Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04840

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,080,275	+		DDA3937_RS04835	0.82	-1.3
1,080,301	+		DDA3937_RS04835	0.82	-1.7
1,080,497	-		DDA3937_RS04835	0.88	-2.1
1,080,497	-		DDA3937_RS04835	0.88	-1.8
1,080,548	-		DDA3937_RS04835	0.89	-0.4
1,080,631	-				+0.7
1,080,631	-				-1.1
1,080,663	+				-2.1
1,080,729	-				-2.2
1,080,757	+				+0.1
1,080,758	-				+1.8
1,080,778	+				+1.0
1,080,818	-				-1.5
1,080,979	+				-3.5
1,081,581	-		DDA3937_RS04840	0.15	-1.5
1,081,697	+		DDA3937_RS04840	0.19	+0.6
1,081,835	-		DDA3937_RS04840	0.22	-3.1
1,081,837	-		DDA3937_RS04840	0.22	-2.7
1,081,900	+		DDA3937_RS04840	0.24	-1.7
1,081,900	+		DDA3937_RS04840	0.24	-1.3
1,081,951	-		DDA3937_RS04840	0.25	-2.2
1,081,973	-		DDA3937_RS04840	0.26	-0.2
1,081,992	-		DDA3937_RS04840	0.26	+0.5
1,082,023	+		DDA3937_RS04840	0.27	-1.9
1,082,103	-		DDA3937_RS04840	0.29	-1.7
1,082,205	-		DDA3937_RS04840	0.32	-1.9
1,082,205	-		DDA3937_RS04840	0.32	-1.7
1,082,207	+		DDA3937_RS04840	0.32	+3.1
1,082,502	+		DDA3937_RS04840	0.40	-0.6
1,082,503	-		DDA3937_RS04840	0.40	-0.1
1,082,557	+		DDA3937_RS04840	0.42	-1.3
1,082,679	+		DDA3937_RS04840	0.45	+0.4
1,082,683	-		DDA3937_RS04840	0.45	+0.7
1,082,760	+		DDA3937_RS04840	0.47	-1.5
1,082,760	+		DDA3937_RS04840	0.47	-2.8
1,082,760	+		DDA3937_RS04840	0.47	-1.6
1,082,761	-		DDA3937_RS04840	0.47	-4.0
1,082,761	-		DDA3937_RS04840	0.47	+0.1
1,082,761	-		DDA3937_RS04840	0.47	-0.9
1,082,764	+		DDA3937_RS04840	0.47	-3.1
1,082,764	+		DDA3937_RS04840	0.47	+3.3
1,082,765	-		DDA3937_RS04840	0.47	+0.8
1,082,791	-		DDA3937_RS04840	0.48	-1.8
1,082,806	+		DDA3937_RS04840	0.48	-2.9
1,082,806	+		DDA3937_RS04840	0.48	-2.6
1,082,827	+		DDA3937_RS04840	0.49	-1.5
1,082,833	+		DDA3937_RS04840	0.49	-0.5
1,082,954	+		DDA3937_RS04840	0.52	-2.5
1,082,954	+		DDA3937_RS04840	0.52	-0.4
1,082,969	-		DDA3937_RS04840	0.53	-0.0
1,082,985	-		DDA3937_RS04840	0.53	-1.1
1,083,023	+		DDA3937_RS04840	0.54	-1.1
1,083,023	+		DDA3937_RS04840	0.54	-1.3
1,083,024	-		DDA3937_RS04840	0.54	-2.9
1,083,024	-		DDA3937_RS04840	0.54	-1.5
1,083,024	-		DDA3937_RS04840	0.54	-1.3
1,083,026	+		DDA3937_RS04840	0.54	+1.9
1,083,026	+		DDA3937_RS04840	0.54	-0.1
1,083,027	-		DDA3937_RS04840	0.54	-0.8
1,083,027	-		DDA3937_RS04840	0.54	-1.3
1,083,113	+		DDA3937_RS04840	0.56	-0.9
1,083,113	+		DDA3937_RS04840	0.56	+0.1
1,083,114	-		DDA3937_RS04840	0.56	+2.2
1,083,114	-		DDA3937_RS04840	0.56	+0.0
1,083,134	+				-0.8
1,083,135	-		DDA3937_RS04840	0.57	-0.7
1,083,161	+		DDA3937_RS04840	0.58	+0.1
1,083,170	+		DDA3937_RS04840	0.58	-1.7
1,083,170	+		DDA3937_RS04840	0.58	+0.5
1,083,171	-		DDA3937_RS04840	0.58	-0.4
1,083,171	-		DDA3937_RS04840	0.58	-0.1
1,083,171	-		DDA3937_RS04840	0.58	-3.3
1,083,171	-		DDA3937_RS04840	0.58	+2.9
1,083,171	-		DDA3937_RS04840	0.58	-1.5
1,083,173	+		DDA3937_RS04840	0.58	-1.7
1,083,173	+		DDA3937_RS04840	0.58	-0.7
1,083,173	+		DDA3937_RS04840	0.58	-1.8
1,083,173	+		DDA3937_RS04840	0.58	+0.0
1,083,173	+		DDA3937_RS04840	0.58	-2.8
1,083,173	+		DDA3937_RS04840	0.58	-0.8
1,083,173	+		DDA3937_RS04840	0.58	+0.5
1,083,173	+		DDA3937_RS04840	0.58	+0.6
1,083,174	-		DDA3937_RS04840	0.58	-0.7
1,083,174	-		DDA3937_RS04840	0.58	+1.1
1,083,174	-		DDA3937_RS04840	0.58	-1.1
1,083,174	-		DDA3937_RS04840	0.58	+0.8
1,083,174	-		DDA3937_RS04840	0.58	+0.7
1,083,174	-		DDA3937_RS04840	0.58	-1.9
1,083,265	+		DDA3937_RS04840	0.60	-1.7
1,083,266	-		DDA3937_RS04840	0.60	-0.9
1,083,266	-		DDA3937_RS04840	0.60	-1.3
1,083,288	+		DDA3937_RS04840	0.61	+0.1
1,083,364	+		DDA3937_RS04840	0.63	-1.9
1,083,364	+		DDA3937_RS04840	0.63	-1.7
1,083,364	+		DDA3937_RS04840	0.63	-3.4
1,083,364	+		DDA3937_RS04840	0.63	-3.9
1,083,364	+		DDA3937_RS04840	0.63	+1.4
1,083,364	+		DDA3937_RS04840	0.63	+0.4
1,083,364	+		DDA3937_RS04840	0.63	-1.6
1,083,364	+		DDA3937_RS04840	0.63	-0.4
1,083,365	-		DDA3937_RS04840	0.63	-0.8
1,083,365	-		DDA3937_RS04840	0.63	-1.5
1,083,365	-		DDA3937_RS04840	0.63	-1.1
1,083,365	-		DDA3937_RS04840	0.63	+0.3
1,083,415	+		DDA3937_RS04840	0.64	-0.4
1,083,416	-		DDA3937_RS04840	0.64	+0.5
1,083,431	+		DDA3937_RS04840	0.65	-2.2
1,083,486	+		DDA3937_RS04840	0.66	-2.3
1,083,492	-		DDA3937_RS04840	0.66	+2.3
1,083,492	-		DDA3937_RS04840	0.66	+0.3
1,083,518	+		DDA3937_RS04840	0.67	-1.3
1,083,519	-		DDA3937_RS04840	0.67	-1.1
1,083,519	-		DDA3937_RS04840	0.67	+2.6
1,083,560	+		DDA3937_RS04840	0.68	-1.1
1,083,561	-		DDA3937_RS04840	0.68	-0.5
1,083,561	-		DDA3937_RS04840	0.68	+0.3
1,083,608	-		DDA3937_RS04840	0.70	-1.5
1,083,622	-		DDA3937_RS04840	0.70	+0.2
1,083,622	-		DDA3937_RS04840	0.70	+0.4
1,083,704	+		DDA3937_RS04840	0.72	-1.2
1,083,737	-		DDA3937_RS04840	0.73	-3.1
1,083,859	+		DDA3937_RS04840	0.76	+0.7
1,083,859	+		DDA3937_RS04840	0.76	-0.8
1,083,859	+		DDA3937_RS04840	0.76	-0.1
1,083,860	-		DDA3937_RS04840	0.76	+1.3
1,083,958	+		DDA3937_RS04840	0.79	-0.1
1,083,970	+		DDA3937_RS04840	0.79	+1.1
1,084,000	+		DDA3937_RS04840	0.80	+0.4
1,084,027	+		DDA3937_RS04840	0.81	-1.1
1,084,031	+		DDA3937_RS04840	0.81	-3.9
1,084,031	+		DDA3937_RS04840	0.81	-0.3
1,084,032	-		DDA3937_RS04840	0.81	+1.1
1,084,034	-		DDA3937_RS04840	0.81	-1.1
1,084,044	-		DDA3937_RS04840	0.81	+0.1
1,084,064	+		DDA3937_RS04840	0.82	-0.4
1,084,064	+		DDA3937_RS04840	0.82	-0.8
1,084,121	-		DDA3937_RS04840	0.83	-1.5
1,084,301	+		DDA3937_RS04840	0.88	-1.3
1,084,302	-		DDA3937_RS04840	0.88	-0.8
1,084,354	-		DDA3937_RS04840	0.89	+1.9
1,084,504	+				+2.5
1,084,507	+				-0.5
1,084,508	-				-1.7
1,084,565	-				+0.2
1,084,588	+				-0.7
1,084,588	+				-0.1
1,084,589	-				+0.3
1,084,630	+				-1.5
1,084,643	+				+1.7
1,084,643	+				-0.8
1,084,747	+				-3.2
1,084,781	-				-0.5
1,084,785	+				-2.3
1,084,824	-				-0.5
1,084,855	-				-1.9
1,084,862	+				-4.1
1,084,885	+				-0.9
1,084,887	+				-1.1
1,085,037	+		DDA3937_RS04845	0.53	+1.1
1,085,038	-		DDA3937_RS04845	0.53	+0.5
1,085,038	-		DDA3937_RS04845	0.53	-2.7
1,085,038	-		DDA3937_RS04845	0.53	+1.7
1,085,038	-		DDA3937_RS04845	0.53	+0.3
1,085,038	-		DDA3937_RS04845	0.53	+2.1
1,085,098	-		DDA3937_RS04845	0.76	-1.5
1,085,103	+		DDA3937_RS04845	0.78	-0.5
1,085,104	-		DDA3937_RS04845	0.78	-0.1
1,085,104	-		DDA3937_RS04845	0.78	+0.1
1,085,118	+		DDA3937_RS04845	0.83	+1.8
1,085,131	-		DDA3937_RS04845	0.88	-2.4
1,085,177	+				-1.2
1,085,184	-				-1.9
1,085,184	-				-0.9
1,085,199	-				-2.1
1,085,209	+				+3.2
1,085,210	-				-2.9
1,085,210	-				-0.6
1,085,210	-				-1.3
1,085,291	+				-2.3
1,085,291	+				-1.9
1,085,291	+				-0.1
1,085,292	-		DDA3937_RS21960	0.10	+1.5
1,085,292	-		DDA3937_RS21960	0.10	+1.8
1,085,334	-		DDA3937_RS21960	0.26	+1.4
1,085,334	-		DDA3937_RS21960	0.26	+1.3
1,085,339	+				+0.5
1,085,340	-		DDA3937_RS21960	0.28	-1.6
1,085,340	-		DDA3937_RS21960	0.28	-1.5
1,085,340	-		DDA3937_RS21960	0.28	+3.5
1,085,355	+		DDA3937_RS21960	0.34	+0.8
1,085,356	-		DDA3937_RS21960	0.34	+2.2
1,085,356	-		DDA3937_RS21960	0.34	+2.2
1,085,401	+		DDA3937_RS21960	0.52	-0.7
1,085,401	+		DDA3937_RS21960	0.52	+1.9
1,085,401	+		DDA3937_RS21960	0.52	+0.5
1,085,401	+		DDA3937_RS21960	0.52	-2.4
1,085,402	-		DDA3937_RS21960	0.52	+1.5
1,085,414	+		DDA3937_RS21960	0.57	-0.1
1,085,415	-		DDA3937_RS21960	0.57	+0.8
1,085,415	-		DDA3937_RS21960	0.57	+1.4
1,085,495	-		DDA3937_RS21960	0.88	+0.5
1,085,531	+				+1.1
1,085,531	+				-0.6
1,085,531	+				+1.0
1,085,532	-				+0.2
1,085,548	+				-1.2
1,085,548	+				+2.5
1,085,548	+				+2.4
1,085,548	+				+1.2
1,085,548	+				-1.8
1,085,549	-				-1.7
1,085,549	-				-4.3
1,085,549	-				-0.8
1,085,549	-				-3.7
1,085,615	+				+1.9
1,085,616	-				+1.1
1,085,616	-				+1.3
1,085,616	-				-1.4
1,085,626	+				-1.9
1,085,655	+				-1.4
1,085,655	+				-0.8
1,085,655	+				-0.8
1,085,676	+		DDA3937_RS21965	0.13	+0.5
1,085,676	+		DDA3937_RS21965	0.13	-2.3