Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04785

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,065,220	-		DDA3937_RS04775	0.87	+1.5
1,065,220	-		DDA3937_RS04775	0.87	-1.3
1,065,220	-		DDA3937_RS04775	0.87	+1.5
1,065,240	+		DDA3937_RS04775	0.89	-1.3
1,065,244	-		DDA3937_RS04775	0.89	-0.7
1,065,244	-		DDA3937_RS04775	0.89	-1.1
1,065,244	-		DDA3937_RS04775	0.89	-1.9
1,065,258	+				-2.1
1,065,258	+				+0.4
1,065,306	+				-0.1
1,065,306	+				+1.3
1,065,306	+				-0.8
1,065,306	+				+0.3
1,065,306	+				-0.5
1,065,306	+				+0.2
1,065,307	-				+1.5
1,065,307	-				+0.1
1,065,307	-				-1.1
1,065,310	-				-3.4
1,065,310	-				+1.7
1,065,310	-				-1.1
1,065,337	+				-1.5
1,065,338	-				-1.2
1,065,338	-				+2.1
1,065,341	+				-1.2
1,065,341	+				-0.5
1,065,341	+				-0.5
1,065,342	-				-2.6
1,065,396	+				+2.4
1,065,396	+				-2.3
1,065,403	+				+1.2
1,065,403	+				-2.6
1,065,404	-				-0.1
1,065,404	-				+0.6
1,065,412	+				-0.7
1,065,421	+				-1.9
1,065,421	+				+0.7
1,065,421	+				-1.8
1,065,421	+				+2.2
1,065,422	-				+0.3
1,065,422	-				-0.1
1,065,422	-				+0.9
1,065,423	+				+0.3
1,065,423	+				+0.6
1,065,424	-				-1.5
1,065,482	+				+0.8
1,065,482	+				+0.5
1,065,482	+				+0.2
1,065,482	+				+1.7
1,065,483	-				+1.9
1,065,483	-				-0.2
1,065,487	+				+0.5
1,065,487	+				-0.2
1,065,502	-				-1.0
1,065,536	+				-2.8
1,065,536	+				+0.9
1,065,547	+				+0.5
1,065,547	+				-1.5
1,065,547	+				-2.1
1,065,548	-				-1.5
1,065,548	-				+2.3
1,065,548	-				+0.4
1,065,548	-				-0.9
1,065,551	+				+0.3
1,065,551	+				+0.7
1,065,551	+				-0.1
1,065,551	+				+2.2
1,065,551	+				+0.1
1,065,552	-				-1.1
1,065,581	+				-0.1
1,065,582	-				-0.1
1,065,615	+		DDA3937_RS04780	0.13	-0.5
1,065,616	-		DDA3937_RS04780	0.14	-0.5
1,065,618	+		DDA3937_RS04780	0.14	-0.1
1,065,619	-		DDA3937_RS04780	0.14	-1.0
1,065,752	-		DDA3937_RS04780	0.42	-0.1
1,065,752	-		DDA3937_RS04780	0.42	-3.1
1,065,791	+		DDA3937_RS04780	0.50	-2.6
1,065,792	-		DDA3937_RS04780	0.51	-3.1
1,065,845	+		DDA3937_RS04780	0.62	-3.1
1,065,845	+		DDA3937_RS04780	0.62	-1.3
1,065,845	+		DDA3937_RS04780	0.62	-1.2
1,065,846	-		DDA3937_RS04780	0.62	-1.1
1,065,846	-		DDA3937_RS04780	0.62	-1.5
1,065,846	-		DDA3937_RS04780	0.62	-1.9
1,065,891	+		DDA3937_RS04780	0.72	+0.0
1,065,892	-		DDA3937_RS04780	0.72	-2.2
1,065,892	-		DDA3937_RS04780	0.72	+1.1
1,065,915	+		DDA3937_RS04780	0.77	-0.1
1,065,916	-		DDA3937_RS04780	0.77	-1.3
1,065,917	+		DDA3937_RS04780	0.77	-2.5
1,065,918	-		DDA3937_RS04780	0.77	-2.2
1,065,948	+		DDA3937_RS04780	0.84	-0.9
1,065,948	+		DDA3937_RS04780	0.84	-0.6
1,065,948	+		DDA3937_RS04780	0.84	+2.2
1,065,948	+		DDA3937_RS04780	0.84	-0.5
1,065,948	+		DDA3937_RS04780	0.84	-1.9
1,065,948	+		DDA3937_RS04780	0.84	-2.2
1,065,948	+		DDA3937_RS04780	0.84	+0.7
1,065,949	-		DDA3937_RS04780	0.84	-0.4
1,065,949	-		DDA3937_RS04780	0.84	+0.5
1,065,949	-		DDA3937_RS04780	0.84	-0.2
1,065,949	-		DDA3937_RS04780	0.84	+0.9
1,065,949	-		DDA3937_RS04780	0.84	-1.5
1,065,949	-		DDA3937_RS04780	0.84	-1.1
1,066,050	-				-1.3
1,066,069	+				-1.5
1,066,070	-				+0.5
1,066,077	+				-2.3
1,066,078	-				-1.3
1,066,078	-				-2.6
1,066,078	-				-0.4
1,066,078	-				-0.2
1,066,096	-				-0.7
1,066,169	+				-1.9
1,066,330	+		DDA3937_RS04785	0.16	-1.6
1,066,503	+		DDA3937_RS04785	0.39	+2.3
1,066,503	+		DDA3937_RS04785	0.39	+0.1
1,066,504	-		DDA3937_RS04785	0.40	+1.8
1,066,540	+		DDA3937_RS04785	0.44	-1.6
1,066,545	+		DDA3937_RS04785	0.45	+0.3
1,066,545	+		DDA3937_RS04785	0.45	+1.1
1,066,546	-		DDA3937_RS04785	0.45	+0.2
1,066,546	-		DDA3937_RS04785	0.45	-2.2
1,066,805	-		DDA3937_RS04785	0.81	-1.1
1,066,928	+				-1.1
1,066,936	+				-1.3
1,066,937	-				-0.1
1,066,937	-				+0.7
1,066,941	-				-1.5
1,066,953	-				-0.6
1,067,024	-				-1.9
1,067,024	-				-0.9
1,067,024	-				-2.4
1,067,238	+		DDA3937_RS04790	0.36	+1.1
1,067,239	-				+2.7
1,067,250	+		DDA3937_RS04790	0.39	-3.0
1,067,250	+		DDA3937_RS04790	0.39	-0.3
1,067,265	+		DDA3937_RS04790	0.43	+2.1
1,067,335	-		DDA3937_RS04790	0.60	+2.3
1,067,360	+		DDA3937_RS04790	0.66	+0.0
1,067,412	-		DDA3937_RS04790	0.79	-0.1
1,067,412	-		DDA3937_RS04790	0.79	+0.2
1,067,415	+		DDA3937_RS04790	0.79	-2.4
1,067,415	+		DDA3937_RS04790	0.79	+0.1
1,067,416	-		DDA3937_RS04790	0.80	-0.1
1,067,416	-				+0.5
1,067,416	-		DDA3937_RS04790	0.80	+1.5
1,067,416	-		DDA3937_RS04790	0.80	-0.7
1,067,416	-		DDA3937_RS04790	0.80	-0.8
1,067,429	-		DDA3937_RS04790	0.83	-1.9
1,067,435	+		DDA3937_RS04790	0.84	+1.5
1,067,442	-		DDA3937_RS04790	0.86	-0.5
1,067,442	-		DDA3937_RS04790	0.86	-2.0
1,067,475	+				-1.9
1,067,476	-				-3.0
1,067,476	-				-1.8
1,067,476	-				-0.1
1,067,477	+				+0.2
1,067,478	-				+1.2
1,067,478	-				-1.0
1,067,478	-				-0.5
1,067,496	+				-0.1
1,067,497	-				-1.9
1,067,497	-				-2.7
1,067,497	-				-1.9
1,067,547	+				+0.0
1,067,728	+				-0.2
1,067,728	+				-1.1
1,067,729	-				-1.2
1,067,729	-				-3.0
1,067,737	+				-0.1
1,067,760	+				-2.1
1,067,760	+				-1.5
1,067,760	+				-0.1
1,067,761	-				+0.2
1,067,761	-				-1.6
1,067,854	-				+1.2
1,067,854	-				+0.5