937_RS06575	0.84	+0.7
1,469,564	-		DDA3937_RS06575	0.84	+0.7
1,469,564	-		DDA3937_RS06575	0.84	-0.9
1,469,635	+		DDA3937_RS06575	0.86	-2.5
1,469,635	+		DDA3937_RS06575	0.86	+1.3
1,469,636	-		DDA3937_RS06575	0.86	-0.5
1,469,641	+		DDA3937_RS06575	0.87	+0.8
1,469,641	+		DDA3937_RS06575	0.87	+0.9
1,469,641	+		DDA3937_RS06575	0.87	-3.1
1,469,641	+		DDA3937_RS06575	0.87	-0.1
1,469,641	+		DDA3937_RS06575	0.87	+0.3
1,469,641	+				+0.5
1,469,641	+		DDA3937_RS06575	0.87	+0.8
1,469,641	+		DDA3937_RS06575	0.87	-1.7
1,469,642	-		DDA3937_RS06575	0.87	-3.6
1,469,642	-		DDA3937_RS06575	0.87	-2.2
1,469,642	-		DDA3937_RS06575	0.87	+0.4
1,469,642	-		DDA3937_RS06575	0.87	-2.5
1,469,642	-		DDA3937_RS06575	0.87	+0.0
1,469,642	-		DDA3937_RS06575	0.87	+0.9
1,469,693	+		DDA3937_RS06575	0.88	-1.5
1,469,710	-				+4.5
1,469,710	-		DDA3937_RS06575	0.89	-1.0
1,469,722	+		DDA3937_RS06575	0.89	+0.1
1,469,723	-		DDA3937_RS06575	0.89	-0.4
1,469,779	+				-0.1
1,469,780	-				+0.5
1,469,786	-				-2.0
1,469,786	-				+1.8
1,469,786	-				+1.8
1,469,786	-				-0.2
1,469,902	+				-1.1
1,470,059	+				-1.4
1,470,059	+				+0.2
1,470,059	+				+0.5
1,470,059	+				-1.9
1,470,059	+				-0.1
1,470,060	-				+1.5
1,470,060	-				-1.1
1,470,060	-				-2.1
1,470,060	-				-1.1
1,470,119	-				+0.5
1,470,498	+		DDA3937_RS06580	0.29	+0.7
1,470,499	-		DDA3937_RS06580	0.29	-2.0
1,470,499	-		DDA3937_RS06580	0.29	-2.1
1,470,518	+		DDA3937_RS06580	0.30	-0.5
1,470,519	-		DDA3937_RS06580	0.31	-1.5
1,470,519	-		DDA3937_RS06580	0.31	+1.7
1,470,519	-		DDA3937_RS06580	0.31	-2.5
1,470,522	-		DDA3937_RS06580	0.31	-0.5
1,470,612	+		DDA3937_RS06580	0.37	+1.6
1,470,612	+		DDA3937_RS06580	0.37	+0.3
1,470,612	+		DDA3937_RS06580	0.37	+1.0
1,470,612	+		DDA3937_RS06580	0.37	-0.1
1,470,613	-		DDA3937_RS06580	0.37	-1.0
1,470,613	-		DDA3937_RS06580	0.37	+0.5
1,470,613	-		DDA3937_RS06580	0.37	-1.9
1,470,613	-		DDA3937_RS06580	0.37	-1.4
1,470,616	+		DDA3937_RS06580	0.37	-0.0
1,470,617	-		DDA3937_RS06580	0.37	+0.3
1,470,650	+		DDA3937_RS06580	0.39	-0.1
1,470,739	+		DDA3937_RS06580	0.45	-0.1
1,470,740	-		DDA3937_RS06580	0.45	-0.2
1,470,740	-		DDA3937_RS06580	0.45	-1.9
1,470,740	-		DDA3937_RS06580	0.45	+1.2
1,470,773	+		DDA3937_RS06580	0.47	-1.2
1,470,773	+		DDA3937_RS06580	0.47	-3.1
1,470,773	+		DDA3937_RS06580	0.47	+1.5
1,470,773	+				+0.5
1,470,773	+		DDA3937_RS06580	0.47	-0.9
1,470,774	-		DDA3937_RS06580	0.47	+0.8
1,470,774	-		DDA3937_RS06580	0.47	+1.8
1,470,774	-		DDA3937_RS06580	0.47	+1.1
1,470,798	+				-0.1
1,470,897	+		DDA3937_RS06580	0.56	-0.6
1,470,898	-		DDA3937_RS06580	0.56	-0.5
1,470,898	-		DDA3937_RS06580	0.56	-2.1
1,471,032	-				-0.9
1,471,050	+		DDA3937_RS06580	0.66	+0.6
1,471,051	-		DDA3937_RS06580	0.66	-1.5
1,471,051	-		DDA3937_RS06580	0.66	+0.0
1,471,138	+		DDA3937_RS06580	0.71	-1.2
1,471,138	+		DDA3937_RS06580	0.71	+0.1
1,471,138	+		DDA3937_RS06580	0.71	+0.2
1,471,139	-		DDA3937_RS06580	0.71	+1.5
1,471,139	-		DDA3937_RS06580	0.71	+0.5
1,471,329	+		DDA3937_RS06580	0.84	-0.6
1,471,354	+		DDA3937_RS06580	0.86	-0.9
1,471,354	+		DDA3937_RS06580	0.86	-1.1
1,471,355	-		DDA3937_RS06580	0.86	+1.2
1,471,366	+		DDA3937_RS06580	0.86	+0.7
1,471,407	+		DDA3937_RS06580	0.89	+1.3
1,471,407	+		DDA3937_RS06580	0.89	+0.5
1,471,407	+		DDA3937_RS06580	0.89	+4.6
1,471,408	-		DDA3937_RS06580	0.89	-1.4
1,471,408	-		DDA3937_RS06580	0.89	-0.5
1,471,408	-		DDA3937_RS06580	0.89	+0.2
1,471,408	-		DDA3937_RS06580	0.89	-1.9
1,471,408	-		DDA3937_RS06580	0.89	+3.5
1,471,413	+		DDA3937_RS06580	0.90	-3.0
1,471,414	-		DDA3937_RS06580	0.90	+0.3
1,471,414	-		DDA3937_RS06580	0.90	+1.5
1,471,494	+				+1.0
1,471,495	-				-1.7
1,471,495	-				-2.5
1,471,495	-				+1.0
1,471,495	-				-0.1
1,471,498	-				-0.8
1,471,498	-				-0.0
1,471,555	+				+1.1
1,471,627	-				+0.9
1,471,718	+		DDA3937_RS06585	0.12	+1.5
1,471,805	+		DDA3937_RS06585	0.19	-0.7
1,471,805	+		DDA3937_RS06585	0.19	-0.2
1,471,878	+		DDA3937_RS06585	0.25	-0.4
1,471,994	+		DDA3937_RS06585	0.34	+0.1
1,471,995	-		DDA3937_RS06585	0.34	-4.2
1,471,995	-		DDA3937_RS06585	0.34	-0.9
1,471,997	+		DDA3937_RS06585	0.34	+0.5
1,471,997	+				+0.5
1,471,997	+		DDA3937_RS06585	0.34	+0.7
1,471,997	+		DDA3937_RS06585	0.34	-0.6
1,471,998	-		DDA3937_RS06585	0.34	+1.8
1,471,998	-		DDA3937_RS06585	0.34	+1.5
1,471,998	-		DDA3937_RS06585	0.34	+3.0
1,472,114	+		DDA3937_RS06585	0.43	-0.6
1,472,115	-		DDA3937_RS06585	0.43	-0.9
1,472,332	-		DDA3937_RS06585	0.61	+0.5
1,472,377	+		DDA3937_RS06585	0.64	-0.2
1,472,377	+		DDA3937_RS06585	0.64	-3.6
1,472,377	+		DDA3937_RS06585	0.64	+1.5
1,472,522	+		DDA3937_RS06585	0.76	-0.4
1,472,523	-		DDA3937_RS06585	0.76	-0.9
1,472,523	-		DDA3937_RS06585	0.76	-2.0
1,472,523	-		DDA3937_RS06585	0.76	+1.3
1,472,523	-		DDA3937_RS06585	0.76	-1.2
1,472,523	-		DDA3937_RS06585	0.76	+1.5
1,472,523	-		DDA3937_RS06585	0.76	-0.9
1,472,523	-		DDA3937_RS06585	0.76	-0.5
1,472,523	-		DDA3937_RS06585	0.76	-3.3