Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06550

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,460,500	+				-1.4
1,460,500	+				-1.4
1,460,501	-				+0.9
1,460,504	-				+1.5
1,460,504	-				-1.5
1,460,546	+		DDA3937_RS06545	0.13	+2.6
1,460,546	+		DDA3937_RS06545	0.13	-2.5
1,460,547	-		DDA3937_RS06545	0.14	-0.3
1,460,547	-		DDA3937_RS06545	0.14	-1.7
1,460,547	-		DDA3937_RS06545	0.14	-1.1
1,460,549	+		DDA3937_RS06545	0.14	-2.0
1,460,549	+		DDA3937_RS06545	0.14	+1.0
1,460,549	+		DDA3937_RS06545	0.14	-2.4
1,460,550	-				+0.5
1,460,550	-		DDA3937_RS06545	0.14	-0.9
1,460,550	-		DDA3937_RS06545	0.14	-0.5
1,460,550	-		DDA3937_RS06545	0.14	-1.9
1,460,675	-		DDA3937_RS06545	0.26	+0.8
1,460,694	+		DDA3937_RS06545	0.28	+0.1
1,460,694	+				-0.1
1,460,819	+		DDA3937_RS06545	0.40	+0.5
1,460,819	+		DDA3937_RS06545	0.40	-1.5
1,460,819	+		DDA3937_RS06545	0.40	+0.9
1,460,954	+		DDA3937_RS06545	0.52	-0.9
1,460,954	+		DDA3937_RS06545	0.52	+1.7
1,460,954	+		DDA3937_RS06545	0.52	+3.0
1,460,954	+		DDA3937_RS06545	0.52	+3.9
1,460,954	+		DDA3937_RS06545	0.52	-3.4
1,460,955	-		DDA3937_RS06545	0.53	-2.2
1,460,955	-		DDA3937_RS06545	0.53	-1.0
1,460,955	-		DDA3937_RS06545	0.53	+2.0
1,461,163	-		DDA3937_RS06545	0.72	+1.1
1,461,436	+				+0.5
1,461,436	+				+3.5
1,461,449	+				+1.3
1,461,449	+				+2.7
1,461,449	+				+2.3
1,461,449	+				-1.4
1,461,449	+				-2.7
1,461,449	+				-1.5
1,461,449	+				-2.0
1,461,449	+				+0.9
1,461,449	+				+0.4
1,461,449	+				+0.1
1,461,449	+				-0.9
1,461,449	+				+1.0
1,461,449	+				+1.5
1,461,450	-				-2.5
1,461,450	-				-0.5
1,461,450	-				-0.3
1,461,450	-				-2.5
1,461,450	-				-0.4
1,461,450	-				+1.3
1,461,453	+				-1.5
1,461,453	+				-2.9
1,461,453	+				+2.7
1,461,453	+				+1.9
1,461,453	+				+1.7
1,461,453	+				+3.5
1,461,453	+				+1.7
1,461,453	+				+3.9
1,461,453	+				+1.5
1,461,453	+				+1.4
1,461,453	+				+0.1
1,461,454	-				-2.1
1,461,454	-				+1.6
1,461,469	+				-2.0
1,461,495	-				-0.6
1,461,532	-				-0.5
1,461,593	+		DDA3937_RS06550	0.16	+0.9
1,461,615	+		DDA3937_RS06550	0.19	-1.7
1,461,616	-		DDA3937_RS06550	0.20	+1.0
1,461,631	+				+2.3
1,461,631	+		DDA3937_RS06550	0.22	-1.9
1,461,637	+		DDA3937_RS06550	0.22	+0.2
1,461,638	-		DDA3937_RS06550	0.23	+1.6
1,461,656	-		DDA3937_RS06550	0.25	-1.7
1,461,667	+		DDA3937_RS06550	0.27	-1.5
1,461,667	+		DDA3937_RS06550	0.27	+0.5
1,461,667	+		DDA3937_RS06550	0.27	+0.5
1,461,668	-				+2.6
1,461,668	-		DDA3937_RS06550	0.27	-1.3
1,461,668	-		DDA3937_RS06550	0.27	-2.5
1,461,675	+		DDA3937_RS06550	0.28	-2.5
1,461,675	+		DDA3937_RS06550	0.28	+1.0
1,461,676	-		DDA3937_RS06550	0.28	-1.1
1,461,676	-		DDA3937_RS06550	0.28	+3.9
1,461,676	-		DDA3937_RS06550	0.28	-1.9
1,461,676	-		DDA3937_RS06550	0.28	+1.1
1,461,720	+		DDA3937_RS06550	0.34	-0.9
1,461,720	+		DDA3937_RS06550	0.34	+1.2
1,461,720	+		DDA3937_RS06550	0.34	-0.1
1,461,720	+		DDA3937_RS06550	0.34	-2.5
1,461,721	-		DDA3937_RS06550	0.34	+0.3
1,461,850	-		DDA3937_RS06550	0.52	+2.2
1,461,850	-		DDA3937_RS06550	0.52	+0.9
1,461,934	+		DDA3937_RS06550	0.63	-1.7
1,461,934	+		DDA3937_RS06550	0.63	+3.1
1,461,935	-		DDA3937_RS06550	0.63	-1.3
1,461,935	-		DDA3937_RS06550	0.63	-0.5
1,461,977	-		DDA3937_RS06550	0.69	-1.5
1,462,000	+		DDA3937_RS06550	0.72	+1.5
1,462,014	+		DDA3937_RS06550	0.74	-0.5
1,462,014	+		DDA3937_RS06550	0.74	-0.7
1,462,015	-		DDA3937_RS06550	0.75	-3.0
1,462,015	-		DDA3937_RS06550	0.75	-1.5
1,462,015	-		DDA3937_RS06550	0.75	-1.1
1,462,086	+		DDA3937_RS06550	0.84	-1.5
1,462,086	+		DDA3937_RS06550	0.84	-1.9
1,462,086	+		DDA3937_RS06550	0.84	-0.4
1,462,086	+		DDA3937_RS06550	0.84	+2.7
1,462,087	-		DDA3937_RS06550	0.84	-0.9
1,462,087	-		DDA3937_RS06550	0.84	-1.3
1,462,087	-		DDA3937_RS06550	0.84	-0.1
1,462,104	+		DDA3937_RS06550	0.87	-2.5
1,462,105	-		DDA3937_RS06550	0.87	-1.1
1,462,105	-		DDA3937_RS06550	0.87	-1.7
1,462,105	-		DDA3937_RS06550	0.87	+0.7
1,462,105	-				+1.5
1,462,151	+				-0.9
1,462,152	-				-1.6
1,462,166	+				-2.1
1,462,195	+				-1.7
1,462,196	-				-2.8
1,462,197	+				-2.9
1,462,198	-				-2.3
1,462,198	-				-1.5
1,462,198	-				-0.6
1,462,198	-				-1.3
1,462,260	+				-0.6
1,462,260	+				-1.1
1,462,261	-				-1.7
1,462,284	-				+0.5
1,462,319	+				-2.8
1,462,353	-		DDA3937_RS06555	0.11	-1.5
1,462,367	+		DDA3937_RS06555	0.13	+1.4
1,462,367	+		DDA3937_RS06555	0.13	-1.4
1,462,368	-		DDA3937_RS06555	0.13	-1.8
1,462,368	-				-0.5
1,462,368	-		DDA3937_RS06555	0.13	-0.2
1,462,368	-		DDA3937_RS06555	0.13	-0.1
1,462,368	-		DDA3937_RS06555	0.13	-1.4
1,462,384	+		DDA3937_RS06555	0.15	+3.6
1,462,385	-		DDA3937_RS06555	0.15	-2.6
1,462,426	+		DDA3937_RS06555	0.19	-1.5
1,462,426	+		DDA3937_RS06555	0.19	+1.6
1,462,426	+		DDA3937_RS06555	0.19	-0.4
1,462,426	+		DDA3937_RS06555	0.19	+1.4
1,462,427	-		DDA3937_RS06555	0.19	-0.4
1,462,427	-		DDA3937_RS06555	0.19	+0.5
1,462,427	-		DDA3937_RS06555	0.19	-0.5
1,462,459	+		DDA3937_RS06555	0.23	-0.9
1,462,459	+		DDA3937_RS06555	0.23	-1.4
1,462,474	+		DDA3937_RS06555	0.24	+0.3
1,462,474	+		DDA3937_RS06555	0.24	-0.8
1,462,474	+		DDA3937_RS06555	0.24	-1.4
1,462,474	+		DDA3937_RS06555	0.24	+0.2
1,462,474	+		DDA3937_RS06555	0.24	-2.5
1,462,474	+		DDA3937_RS06555	0.24	-1.4
1,462,474	+		DDA3937_RS06555	0.24	-1.1
1,462,474	+		DDA3937_RS06555	0.24	-0.0
1,462,474	+		DDA3937_RS06555	0.24	-0.9
1,462,474	+		DDA3937_RS06555	0.24	-0.5
1,462,474	+		DDA3937_RS06555	0.24	+0.5
1,462,474	+		DDA3937_RS06555	0.24	-2.2
1,462,475	-		DDA3937_RS06555	0.24	-0.5
1,462,475	-				-0.5
1,462,475	-		DDA3937_RS06555	0.24	+1.9
1,462,475	-		DDA3937_RS06555	0.24	-1.5
1,462,475	-		DDA3937_RS06555	0.24	-1.5
1,462,475	-		DDA3937_RS06555	0.24	-3.5
1,462,484	-		DDA3937_RS06555	0.25	-2.2
1,462,615	+				-0.9
1,462,615	+		DDA3937_RS06555	0.39	-1.5
1,462,615	+		DDA3937_RS06555	0.39	+0.9
1,462,615	+		DDA3937_RS06555	0.39	-1.9
1,462,615	+		DDA3937_RS06555	0.39	-1.1
1,462,663	-		DDA3937_RS06555	0.45	-2.5
1,462,741	-		DDA3937_RS06555	0.53	-2.9
1,462,879	-		DDA3937_RS06555	0.68	-1.6
1,462,904	-				+1.7
1,462,904	-		DDA3937_RS06555	0.70	+0.5
1,462,944	-		DDA3937_RS06555	0.75	+1.7
1,462,944	-		DDA3937_RS06555	0.75	+0.1
1,462,944	-		DDA3937_RS06555	0.75	-2.1
1,463,071	+		DDA3937_RS06555	0.88	+0.2
1,463,097	+				+0.3
1,463,187	-				-0.5
1,463,193	+				-2.2