Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06565

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,463,667	+		DDA3937_RS06560	0.20	-1.4
1,463,668	-		DDA3937_RS06560	0.20	+1.0
1,463,722	+		DDA3937_RS06560	0.25	+2.5
1,463,722	+		DDA3937_RS06560	0.25	+1.5
1,463,733	+		DDA3937_RS06560	0.26	-1.5
1,463,751	-		DDA3937_RS06560	0.28	-1.7
1,463,758	+		DDA3937_RS06560	0.29	-0.7
1,463,758	+		DDA3937_RS06560	0.29	+1.6
1,463,758	+		DDA3937_RS06560	0.29	+0.2
1,463,759	-		DDA3937_RS06560	0.29	+1.0
1,463,759	-		DDA3937_RS06560	0.29	-0.9
1,463,759	-		DDA3937_RS06560	0.29	-1.0
1,463,891	+		DDA3937_RS06560	0.42	-0.8
1,463,907	+		DDA3937_RS06560	0.43	-0.4
1,463,907	+		DDA3937_RS06560	0.43	+1.7
1,463,907	+		DDA3937_RS06560	0.43	-0.9
1,463,907	+		DDA3937_RS06560	0.43	-2.5
1,463,908	-		DDA3937_RS06560	0.43	-2.7
1,463,908	-		DDA3937_RS06560	0.43	-0.5
1,463,908	-		DDA3937_RS06560	0.43	+0.3
1,464,037	+				-0.5
1,464,143	+		DDA3937_RS06560	0.65	-1.4
1,464,143	+		DDA3937_RS06560	0.65	-1.9
1,464,144	-		DDA3937_RS06560	0.66	+2.8
1,464,174	+		DDA3937_RS06560	0.68	+0.6
1,464,174	+		DDA3937_RS06560	0.68	-2.6
1,464,174	+		DDA3937_RS06560	0.68	-1.4
1,464,175	-		DDA3937_RS06560	0.68	-1.0
1,464,175	-		DDA3937_RS06560	0.68	-2.0
1,464,295	+		DDA3937_RS06560	0.80	-0.8
1,464,295	+		DDA3937_RS06560	0.80	+1.1
1,464,295	+		DDA3937_RS06560	0.80	+0.8
1,464,295	+		DDA3937_RS06560	0.80	+0.0
1,464,296	-		DDA3937_RS06560	0.80	-1.0
1,464,296	-		DDA3937_RS06560	0.80	+1.1
1,464,296	-		DDA3937_RS06560	0.80	-0.8
1,464,296	-		DDA3937_RS06560	0.80	-0.4
1,464,296	-		DDA3937_RS06560	0.80	+1.3
1,464,296	-		DDA3937_RS06560	0.80	-1.0
1,464,307	+		DDA3937_RS06560	0.81	-0.5
1,464,307	+		DDA3937_RS06560	0.81	+0.2
1,464,308	-		DDA3937_RS06560	0.81	-2.7
1,464,308	-		DDA3937_RS06560	0.81	-0.4
1,464,308	-		DDA3937_RS06560	0.81	-0.4
1,464,308	-		DDA3937_RS06560	0.81	+0.3
1,464,308	-		DDA3937_RS06560	0.81	-1.1
1,464,308	-		DDA3937_RS06560	0.81	+1.2
1,464,410	-				-0.9
1,464,410	-				-0.6
1,464,411	+				+1.2
1,464,411	+				-1.3
1,464,545	+				+3.2
1,464,545	+				+2.2
1,464,545	+				+0.6
1,464,545	+				+0.6
1,464,546	-				-0.1
1,464,546	-				+0.7
1,464,559	+				+0.1
1,464,560	-				-0.8
1,464,560	-				-1.8
1,464,591	+				+0.9
1,464,683	+				+0.9
1,464,683	+				-2.4
1,464,714	-				+0.4
1,464,728	+				-1.7
1,464,824	+		DDA3937_RS06565	0.15	+0.6
1,464,824	+		DDA3937_RS06565	0.15	-1.4
1,464,825	-		DDA3937_RS06565	0.15	-0.7
1,464,825	-		DDA3937_RS06565	0.15	-2.7
1,464,825	-		DDA3937_RS06565	0.15	-1.2
1,464,844	+		DDA3937_RS06565	0.16	+0.4
1,464,844	+		DDA3937_RS06565	0.16	-2.9
1,464,844	+		DDA3937_RS06565	0.16	-0.5
1,464,844	+		DDA3937_RS06565	0.16	-2.1
1,464,940	+		DDA3937_RS06565	0.24	+0.5
1,464,940	+		DDA3937_RS06565	0.24	-0.6
1,465,111	+		DDA3937_RS06565	0.37	-0.2
1,465,150	+		DDA3937_RS06565	0.40	-0.7
1,465,151	-		DDA3937_RS06565	0.40	-0.3
1,465,232	+		DDA3937_RS06565	0.46	+0.8
1,465,232	+		DDA3937_RS06565	0.46	-1.5
1,465,233	-		DDA3937_RS06565	0.46	-0.7
1,465,233	-		DDA3937_RS06565	0.46	-0.5
1,465,233	-		DDA3937_RS06565	0.46	-3.0
1,465,233	-		DDA3937_RS06565	0.46	-0.3
1,465,235	-		DDA3937_RS06565	0.46	+1.2
1,465,339	-		DDA3937_RS06565	0.54	-1.4
1,465,339	-		DDA3937_RS06565	0.54	+1.1
1,465,339	-		DDA3937_RS06565	0.54	-0.1
1,465,537	+		DDA3937_RS06565	0.69	+1.3
1,465,538	-		DDA3937_RS06565	0.69	+1.0
1,465,538	-		DDA3937_RS06565	0.69	+0.5
1,465,540	-		DDA3937_RS06565	0.69	-1.1
1,465,540	-		DDA3937_RS06565	0.69	-2.2
1,465,540	-		DDA3937_RS06565	0.69	-0.5
1,465,559	-		DDA3937_RS06565	0.70	+0.9
1,465,559	-				+0.1
1,465,657	+				+1.5
1,465,657	+		DDA3937_RS06565	0.78	-0.1
1,465,668	+		DDA3937_RS06565	0.79	-1.4
1,465,668	+		DDA3937_RS06565	0.79	-2.4
1,465,668	+		DDA3937_RS06565	0.79	-3.2
1,465,668	+		DDA3937_RS06565	0.79	+1.0
1,465,683	+		DDA3937_RS06565	0.80	+1.9
1,465,684	-		DDA3937_RS06565	0.80	-0.5
1,465,722	+		DDA3937_RS06565	0.83	-1.5
1,465,723	-		DDA3937_RS06565	0.83	-0.8
1,465,732	-		DDA3937_RS06565	0.84	-1.1
1,465,756	+		DDA3937_RS06565	0.85	-1.5
1,465,756	+		DDA3937_RS06565	0.85	+1.1
1,465,756	+		DDA3937_RS06565	0.85	-1.0
1,465,765	+		DDA3937_RS06565	0.86	-0.2
1,465,833	+				-0.9
1,465,833	+				-0.9
1,465,833	+				-3.2
1,465,834	-				-1.5
1,465,855	+				-2.0
1,465,856	-				-0.0
1,465,859	-				-1.1
1,465,943	+				-2.0
1,465,943	+				+0.3
1,465,943	+				-0.5
1,465,943	+				-1.7
1,465,943	+				-1.1
1,465,944	-				+0.0
1,465,944	-				-0.2
1,465,944	-				-1.4
1,465,944	-				+0.5
1,465,957	+				-2.7
1,465,957	+				+0.5
1,465,985	-				+1.6
1,465,986	+				-0.9
1,465,987	-				-0.5
1,465,990	+				+0.6
1,465,990	+				-1.2
1,465,990	+				+1.4
1,465,990	+				-2.0
1,465,990	+				-0.7
1,465,990	+				-1.0
1,465,991	-				-0.3
1,465,991	-				-2.9
1,465,993	+				-1.1
1,465,993	+				-2.2
1,465,993	+				+2.3
1,465,994	-				+0.1
1,465,994	-				+0.5
1,465,994	-				+2.0
1,465,994	-				-0.9
1,466,004	+				+2.5
1,466,004	+				+1.6
1,466,004	+				-0.4
1,466,005	-				+1.8
1,466,007	-				-0.0
1,466,007	-				-2.1
1,466,013	+				-0.9
1,466,014	-				-0.5
1,466,014	-				-2.1
1,466,014	-				-1.9
1,466,014	-				-0.5
1,466,014	-				-0.3
1,466,028	-				+3.0
1,466,028	-				+1.5
1,466,795	-				+0.5
1,466,814	-				-1.4
1,466,859	-				-0.3
1,466,880	-				-3.3
1,466,881	+				+1.3
1,466,881	+				+1.1
1,466,881	+				-2.1
1,466,882	-				+1.3
1,466,946	-				-1.4
1,466,946	-				-1.1
1,466,946	-				-1.9