Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04700

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,034,622	+		DDA3937_RS04695	0.13	+0.2
1,034,623	-		DDA3937_RS04695	0.13	-0.5
1,034,641	+		DDA3937_RS04695	0.16	+0.2
1,034,641	+		DDA3937_RS04695	0.16	+0.5
1,034,641	+		DDA3937_RS04695	0.16	-1.6
1,034,641	+		DDA3937_RS04695	0.16	-1.4
1,034,641	+				-0.1
1,034,641	+		DDA3937_RS04695	0.16	+0.8
1,034,642	-		DDA3937_RS04695	0.16	+0.4
1,034,642	-		DDA3937_RS04695	0.16	-1.6
1,034,642	-		DDA3937_RS04695	0.16	+1.9
1,034,642	-		DDA3937_RS04695	0.16	-0.3
1,034,642	-		DDA3937_RS04695	0.16	+1.8
1,034,642	-		DDA3937_RS04695	0.16	-2.3
1,034,741	-		DDA3937_RS04695	0.29	+0.6
1,034,741	-				+1.5
1,034,741	-		DDA3937_RS04695	0.29	+1.5
1,034,741	-		DDA3937_RS04695	0.29	-2.0
1,035,041	-		DDA3937_RS04695	0.71	+0.7
1,035,041	-		DDA3937_RS04695	0.71	-1.9
1,035,084	-		DDA3937_RS04695	0.77	+2.6
1,035,247	+				-0.1
1,035,247	+				-1.1
1,035,248	-				-0.1
1,035,296	+				-1.6
1,035,296	+				-0.2
1,035,297	-				-0.8
1,035,297	-				-0.1
1,035,307	+				+0.0
1,035,315	+				-0.4
1,035,417	+				-2.9
1,035,418	-				+0.2
1,035,480	+				+0.3
1,035,481	-				+0.9
1,035,513	-				-1.3
1,035,515	+				+1.1
1,035,515	+				+1.3
1,035,548	+				+4.3
1,035,548	+				-2.7
1,035,548	+				-0.8
1,035,548	+				-3.1
1,035,548	+				-0.8
1,035,548	+				+1.3
1,035,548	+				-0.5
1,035,548	+				-0.0
1,035,548	+				+1.1
1,035,549	-				+1.7
1,035,549	-				-3.4
1,035,549	-				-0.1
1,035,549	-				+0.1
1,035,585	-				+0.4
1,035,603	+				-0.5
1,035,604	-				-0.0
1,035,610	+				+1.4
1,035,610	+				+2.3
1,035,610	+				-2.6
1,035,610	+				-0.2
1,035,611	-				+1.1
1,035,611	-				+1.9
1,035,742	+		DDA3937_RS04700	0.25	+1.8
1,035,743	-		DDA3937_RS04700	0.25	-0.2
1,035,752	+		DDA3937_RS04700	0.27	-0.8
1,035,764	+		DDA3937_RS04700	0.28	-0.8
1,035,764	+		DDA3937_RS04700	0.28	-0.7
1,035,764	+		DDA3937_RS04700	0.28	-0.5
1,035,764	+		DDA3937_RS04700	0.28	-1.5
1,035,764	+		DDA3937_RS04700	0.28	-0.5
1,035,764	+		DDA3937_RS04700	0.28	+0.7
1,035,765	-		DDA3937_RS04700	0.28	-0.8
1,035,765	-		DDA3937_RS04700	0.28	-0.5
1,035,765	-		DDA3937_RS04700	0.28	-3.6
1,035,857	-				+1.5
1,035,964	+		DDA3937_RS04700	0.52	-1.0
1,035,965	-		DDA3937_RS04700	0.52	-0.0
1,036,045	+		DDA3937_RS04700	0.62	-0.3
1,036,046	-		DDA3937_RS04700	0.62	-0.5
1,036,057	+				-0.5
1,036,058	-		DDA3937_RS04700	0.64	-1.5
1,036,136	+		DDA3937_RS04700	0.73	-0.8
1,036,136	+		DDA3937_RS04700	0.73	-2.4
1,036,136	+		DDA3937_RS04700	0.73	+0.6
1,036,136	+		DDA3937_RS04700	0.73	-0.9
1,036,137	-		DDA3937_RS04700	0.73	+1.1
1,036,137	-		DDA3937_RS04700	0.73	+1.7
1,036,137	-		DDA3937_RS04700	0.73	+0.8
1,036,166	+		DDA3937_RS04700	0.77	-1.1
1,036,166	+		DDA3937_RS04700	0.77	+0.0
1,036,166	+		DDA3937_RS04700	0.77	-2.3
1,036,166	+		DDA3937_RS04700	0.77	-1.5
1,036,166	+		DDA3937_RS04700	0.77	-1.5
1,036,167	-		DDA3937_RS04700	0.77	+1.2
1,036,167	-		DDA3937_RS04700	0.77	-0.5
1,036,167	-		DDA3937_RS04700	0.77	-1.9
1,036,167	-		DDA3937_RS04700	0.77	-0.3
1,036,167	-		DDA3937_RS04700	0.77	+0.4
1,036,167	-		DDA3937_RS04700	0.77	+0.3
1,036,295	+				-0.3
1,036,295	+				-2.0
1,036,295	+				+1.3
1,036,295	+				-1.6
1,036,296	-				+4.0
1,036,296	-				-2.9
1,036,296	-				-1.6
1,036,296	-				-0.1
1,036,296	-				+0.8
1,036,296	-				-1.3
1,036,373	+				-1.5
1,036,505	+				-1.9
1,036,606	+				-1.8
1,036,621	-				+3.5
1,036,651	-				-1.6
1,036,687	+				-1.4
1,036,687	+				+0.2
1,036,688	-				-1.5
1,036,692	-				-0.3
1,036,692	-				-0.7
1,036,719	-				-1.1
1,036,745	-				+2.0
1,036,745	-				+0.7
1,036,813	+				-2.3
1,036,813	+				-1.9
1,036,813	+				-2.7
1,036,813	+				-0.3
1,036,900	+		DDA3937_RS04705	0.14	+1.4
1,036,901	-		DDA3937_RS04705	0.14	-1.8
1,036,901	-		DDA3937_RS04705	0.14	-3.0
1,036,945	+		DDA3937_RS04705	0.18	-0.7
1,036,946	-		DDA3937_RS04705	0.18	-1.3
1,036,987	+		DDA3937_RS04705	0.22	-1.3
1,036,988	-		DDA3937_RS04705	0.22	-0.5
1,036,988	-		DDA3937_RS04705	0.22	-1.3
1,037,002	+		DDA3937_RS04705	0.23	-2.6
1,037,003	-		DDA3937_RS04705	0.23	+1.9
1,037,093	+		DDA3937_RS04705	0.32	-1.6
1,037,093	+		DDA3937_RS04705	0.32	+0.0
1,037,093	+		DDA3937_RS04705	0.32	+0.9
1,037,094	-		DDA3937_RS04705	0.32	-0.8
1,037,094	-		DDA3937_RS04705	0.32	-0.5
1,037,098	+		DDA3937_RS04705	0.32	-1.8
1,037,098	+		DDA3937_RS04705	0.32	-2.1
1,037,098	+		DDA3937_RS04705	0.32	-3.5
1,037,098	+		DDA3937_RS04705	0.32	+0.1
1,037,098	+				-0.1
1,037,098	+		DDA3937_RS04705	0.32	-1.3
1,037,098	+		DDA3937_RS04705	0.32	+1.2
1,037,098	+		DDA3937_RS04705	0.32	-1.3
1,037,098	+		DDA3937_RS04705	0.32	+0.6
1,037,098	+		DDA3937_RS04705	0.32	-1.4
1,037,098	+		DDA3937_RS04705	0.32	-3.1
1,037,099	-		DDA3937_RS04705	0.32	-2.5
1,037,099	-		DDA3937_RS04705	0.32	-1.9
1,037,099	-		DDA3937_RS04705	0.32	-0.8
1,037,099	-		DDA3937_RS04705	0.32	-1.1
1,037,099	-		DDA3937_RS04705	0.32	+0.4
1,037,099	-		DDA3937_RS04705	0.32	+0.7
1,037,099	-		DDA3937_RS04705	0.32	-0.1
1,037,099	-		DDA3937_RS04705	0.32	-2.9
1,037,099	-		DDA3937_RS04705	0.32	-2.2
1,037,102	+		DDA3937_RS04705	0.32	+0.4
1,037,102	+		DDA3937_RS04705	0.32	-0.1
1,037,102	+		DDA3937_RS04705	0.32	-0.3
1,037,102	+		DDA3937_RS04705	0.32	-1.5
1,037,102	+		DDA3937_RS04705	0.32	-2.1
1,037,102	+		DDA3937_RS04705	0.32	-3.8
1,037,102	+		DDA3937_RS04705	0.32	-1.9
1,037,103	-		DDA3937_RS04705	0.32	-1.3
1,037,103	-		DDA3937_RS04705	0.32	-0.7
1,037,103	-		DDA3937_RS04705	0.32	-1.3
1,037,103	-		DDA3937_RS04705	0.32	-1.6
1,037,103	-		DDA3937_RS04705	0.32	-0.2
1,037,103	-		DDA3937_RS04705	0.32	-3.3
1,037,103	-		DDA3937_RS04705	0.32	+3.0
1,037,180	+		DDA3937_RS04705	0.39	+0.1
1,037,236	+		DDA3937_RS04705	0.44	-1.9
1,037,236	+		DDA3937_RS04705	0.44	-0.9
1,037,236	+		DDA3937_RS04705	0.44	+0.1
1,037,236	+		DDA3937_RS04705	0.44	-1.8
1,037,237	-		DDA3937_RS04705	0.45	+2.9
1,037,237	-		DDA3937_RS04705	0.45	-2.9
1,037,255	+		DDA3937_RS04705	0.46	-1.5
1,037,255	+		DDA3937_RS04705	0.46	+1.2
1,037,255	+		DDA3937_RS04705	0.46	-0.2
1,037,255	+		DDA3937_RS04705	0.46	-1.8
1,037,255	+		DDA3937_RS04705	0.46	-1.9