Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05825

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05820 and DDA3937_RS05825 are separated by 487 nucleotidesDDA3937_RS05825 and DDA3937_RS05830 are separated by 294 nucleotides DDA3937_RS05820: DDA3937_RS05820 - hypothetical protein, at 1,303,913 to 1,304,284 _RS05820 DDA3937_RS05825: DDA3937_RS05825 - cache domain-containing protein, at 1,304,772 to 1,306,358 _RS05825 DDA3937_RS05830: DDA3937_RS05830 - glycoside hydrolase family 28 protein, at 1,306,653 to 1,308,026 _RS05830 Position (kb) 1304 1305 1306 1307Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1303.777 kb on + strandat 1303.777 kb on + strandat 1303.778 kb on - strandat 1303.900 kb on - strandat 1303.961 kb on + strand, within DDA3937_RS05820at 1303.985 kb on + strand, within DDA3937_RS05820at 1303.985 kb on + strand, within DDA3937_RS05820at 1303.986 kb on - strand, within DDA3937_RS05820at 1303.986 kb on - strand, within DDA3937_RS05820at 1304.020 kb on - strand, within DDA3937_RS05820at 1304.020 kb on - strandat 1304.166 kb on + strand, within DDA3937_RS05820at 1304.166 kb on + strand, within DDA3937_RS05820at 1304.166 kb on + strand, within DDA3937_RS05820at 1304.166 kb on + strand, within DDA3937_RS05820at 1304.166 kb on + strand, within DDA3937_RS05820at 1304.166 kb on + strandat 1304.166 kb on + strand, within DDA3937_RS05820at 1304.166 kb on + strand, within DDA3937_RS05820at 1304.166 kb on + strand, within DDA3937_RS05820at 1304.166 kb on + strand, within DDA3937_RS05820at 1304.166 kb on + strand, within DDA3937_RS05820at 1304.166 kb on + strand, within DDA3937_RS05820at 1304.167 kb on - strand, within DDA3937_RS05820at 1304.167 kb on - strand, within DDA3937_RS05820at 1304.167 kb on - strand, within DDA3937_RS05820at 1304.167 kb on - strand, within DDA3937_RS05820at 1304.167 kb on - strand, within DDA3937_RS05820at 1304.167 kb on - strand, within DDA3937_RS05820at 1304.248 kb on - strandat 1304.248 kb on - strandat 1304.312 kb on + strandat 1304.313 kb on - strandat 1304.313 kb on - strandat 1304.313 kb on - strandat 1304.317 kb on - strandat 1304.317 kb on - strandat 1304.343 kb on - strandat 1304.356 kb on + strandat 1304.385 kb on - strandat 1304.484 kb on - strandat 1304.484 kb on - strandat 1304.484 kb on - strandat 1304.521 kb on - strandat 1304.521 kb on - strandat 1304.540 kb on + strandat 1304.643 kb on + strandat 1304.657 kb on - strandat 1304.679 kb on + strandat 1304.685 kb on - strandat 1304.685 kb on - strandat 1304.705 kb on + strandat 1304.742 kb on + strandat 1304.748 kb on - strandat 1304.748 kb on - strandat 1304.810 kb on + strandat 1304.811 kb on - strandat 1304.811 kb on - strandat 1304.813 kb on + strandat 1304.814 kb on - strandat 1304.816 kb on + strandat 1304.816 kb on + strandat 1304.817 kb on - strandat 1304.817 kb on - strandat 1304.847 kb on + strandat 1304.899 kb on + strandat 1304.900 kb on - strandat 1304.933 kb on - strand, within DDA3937_RS05825at 1305.005 kb on + strand, within DDA3937_RS05825at 1305.007 kb on + strand, within DDA3937_RS05825at 1305.007 kb on + strand, within DDA3937_RS05825at 1305.008 kb on - strand, within DDA3937_RS05825at 1305.008 kb on - strand, within DDA3937_RS05825at 1305.037 kb on - strand, within DDA3937_RS05825at 1305.046 kb on + strand, within DDA3937_RS05825at 1305.160 kb on + strand, within DDA3937_RS05825at 1305.170 kb on + strand, within DDA3937_RS05825at 1305.171 kb on - strand, within DDA3937_RS05825at 1305.184 kb on - strand, within DDA3937_RS05825at 1305.186 kb on - strand, within DDA3937_RS05825at 1305.186 kb on - strand, within DDA3937_RS05825at 1305.192 kb on + strand, within DDA3937_RS05825at 1305.230 kb on + strand, within DDA3937_RS05825at 1305.240 kb on + strand, within DDA3937_RS05825at 1305.242 kb on + strand, within DDA3937_RS05825at 1305.242 kb on + strand, within DDA3937_RS05825at 1305.243 kb on - strand, within DDA3937_RS05825at 1305.243 kb on - strand, within DDA3937_RS05825at 1305.243 kb on - strand, within DDA3937_RS05825at 1305.243 kb on - strand, within DDA3937_RS05825at 1305.243 kb on - strand, within DDA3937_RS05825at 1305.253 kb on - strand, within DDA3937_RS05825at 1305.276 kb on - strand, within DDA3937_RS05825at 1305.299 kb on + strand, within DDA3937_RS05825at 1305.302 kb on + strand, within DDA3937_RS05825at 1305.319 kb on - strand, within DDA3937_RS05825at 1305.325 kb on + strand, within DDA3937_RS05825at 1305.325 kb on + strand, within DDA3937_RS05825at 1305.353 kb on - strand, within DDA3937_RS05825at 1305.357 kb on - strand, within DDA3937_RS05825at 1305.385 kb on - strand, within DDA3937_RS05825at 1305.385 kb on - strand, within DDA3937_RS05825at 1305.386 kb on + strand, within DDA3937_RS05825at 1305.387 kb on - strandat 1305.398 kb on + strand, within DDA3937_RS05825at 1305.464 kb on + strand, within DDA3937_RS05825at 1305.465 kb on - strand, within DDA3937_RS05825at 1305.564 kb on - strand, within DDA3937_RS05825at 1305.564 kb on - strand, within DDA3937_RS05825at 1305.692 kb on + strand, within DDA3937_RS05825at 1305.693 kb on - strand, within DDA3937_RS05825at 1305.693 kb on - strand, within DDA3937_RS05825at 1305.693 kb on - strand, within DDA3937_RS05825at 1305.722 kb on + strand, within DDA3937_RS05825at 1305.763 kb on + strandat 1305.763 kb on + strand, within DDA3937_RS05825at 1305.764 kb on - strand, within DDA3937_RS05825at 1305.764 kb on - strand, within DDA3937_RS05825at 1305.815 kb on + strand, within DDA3937_RS05825at 1305.816 kb on - strand, within DDA3937_RS05825at 1305.863 kb on + strand, within DDA3937_RS05825at 1305.864 kb on - strand, within DDA3937_RS05825at 1305.864 kb on - strand, within DDA3937_RS05825at 1305.864 kb on - strand, within DDA3937_RS05825at 1305.864 kb on - strand, within DDA3937_RS05825at 1305.864 kb on - strand, within DDA3937_RS05825at 1306.006 kb on + strand, within DDA3937_RS05825at 1306.006 kb on + strand, within DDA3937_RS05825at 1306.007 kb on - strand, within DDA3937_RS05825at 1306.019 kb on - strand, within DDA3937_RS05825at 1306.019 kb on - strand, within DDA3937_RS05825at 1306.019 kb on - strand, within DDA3937_RS05825at 1306.118 kb on + strand, within DDA3937_RS05825at 1306.118 kb on + strand, within DDA3937_RS05825at 1306.166 kb on + strand, within DDA3937_RS05825at 1306.167 kb on - strand, within DDA3937_RS05825at 1306.167 kb on - strand, within DDA3937_RS05825at 1306.170 kb on + strand, within DDA3937_RS05825at 1306.170 kb on + strand, within DDA3937_RS05825at 1306.170 kb on + strand, within DDA3937_RS05825at 1306.170 kb on + strand, within DDA3937_RS05825at 1306.170 kb on + strand, within DDA3937_RS05825at 1306.170 kb on + strand, within DDA3937_RS05825at 1306.170 kb on + strand, within DDA3937_RS05825at 1306.171 kb on - strand, within DDA3937_RS05825at 1306.171 kb on - strand, within DDA3937_RS05825at 1306.171 kb on - strand, within DDA3937_RS05825at 1306.172 kb on + strand, within DDA3937_RS05825at 1306.172 kb on + strand, within DDA3937_RS05825at 1306.173 kb on - strand, within DDA3937_RS05825at 1306.296 kb on + strandat 1306.305 kb on - strandat 1306.322 kb on + strandat 1306.344 kb on - strandat 1306.367 kb on + strandat 1306.367 kb on + strandat 1306.368 kb on - strandat 1306.384 kb on - strandat 1306.419 kb on - strandat 1306.434 kb on + strandat 1306.434 kb on + strandat 1306.435 kb on - strandat 1306.449 kb on + strandat 1306.495 kb on + strandat 1306.496 kb on - strandat 1306.658 kb on + strandat 1306.658 kb on + strandat 1306.658 kb on + strandat 1306.659 kb on - strandat 1306.878 kb on + strand, within DDA3937_RS05830at 1306.878 kb on + strand, within DDA3937_RS05830at 1306.878 kb on + strand, within DDA3937_RS05830at 1306.878 kb on + strand, within DDA3937_RS05830at 1306.879 kb on - strand, within DDA3937_RS05830at 1306.879 kb on - strand, within DDA3937_RS05830at 1306.879 kb on - strand, within DDA3937_RS05830at 1306.969 kb on - strand, within DDA3937_RS05830at 1307.133 kb on - strand, within DDA3937_RS05830at 1307.166 kb on + strand, within DDA3937_RS05830at 1307.276 kb on + strand, within DDA3937_RS05830at 1307.276 kb on + strand, within DDA3937_RS05830at 1307.279 kb on + strand, within DDA3937_RS05830at 1307.279 kb on + strand, within DDA3937_RS05830at 1307.279 kb on + strand, within DDA3937_RS05830at 1307.279 kb on + strand, within DDA3937_RS05830at 1307.279 kb on + strand, within DDA3937_RS05830at 1307.280 kb on - strand, within DDA3937_RS05830at 1307.312 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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1,303,777 + -1.2
1,303,777 + -0.8
1,303,778 - -2.1
1,303,900 - -2.2
1,303,961 + DDA3937_RS05820 0.13 -2.2
1,303,985 + DDA3937_RS05820 0.19 -1.6
1,303,985 + DDA3937_RS05820 0.19 -2.1
1,303,986 - DDA3937_RS05820 0.20 -0.3
1,303,986 - DDA3937_RS05820 0.20 -2.9
1,304,020 - DDA3937_RS05820 0.29 +2.6
1,304,020 - -0.5
1,304,166 + DDA3937_RS05820 0.68 -0.2
1,304,166 + DDA3937_RS05820 0.68 -0.6
1,304,166 + DDA3937_RS05820 0.68 -2.8
1,304,166 + DDA3937_RS05820 0.68 +0.3
1,304,166 + DDA3937_RS05820 0.68 -2.1
1,304,166 + +0.9
1,304,166 + DDA3937_RS05820 0.68 -0.8
1,304,166 + DDA3937_RS05820 0.68 -2.4
1,304,166 + DDA3937_RS05820 0.68 +2.2
1,304,166 + DDA3937_RS05820 0.68 -2.5
1,304,166 + DDA3937_RS05820 0.68 +0.6
1,304,166 + DDA3937_RS05820 0.68 -0.2
1,304,167 - DDA3937_RS05820 0.68 -0.1
1,304,167 - DDA3937_RS05820 0.68 +0.0
1,304,167 - DDA3937_RS05820 0.68 +0.9
1,304,167 - DDA3937_RS05820 0.68 -1.0
1,304,167 - DDA3937_RS05820 0.68 -0.5
1,304,167 - DDA3937_RS05820 0.68 -2.7
1,304,248 - +0.6
1,304,248 - -1.7
1,304,312 + -1.7
1,304,313 - -0.1
1,304,313 - +0.0
1,304,313 - -1.3
1,304,317 - -0.4
1,304,317 - +1.5
1,304,343 - -0.1
1,304,356 + +0.9
1,304,385 - -2.1
1,304,484 - +0.1
1,304,484 - -1.3
1,304,484 - -1.7
1,304,521 - +0.2
1,304,521 - +0.0
1,304,540 + -0.9
1,304,643 + -1.4
1,304,657 - -1.9
1,304,679 + -0.8
1,304,685 - +1.6
1,304,685 - +1.8
1,304,705 + +1.8
1,304,742 + +0.4
1,304,748 - -0.8
1,304,748 - +1.0
1,304,810 + -1.5
1,304,811 - +0.9
1,304,811 - -1.1
1,304,813 + +0.2
1,304,814 - +1.8
1,304,816 + +1.4
1,304,816 + +0.8
1,304,817 - -1.7
1,304,817 - +1.9
1,304,847 + +2.1
1,304,899 + -0.1
1,304,900 - -2.1
1,304,933 - DDA3937_RS05825 0.10 -0.5
1,305,005 + DDA3937_RS05825 0.15 +0.9
1,305,007 + DDA3937_RS05825 0.15 +1.1
1,305,007 + DDA3937_RS05825 0.15 +0.7
1,305,008 - DDA3937_RS05825 0.15 -1.0
1,305,008 - DDA3937_RS05825 0.15 -3.0
1,305,037 - DDA3937_RS05825 0.17 -2.2
1,305,046 + DDA3937_RS05825 0.17 -2.1
1,305,160 + DDA3937_RS05825 0.24 -1.1
1,305,170 + DDA3937_RS05825 0.25 +1.2
1,305,171 - DDA3937_RS05825 0.25 -2.2
1,305,184 - DDA3937_RS05825 0.26 -0.1
1,305,186 - DDA3937_RS05825 0.26 +0.3
1,305,186 - DDA3937_RS05825 0.26 -2.3
1,305,192 + DDA3937_RS05825 0.26 -0.2
1,305,230 + DDA3937_RS05825 0.29 -3.3
1,305,240 + DDA3937_RS05825 0.29 -4.0
1,305,242 + DDA3937_RS05825 0.30 +1.7
1,305,242 + DDA3937_RS05825 0.30 -3.1
1,305,243 - DDA3937_RS05825 0.30 +0.5
1,305,243 - DDA3937_RS05825 0.30 -1.9
1,305,243 - DDA3937_RS05825 0.30 -2.3
1,305,243 - DDA3937_RS05825 0.30 -0.4
1,305,243 - DDA3937_RS05825 0.30 -1.5
1,305,253 - DDA3937_RS05825 0.30 +1.6
1,305,276 - DDA3937_RS05825 0.32 -1.3
1,305,299 + DDA3937_RS05825 0.33 -2.7
1,305,302 + DDA3937_RS05825 0.33 -1.1
1,305,319 - DDA3937_RS05825 0.34 +2.6
1,305,325 + DDA3937_RS05825 0.35 -0.3
1,305,325 + DDA3937_RS05825 0.35 +0.5
1,305,353 - DDA3937_RS05825 0.37 -0.1
1,305,357 - DDA3937_RS05825 0.37 -1.1
1,305,385 - DDA3937_RS05825 0.39 +0.5
1,305,385 - DDA3937_RS05825 0.39 -3.3
1,305,386 + DDA3937_RS05825 0.39 -1.3
1,305,387 - +1.5
1,305,398 + DDA3937_RS05825 0.39 +1.5
1,305,464 + DDA3937_RS05825 0.44 +0.7
1,305,465 - DDA3937_RS05825 0.44 -0.8
1,305,564 - DDA3937_RS05825 0.50 -0.8
1,305,564 - DDA3937_RS05825 0.50 +0.5
1,305,692 + DDA3937_RS05825 0.58 +2.6
1,305,693 - DDA3937_RS05825 0.58 -1.3
1,305,693 - DDA3937_RS05825 0.58 +0.6
1,305,693 - DDA3937_RS05825 0.58 -1.2
1,305,722 + DDA3937_RS05825 0.60 +1.5
1,305,763 + -0.8
1,305,763 + DDA3937_RS05825 0.62 -1.0
1,305,764 - DDA3937_RS05825 0.63 -1.8
1,305,764 - DDA3937_RS05825 0.63 -1.3
1,305,815 + DDA3937_RS05825 0.66 -0.5
1,305,816 - DDA3937_RS05825 0.66 +0.8
1,305,863 + DDA3937_RS05825 0.69 -0.8
1,305,864 - DDA3937_RS05825 0.69 -1.6
1,305,864 - DDA3937_RS05825 0.69 +0.8
1,305,864 - DDA3937_RS05825 0.69 +1.2
1,305,864 - DDA3937_RS05825 0.69 -0.5
1,305,864 - DDA3937_RS05825 0.69 -1.8
1,306,006 + DDA3937_RS05825 0.78 +1.2
1,306,006 + DDA3937_RS05825 0.78 -2.1
1,306,007 - DDA3937_RS05825 0.78 -1.3
1,306,019 - DDA3937_RS05825 0.79 -2.4
1,306,019 - DDA3937_RS05825 0.79 -2.4
1,306,019 - DDA3937_RS05825 0.79 -0.9
1,306,118 + DDA3937_RS05825 0.85 -1.1
1,306,118 + DDA3937_RS05825 0.85 -1.1
1,306,166 + DDA3937_RS05825 0.88 -1.3
1,306,167 - DDA3937_RS05825 0.88 -0.1
1,306,167 - DDA3937_RS05825 0.88 -1.1
1,306,170 + DDA3937_RS05825 0.88 +2.7
1,306,170 + DDA3937_RS05825 0.88 +2.1
1,306,170 + DDA3937_RS05825 0.88 +0.3
1,306,170 + DDA3937_RS05825 0.88 +1.8
1,306,170 + DDA3937_RS05825 0.88 +0.3
1,306,170 + DDA3937_RS05825 0.88 -1.9
1,306,170 + DDA3937_RS05825 0.88 +0.8
1,306,171 - DDA3937_RS05825 0.88 +4.4
1,306,171 - DDA3937_RS05825 0.88 +0.6
1,306,171 - DDA3937_RS05825 0.88 -1.1
1,306,172 + DDA3937_RS05825 0.88 -0.1
1,306,172 + DDA3937_RS05825 0.88 +0.8
1,306,173 - DDA3937_RS05825 0.88 +0.5
1,306,296 + +0.1
1,306,305 - -0.9
1,306,322 + +1.6
1,306,344 - -3.1
1,306,367 + -1.3
1,306,367 + +2.1
1,306,368 - -2.7
1,306,384 - -1.5
1,306,419 - -1.5
1,306,434 + -1.1
1,306,434 + -2.4
1,306,435 - -0.6
1,306,449 + -2.3
1,306,495 + -0.8
1,306,496 - -0.5
1,306,658 + +0.9
1,306,658 + -0.7
1,306,658 + -0.7
1,306,659 - -1.9
1,306,878 + DDA3937_RS05830 0.16 -1.9
1,306,878 + DDA3937_RS05830 0.16 +0.1
1,306,878 + DDA3937_RS05830 0.16 -3.1
1,306,878 + DDA3937_RS05830 0.16 -1.1
1,306,879 - DDA3937_RS05830 0.16 +1.4
1,306,879 - DDA3937_RS05830 0.16 -3.3
1,306,879 - DDA3937_RS05830 0.16 -2.3
1,306,969 - DDA3937_RS05830 0.23 -0.3
1,307,133 - DDA3937_RS05830 0.35 +0.5
1,307,166 + DDA3937_RS05830 0.37 -1.5
1,307,276 + DDA3937_RS05830 0.45 -0.1
1,307,276 + DDA3937_RS05830 0.45 -0.6
1,307,279 + DDA3937_RS05830 0.46 -0.8
1,307,279 + DDA3937_RS05830 0.46 +1.2
1,307,279 + DDA3937_RS05830 0.46 -0.3
1,307,279 + DDA3937_RS05830 0.46 -0.2
1,307,279 + DDA3937_RS05830 0.46 -0.6
1,307,280 - DDA3937_RS05830 0.46 -2.2
1,307,312 + +0.2

Or see this region's nucleotide sequence