Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06335

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,414,318	-				-1.4
1,414,318	-				-1.8
1,414,321	+				-1.9
1,414,321	+				+1.2
1,414,322	-				-0.5
1,414,325	+				-1.1
1,414,325	+				-1.8
1,414,325	+				-0.2
1,414,326	-				-0.3
1,414,326	-				+0.9
1,414,326	-				+1.9
1,414,326	-				+0.1
1,414,326	-				+0.3
1,414,326	-				+0.5
1,414,329	+				-1.5
1,414,329	+				-1.7
1,414,329	+				-0.7
1,414,329	+				+0.2
1,414,329	+				+1.6
1,414,329	+				-2.0
1,414,329	+				-0.7
1,414,329	+				-1.7
1,414,330	-				-1.0
1,414,330	-				-2.0
1,414,330	-				-1.9
1,414,330	-				+1.3
1,414,345	+				-1.3
1,414,350	+				-2.2
1,414,350	+				-2.9
1,414,350	+				-2.0
1,414,350	+				+3.9
1,414,350	+				+0.8
1,414,350	+				-2.0
1,414,351	-				-1.6
1,414,351	-				+2.5
1,414,351	-				-2.4
1,414,351	-				+1.0
1,414,351	-				-0.4
1,414,353	+				+2.6
1,414,353	+				+0.6
1,414,353	+				-0.1
1,414,353	+				+1.1
1,414,353	+				-1.5
1,414,354	-				-2.2
1,414,992	+				-0.5
1,415,057	-				-1.1
1,415,077	-				+0.5
1,415,098	+				-1.3
1,415,099	-				-2.1
1,415,119	-				+0.1
1,415,156	+				+1.6
1,415,175	-				-1.6
1,415,176	+				-1.3
1,415,177	-				+0.9
1,415,177	-				-0.8
1,415,217	-				-1.1
1,415,217	-				-3.4
1,415,237	+				-1.1
1,415,237	+				+2.2
1,415,265	-				-1.5
1,415,282	-				+0.7
1,415,282	-				-1.0
1,415,282	-				-2.5
1,415,282	-				-1.2
1,415,296	+				-0.8
1,415,306	-				-0.0
1,415,317	+				-2.7
1,415,317	+				-0.5
1,415,317	+				+1.9
1,415,335	+				+0.5
1,415,335	+				+1.2
1,415,354	-				-1.3
1,415,354	-				+0.9
1,415,354	-				-1.8
1,415,405	+				-2.4
1,415,414	+				+0.8
1,415,414	+				-1.8
1,415,414	+				+0.0
1,415,414	+				-0.3
1,415,415	-				-1.5
1,415,415	-				-0.5
1,415,415	-				+0.5
1,415,415	-				+0.1
1,415,471	-				+0.3
1,415,471	-				+0.7
1,415,501	+		DDA3937_RS06335	0.11	+0.1
1,415,501	+		DDA3937_RS06335	0.11	+0.5
1,415,501	+		DDA3937_RS06335	0.11	-0.1
1,415,540	+		DDA3937_RS06335	0.13	+1.6
1,415,540	+		DDA3937_RS06335	0.13	-1.7
1,415,607	+		DDA3937_RS06335	0.17	+0.9
1,415,632	+		DDA3937_RS06335	0.19	-1.6
1,415,633	-		DDA3937_RS06335	0.19	+1.0
1,415,705	-		DDA3937_RS06335	0.23	+2.1
1,415,759	+		DDA3937_RS06335	0.26	-0.1
1,415,759	+		DDA3937_RS06335	0.26	-0.8
1,415,760	-		DDA3937_RS06335	0.26	-0.7
1,415,779	+				+2.5
1,415,779	+		DDA3937_RS06335	0.27	+0.9
1,415,780	-		DDA3937_RS06335	0.27	-0.1
1,415,780	-		DDA3937_RS06335	0.27	+1.3
1,415,827	+		DDA3937_RS06335	0.30	-0.7
1,415,827	+		DDA3937_RS06335	0.30	-1.3
1,415,830	+		DDA3937_RS06335	0.30	+0.6
1,415,879	-				+2.0
1,415,954	+		DDA3937_RS06335	0.38	-2.6
1,416,091	+		DDA3937_RS06335	0.46	+0.0
1,416,109	+		DDA3937_RS06335	0.47	-1.5
1,416,145	+		DDA3937_RS06335	0.49	-0.3
1,416,145	+		DDA3937_RS06335	0.49	-3.0
1,416,145	+		DDA3937_RS06335	0.49	+0.9
1,416,146	-		DDA3937_RS06335	0.49	-2.0
1,416,146	-		DDA3937_RS06335	0.49	-3.6
1,416,146	-		DDA3937_RS06335	0.49	+1.6
1,416,146	-		DDA3937_RS06335	0.49	-0.1
1,416,146	-		DDA3937_RS06335	0.49	+0.3
1,416,146	-		DDA3937_RS06335	0.49	+2.1
1,416,146	-		DDA3937_RS06335	0.49	-2.5
1,416,149	+		DDA3937_RS06335	0.49	-0.5
1,416,150	-		DDA3937_RS06335	0.49	-1.4
1,416,242	-		DDA3937_RS06335	0.55	-2.2
1,416,264	+		DDA3937_RS06335	0.56	+0.6
1,416,264	+		DDA3937_RS06335	0.56	+1.1
1,416,265	-		DDA3937_RS06335	0.56	+0.5
1,416,265	-				+0.5
1,416,427	+		DDA3937_RS06335	0.66	-0.8
1,416,442	+		DDA3937_RS06335	0.67	-1.1
1,416,442	+		DDA3937_RS06335	0.67	-1.4
1,416,443	-		DDA3937_RS06335	0.67	-0.9
1,416,443	-		DDA3937_RS06335	0.67	+0.0
1,416,525	+		DDA3937_RS06335	0.71	-3.0
1,416,682	+		DDA3937_RS06335	0.81	-1.3
1,416,682	+		DDA3937_RS06335	0.81	-0.8
1,416,683	-		DDA3937_RS06335	0.81	-0.8
1,416,683	-		DDA3937_RS06335	0.81	-0.8
1,416,683	-		DDA3937_RS06335	0.81	+0.7
1,416,718	+		DDA3937_RS06335	0.83	-0.8
1,416,718	+		DDA3937_RS06335	0.83	+1.9
1,416,979	+				-1.1
1,416,980	-				+3.2
1,417,009	+				-0.5
1,417,009	+				+1.1
1,417,009	+				-0.5
1,417,009	+				+1.0
1,417,009	+				+0.3
1,417,010	-				-3.4
1,417,010	-				-0.8
1,417,010	-				-1.0
1,417,010	-				+0.6
1,417,010	-				+1.1
1,417,082	+		DDA3937_RS06340	0.12	+0.5
1,417,157	-		DDA3937_RS06340	0.38	-2.7
1,417,219	+		DDA3937_RS06340	0.60	+0.7
1,417,229	+		DDA3937_RS06340	0.64	+0.7
1,417,330	+				+1.2
1,417,330	+				+1.0
1,417,330	+				-1.1
1,417,331	-				+0.4
1,417,331	-				+1.1
1,417,334	+				-1.3
1,417,334	+				+3.1
1,417,334	+				+0.5
1,417,334	+				-0.8
1,417,334	+				+1.8
1,417,335	-				+2.6
1,417,340	+				-0.1
1,417,341	-				+0.9
1,417,341	-				-1.0
1,417,341	-				-1.1
1,417,341	-				-1.1
1,417,442	+				+1.5
1,417,442	+				+0.2
1,417,442	+				+1.7
1,417,443	-				+1.3
1,417,443	-				-3.0
1,417,443	-				+1.2
1,417,443	-				+1.3
1,417,443	-				+0.7
1,417,443	-				+1.3
1,417,481	-				-0.8
1,417,549	+				-0.4
1,417,765	-		DDA3937_RS06345	0.19	+0.0
1,417,787	-		DDA3937_RS06345	0.21	+0.7
1,417,842	+		DDA3937_RS06345	0.28	+2.6
1,417,843	-		DDA3937_RS06345	0.29	+0.0
1,417,867	+		DDA3937_RS06345	0.32	+0.2
1,417,867	+		DDA3937_RS06345	0.32	+0.7
1,417,868	-		DDA3937_RS06345	0.32	+0.1
1,418,000	-		DDA3937_RS06345	0.49	+2.7
1,418,000	-		DDA3937_RS06345	0.49	+0.4