Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06065

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06055 and DDA3937_RS06060 are separated by 2 nucleotidesDDA3937_RS06060 and DDA3937_RS06065 are separated by 102 nucleotidesDDA3937_RS06065 and DDA3937_RS06070 are separated by 16 nucleotides DDA3937_RS06055: DDA3937_RS06055 - thioredoxin-dependent thiol peroxidase, at 1,363,834 to 1,364,301 _RS06055 DDA3937_RS06060: DDA3937_RS06060 - glycine cleavage system transcriptional repressor, at 1,364,304 to 1,364,918 _RS06060 DDA3937_RS06065: DDA3937_RS06065 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,365,021 to 1,365,899 _RS06065 DDA3937_RS06070: DDA3937_RS06070 - outer membrane protein assembly factor BamC, at 1,365,916 to 1,366,956 _RS06070 Position (kb) 1365 1366Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1364.058 kb on + strand, within DDA3937_RS06055at 1364.189 kb on + strand, within DDA3937_RS06055at 1364.195 kb on + strand, within DDA3937_RS06055at 1364.195 kb on + strand, within DDA3937_RS06055at 1364.196 kb on - strand, within DDA3937_RS06055at 1364.196 kb on - strand, within DDA3937_RS06055at 1364.196 kb on - strand, within DDA3937_RS06055at 1364.232 kb on + strand, within DDA3937_RS06055at 1364.233 kb on - strand, within DDA3937_RS06055at 1364.305 kb on + strandat 1364.306 kb on - strandat 1364.306 kb on - strandat 1364.336 kb on - strandat 1364.348 kb on + strandat 1364.348 kb on + strandat 1364.348 kb on + strandat 1364.348 kb on + strandat 1364.349 kb on - strandat 1364.349 kb on - strandat 1364.349 kb on - strandat 1364.349 kb on - strandat 1364.349 kb on - strandat 1364.351 kb on + strandat 1364.351 kb on + strandat 1364.352 kb on - strandat 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.375 kb on + strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.376 kb on - strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.379 kb on + strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.380 kb on - strand, within DDA3937_RS06060at 1364.402 kb on + strandat 1364.402 kb on + strand, within DDA3937_RS06060at 1364.402 kb on + strand, within DDA3937_RS06060at 1364.439 kb on - strand, within DDA3937_RS06060at 1364.449 kb on + strand, within DDA3937_RS06060at 1364.449 kb on + strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.450 kb on - strand, within DDA3937_RS06060at 1364.639 kb on + strand, within DDA3937_RS06060at 1364.640 kb on - strand, within DDA3937_RS06060at 1364.690 kb on + strand, within DDA3937_RS06060at 1364.723 kb on + strand, within DDA3937_RS06060at 1364.723 kb on + strand, within DDA3937_RS06060at 1364.724 kb on - strand, within DDA3937_RS06060at 1364.799 kb on - strand, within DDA3937_RS06060at 1364.841 kb on - strand, within DDA3937_RS06060at 1364.851 kb on + strand, within DDA3937_RS06060at 1364.851 kb on + strand, within DDA3937_RS06060at 1364.851 kb on + strand, within DDA3937_RS06060at 1364.851 kb on + strand, within DDA3937_RS06060at 1364.852 kb on - strand, within DDA3937_RS06060at 1364.852 kb on - strand, within DDA3937_RS06060at 1364.852 kb on - strand, within DDA3937_RS06060at 1364.852 kb on - strand, within DDA3937_RS06060at 1364.852 kb on - strand, within DDA3937_RS06060at 1364.852 kb on - strand, within DDA3937_RS06060at 1364.889 kb on - strandat 1364.904 kb on + strandat 1364.904 kb on + strandat 1364.905 kb on - strandat 1364.912 kb on + strandat 1364.912 kb on + strandat 1364.913 kb on - strandat 1364.913 kb on - strandat 1364.919 kb on - strandat 1364.919 kb on - strandat 1364.973 kb on + strandat 1364.973 kb on + strandat 1364.973 kb on + strandat 1364.973 kb on + strandat 1364.973 kb on + strandat 1366.006 kb on + strandat 1366.006 kb on + strandat 1366.006 kb on + strandat 1366.007 kb on - strandat 1366.007 kb on - strandat 1366.007 kb on - strandat 1366.007 kb on - strandat 1366.007 kb on - strandat 1366.009 kb on - strandat 1366.109 kb on - strand, within DDA3937_RS06070at 1366.158 kb on + strand, within DDA3937_RS06070at 1366.427 kb on - strand, within DDA3937_RS06070at 1366.507 kb on + strand, within DDA3937_RS06070at 1366.508 kb on - strand, within DDA3937_RS06070at 1366.509 kb on + strand, within DDA3937_RS06070at 1366.660 kb on + strand, within DDA3937_RS06070at 1366.661 kb on - strand, within DDA3937_RS06070at 1366.671 kb on - strand, within DDA3937_RS06070at 1366.708 kb on - strand, within DDA3937_RS06070at 1366.708 kb on - strand, within DDA3937_RS06070at 1366.708 kb on - strand, within DDA3937_RS06070at 1366.708 kb on - strand, within DDA3937_RS06070at 1366.708 kb on - strand, within DDA3937_RS06070at 1366.756 kb on + strand, within DDA3937_RS06070at 1366.756 kb on + strand, within DDA3937_RS06070at 1366.756 kb on + strand, within DDA3937_RS06070at 1366.756 kb on + strand, within DDA3937_RS06070at 1366.756 kb on + strand, within DDA3937_RS06070at 1366.757 kb on - strand, within DDA3937_RS06070at 1366.757 kb on - strand, within DDA3937_RS06070at 1366.757 kb on - strand, within DDA3937_RS06070at 1366.757 kb on - strand, within DDA3937_RS06070at 1366.757 kb on - strand, within DDA3937_RS06070at 1366.757 kb on - strand, within DDA3937_RS06070at 1366.757 kb on - strand, within DDA3937_RS06070at 1366.758 kb on + strand, within DDA3937_RS06070at 1366.890 kb on + strandat 1366.891 kb on - strandat 1366.891 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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1,364,058 + DDA3937_RS06055 0.48 -1.7
1,364,189 + DDA3937_RS06055 0.76 -1.8
1,364,195 + DDA3937_RS06055 0.77 +0.5
1,364,195 + DDA3937_RS06055 0.77 +0.6
1,364,196 - DDA3937_RS06055 0.77 +0.8
1,364,196 - DDA3937_RS06055 0.77 -0.8
1,364,196 - DDA3937_RS06055 0.77 -2.7
1,364,232 + DDA3937_RS06055 0.85 -0.5
1,364,233 - DDA3937_RS06055 0.85 +0.6
1,364,305 + +0.7
1,364,306 - -0.8
1,364,306 - +1.4
1,364,336 - +0.0
1,364,348 + -0.5
1,364,348 + +1.4
1,364,348 + -0.8
1,364,348 + +1.0
1,364,349 - -2.1
1,364,349 - +1.6
1,364,349 - -0.8
1,364,349 - +0.6
1,364,349 - +1.6
1,364,351 + -2.1
1,364,351 + +0.3
1,364,352 - +0.7
1,364,375 + DDA3937_RS06060 0.12 +1.1
1,364,375 + DDA3937_RS06060 0.12 +1.3
1,364,375 + DDA3937_RS06060 0.12 -1.2
1,364,375 + DDA3937_RS06060 0.12 +0.4
1,364,375 + DDA3937_RS06060 0.12 +1.8
1,364,375 + DDA3937_RS06060 0.12 +2.9
1,364,375 + DDA3937_RS06060 0.12 +0.7
1,364,376 - DDA3937_RS06060 0.12 -1.6
1,364,376 - DDA3937_RS06060 0.12 +0.8
1,364,376 - DDA3937_RS06060 0.12 +1.2
1,364,376 - DDA3937_RS06060 0.12 -0.1
1,364,376 - DDA3937_RS06060 0.12 -0.4
1,364,376 - DDA3937_RS06060 0.12 +0.6
1,364,376 - DDA3937_RS06060 0.12 -2.2
1,364,376 - DDA3937_RS06060 0.12 +0.7
1,364,376 - DDA3937_RS06060 0.12 -1.7
1,364,376 - DDA3937_RS06060 0.12 +0.3
1,364,379 + DDA3937_RS06060 0.12 +1.5
1,364,379 + DDA3937_RS06060 0.12 -2.2
1,364,379 + DDA3937_RS06060 0.12 +1.9
1,364,379 + DDA3937_RS06060 0.12 +2.6
1,364,379 + DDA3937_RS06060 0.12 -3.3
1,364,379 + DDA3937_RS06060 0.12 +2.7
1,364,379 + DDA3937_RS06060 0.12 -0.9
1,364,379 + DDA3937_RS06060 0.12 +0.1
1,364,380 - DDA3937_RS06060 0.12 -0.6
1,364,380 - DDA3937_RS06060 0.12 -1.8
1,364,380 - DDA3937_RS06060 0.12 +0.0
1,364,380 - DDA3937_RS06060 0.12 -1.9
1,364,380 - DDA3937_RS06060 0.12 -1.1
1,364,380 - DDA3937_RS06060 0.12 -0.4
1,364,380 - DDA3937_RS06060 0.12 -3.0
1,364,380 - DDA3937_RS06060 0.12 -0.7
1,364,380 - DDA3937_RS06060 0.12 -2.4
1,364,380 - DDA3937_RS06060 0.12 +1.9
1,364,380 - DDA3937_RS06060 0.12 +0.9
1,364,380 - DDA3937_RS06060 0.12 -0.8
1,364,380 - DDA3937_RS06060 0.12 -1.3
1,364,380 - DDA3937_RS06060 0.12 -0.5
1,364,380 - DDA3937_RS06060 0.12 -1.5
1,364,402 + +1.5
1,364,402 + DDA3937_RS06060 0.16 +0.2
1,364,402 + DDA3937_RS06060 0.16 -2.7
1,364,439 - DDA3937_RS06060 0.22 -1.3
1,364,449 + DDA3937_RS06060 0.24 +1.0
1,364,449 + DDA3937_RS06060 0.24 -1.8
1,364,450 - DDA3937_RS06060 0.24 +0.7
1,364,450 - DDA3937_RS06060 0.24 -0.0
1,364,450 - DDA3937_RS06060 0.24 -0.6
1,364,450 - DDA3937_RS06060 0.24 -0.7
1,364,450 - DDA3937_RS06060 0.24 -1.1
1,364,450 - DDA3937_RS06060 0.24 -1.1
1,364,450 - DDA3937_RS06060 0.24 -1.1
1,364,450 - DDA3937_RS06060 0.24 -1.7
1,364,450 - DDA3937_RS06060 0.24 -0.3
1,364,450 - DDA3937_RS06060 0.24 -1.5
1,364,450 - DDA3937_RS06060 0.24 -2.0
1,364,450 - DDA3937_RS06060 0.24 -3.1
1,364,639 + DDA3937_RS06060 0.54 +0.0
1,364,640 - DDA3937_RS06060 0.55 -0.7
1,364,690 + DDA3937_RS06060 0.63 -0.8
1,364,723 + DDA3937_RS06060 0.68 -1.5
1,364,723 + DDA3937_RS06060 0.68 -0.7
1,364,724 - DDA3937_RS06060 0.68 -0.5
1,364,799 - DDA3937_RS06060 0.80 -2.0
1,364,841 - DDA3937_RS06060 0.87 -1.9
1,364,851 + DDA3937_RS06060 0.89 +1.5
1,364,851 + DDA3937_RS06060 0.89 -2.5
1,364,851 + DDA3937_RS06060 0.89 -0.5
1,364,851 + DDA3937_RS06060 0.89 +0.5
1,364,852 - DDA3937_RS06060 0.89 -4.0
1,364,852 - DDA3937_RS06060 0.89 -2.3
1,364,852 - DDA3937_RS06060 0.89 -1.8
1,364,852 - DDA3937_RS06060 0.89 -0.5
1,364,852 - DDA3937_RS06060 0.89 +3.2
1,364,852 - DDA3937_RS06060 0.89 -2.1
1,364,889 - +1.3
1,364,904 + -0.5
1,364,904 + -2.7
1,364,905 - +0.7
1,364,912 + +0.2
1,364,912 + +1.1
1,364,913 - +0.6
1,364,913 - +1.8
1,364,919 - +2.3
1,364,919 - +0.9
1,364,973 + -0.1
1,364,973 + +0.4
1,364,973 + +0.2
1,364,973 + -0.1
1,364,973 + +0.9
1,366,006 + -0.8
1,366,006 + -0.3
1,366,006 + -0.3
1,366,007 - +0.7
1,366,007 - -3.1
1,366,007 - -0.1
1,366,007 - -0.6
1,366,007 - +2.1
1,366,009 - -0.8
1,366,109 - DDA3937_RS06070 0.19 -1.1
1,366,158 + DDA3937_RS06070 0.23 -1.3
1,366,427 - DDA3937_RS06070 0.49 +1.0
1,366,507 + DDA3937_RS06070 0.57 -2.0
1,366,508 - DDA3937_RS06070 0.57 -3.5
1,366,509 + DDA3937_RS06070 0.57 -3.7
1,366,660 + DDA3937_RS06070 0.71 -2.5
1,366,661 - DDA3937_RS06070 0.72 -1.5
1,366,671 - DDA3937_RS06070 0.73 -2.1
1,366,708 - DDA3937_RS06070 0.76 -2.6
1,366,708 - DDA3937_RS06070 0.76 -0.3
1,366,708 - DDA3937_RS06070 0.76 -1.5
1,366,708 - DDA3937_RS06070 0.76 -3.0
1,366,708 - DDA3937_RS06070 0.76 -0.1
1,366,756 + DDA3937_RS06070 0.81 -1.3
1,366,756 + DDA3937_RS06070 0.81 +1.8
1,366,756 + DDA3937_RS06070 0.81 -0.1
1,366,756 + DDA3937_RS06070 0.81 -2.6
1,366,756 + DDA3937_RS06070 0.81 +2.2
1,366,757 - DDA3937_RS06070 0.81 -1.3
1,366,757 - DDA3937_RS06070 0.81 -1.5
1,366,757 - DDA3937_RS06070 0.81 -2.3
1,366,757 - DDA3937_RS06070 0.81 -2.3
1,366,757 - DDA3937_RS06070 0.81 -1.1
1,366,757 - DDA3937_RS06070 0.81 -2.1
1,366,757 - DDA3937_RS06070 0.81 -1.6
1,366,758 + DDA3937_RS06070 0.81 -1.8
1,366,890 + +1.0
1,366,891 - -1.0
1,366,891 - -1.3

Or see this region's nucleotide sequence