Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04340 and DDA3937_RS04345 are separated by 158 nucleotides DDA3937_RS04345 and DDA3937_RS04350 are separated by 80 nucleotides
DDA3937_RS04340: DDA3937_RS04340 - Nramp family divalent metal transporter, at 953,342 to 954,577
_RS04340
DDA3937_RS04345: DDA3937_RS04345 - GDP-mannose pyrophosphatase NudK, at 954,736 to 955,320
_RS04345
DDA3937_RS04350: DDA3937_RS04350 - transaldolase, at 955,401 to 956,351
_RS04350
Position (kb) 954
955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 953.843 kb on + strand, within DDA3937_RS04340 at 953.843 kb on + strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.962 kb on + strand, within DDA3937_RS04340 at 953.962 kb on + strand, within DDA3937_RS04340 at 953.962 kb on + strand, within DDA3937_RS04340 at 953.963 kb on - strand, within DDA3937_RS04340 at 953.963 kb on - strand, within DDA3937_RS04340 at 953.963 kb on - strand, within DDA3937_RS04340 at 953.963 kb on - strand, within DDA3937_RS04340 at 953.965 kb on + strand, within DDA3937_RS04340 at 953.966 kb on - strand, within DDA3937_RS04340 at 953.966 kb on - strand, within DDA3937_RS04340 at 953.981 kb on + strand, within DDA3937_RS04340 at 953.981 kb on + strand, within DDA3937_RS04340 at 953.981 kb on + strand, within DDA3937_RS04340 at 953.982 kb on - strand, within DDA3937_RS04340 at 954.036 kb on - strand, within DDA3937_RS04340 at 954.046 kb on + strand, within DDA3937_RS04340 at 954.168 kb on - strand, within DDA3937_RS04340 at 954.168 kb on - strand, within DDA3937_RS04340 at 954.304 kb on + strand, within DDA3937_RS04340 at 954.393 kb on + strand, within DDA3937_RS04340 at 954.393 kb on + strand, within DDA3937_RS04340 at 954.394 kb on - strand, within DDA3937_RS04340 at 954.505 kb on + strand at 954.505 kb on + strand at 954.505 kb on + strand at 954.511 kb on + strand at 954.512 kb on - strand at 954.526 kb on + strand at 954.527 kb on - strand at 954.527 kb on - strand at 954.527 kb on - strand at 954.548 kb on + strand at 954.664 kb on + strand at 954.665 kb on - strand at 954.697 kb on - strand at 954.697 kb on - strand at 954.697 kb on - strand at 954.697 kb on - strand at 954.699 kb on + strand at 954.699 kb on + strand at 954.700 kb on - strand at 954.722 kb on - strand at 954.750 kb on + strand at 954.751 kb on - strand at 954.753 kb on + strand at 954.754 kb on - strand at 954.798 kb on + strand, within DDA3937_RS04345 at 954.799 kb on - strand, within DDA3937_RS04345 at 954.799 kb on - strand, within DDA3937_RS04345 at 954.799 kb on - strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.893 kb on - strand, within DDA3937_RS04345 at 954.917 kb on + strand, within DDA3937_RS04345 at 954.918 kb on - strand, within DDA3937_RS04345 at 954.947 kb on - strand, within DDA3937_RS04345 at 955.029 kb on + strand, within DDA3937_RS04345 at 955.062 kb on - strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.159 kb on - strand, within DDA3937_RS04345 at 955.192 kb on - strand, within DDA3937_RS04345 at 955.249 kb on - strand, within DDA3937_RS04345 at 955.260 kb on + strand, within DDA3937_RS04345 at 955.260 kb on + strand, within DDA3937_RS04345 at 955.261 kb on - strand, within DDA3937_RS04345 at 955.329 kb on - strand at 955.340 kb on + strand at 955.341 kb on - strand at 955.346 kb on + strand at 955.346 kb on + strand at 955.403 kb on - strand at 955.403 kb on - strand at 955.403 kb on - strand at 955.403 kb on - strand at 955.499 kb on + strand, within DDA3937_RS04350 at 955.499 kb on + strand, within DDA3937_RS04350 at 955.499 kb on + strand, within DDA3937_RS04350 at 955.500 kb on - strand, within DDA3937_RS04350 at 955.500 kb on - strand, within DDA3937_RS04350 at 955.500 kb on - strand, within DDA3937_RS04350 at 955.717 kb on + strand, within DDA3937_RS04350 at 955.718 kb on - strand, within DDA3937_RS04350 at 955.718 kb on - strand, within DDA3937_RS04350 at 955.718 kb on - strand, within DDA3937_RS04350 at 955.721 kb on - strand, within DDA3937_RS04350 at 955.721 kb on - strand, within DDA3937_RS04350 at 955.726 kb on + strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.730 kb on + strand, within DDA3937_RS04350 at 955.798 kb on + strand, within DDA3937_RS04350 at 955.807 kb on + strand, within DDA3937_RS04350 at 955.808 kb on - strand, within DDA3937_RS04350 at 955.808 kb on - strand, within DDA3937_RS04350 at 955.837 kb on + strand, within DDA3937_RS04350 at 955.837 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.984 kb on - strand, within DDA3937_RS04350 at 955.984 kb on - strand, within DDA3937_RS04350 at 956.000 kb on - strand, within DDA3937_RS04350 at 956.000 kb on - strand at 956.000 kb on - strand, within DDA3937_RS04350 at 956.024 kb on + strand at 956.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 953,843 + DDA3937_RS04340 0.41 -2.9 953,843 + DDA3937_RS04340 0.41 -1.8 953,844 - DDA3937_RS04340 0.41 -1.5 953,844 - DDA3937_RS04340 0.41 -1.5 953,844 - DDA3937_RS04340 0.41 -1.6 953,844 - DDA3937_RS04340 0.41 -2.3 953,844 - DDA3937_RS04340 0.41 +0.0 953,962 + DDA3937_RS04340 0.50 -0.2 953,962 + DDA3937_RS04340 0.50 -0.4 953,962 + DDA3937_RS04340 0.50 -0.2 953,963 - DDA3937_RS04340 0.50 -2.7 953,963 - DDA3937_RS04340 0.50 -0.7 953,963 - DDA3937_RS04340 0.50 -3.2 953,963 - DDA3937_RS04340 0.50 -1.2 953,965 + DDA3937_RS04340 0.50 -1.2 953,966 - DDA3937_RS04340 0.50 -2.8 953,966 - DDA3937_RS04340 0.50 -0.7 953,981 + DDA3937_RS04340 0.52 -1.6 953,981 + DDA3937_RS04340 0.52 -2.0 953,981 + DDA3937_RS04340 0.52 +0.8 953,982 - DDA3937_RS04340 0.52 -0.9 954,036 - DDA3937_RS04340 0.56 -0.7 954,046 + DDA3937_RS04340 0.57 -1.9 954,168 - DDA3937_RS04340 0.67 +0.7 954,168 - DDA3937_RS04340 0.67 -2.0 954,304 + DDA3937_RS04340 0.78 -0.2 954,393 + DDA3937_RS04340 0.85 -2.0 954,393 + DDA3937_RS04340 0.85 +2.0 954,394 - DDA3937_RS04340 0.85 -2.6 954,505 + -2.5 954,505 + -0.4 954,505 + -2.2 954,511 + -2.2 954,512 - -1.9 954,526 + -1.0 954,527 - -3.0 954,527 - -0.4 954,527 - -2.1 954,548 + -0.0 954,664 + +0.1 954,665 - -0.2 954,697 - -0.6 954,697 - -1.2 954,697 - +0.4 954,697 - -0.2 954,699 + +0.0 954,699 + -0.4 954,700 - +0.2 954,722 - +1.2 954,750 + -0.7 954,751 - -1.5 954,753 + -0.3 954,754 - +0.6 954,798 + DDA3937_RS04345 0.11 -1.6 954,799 - DDA3937_RS04345 0.11 -0.5 954,799 - DDA3937_RS04345 0.11 -0.8 954,799 - DDA3937_RS04345 0.11 -1.1 954,802 + DDA3937_RS04345 0.11 +2.9 954,802 + DDA3937_RS04345 0.11 +0.9 954,802 + DDA3937_RS04345 0.11 -1.0 954,802 + DDA3937_RS04345 0.11 -2.0 954,802 + DDA3937_RS04345 0.11 -2.7 954,802 + DDA3937_RS04345 0.11 -0.0 954,802 + DDA3937_RS04345 0.11 -1.4 954,802 + DDA3937_RS04345 0.11 -0.8 954,802 + DDA3937_RS04345 0.11 +1.6 954,802 + DDA3937_RS04345 0.11 -0.2 954,803 - DDA3937_RS04345 0.11 -0.2 954,803 - DDA3937_RS04345 0.11 +0.2 954,803 - DDA3937_RS04345 0.11 +2.2 954,803 - DDA3937_RS04345 0.11 -0.5 954,803 - DDA3937_RS04345 0.11 -0.2 954,803 - DDA3937_RS04345 0.11 -2.9 954,803 - DDA3937_RS04345 0.11 -1.8 954,859 + DDA3937_RS04345 0.21 -0.6 954,859 + DDA3937_RS04345 0.21 +1.3 954,859 + DDA3937_RS04345 0.21 -0.7 954,859 + DDA3937_RS04345 0.21 -2.1 954,859 + DDA3937_RS04345 0.21 -2.3 954,859 + DDA3937_RS04345 0.21 -1.0 954,860 - DDA3937_RS04345 0.21 -1.9 954,860 - DDA3937_RS04345 0.21 +0.3 954,860 - DDA3937_RS04345 0.21 -0.6 954,860 - DDA3937_RS04345 0.21 -2.2 954,892 + DDA3937_RS04345 0.27 -1.6 954,892 + DDA3937_RS04345 0.27 -0.4 954,892 + DDA3937_RS04345 0.27 -1.9 954,892 + DDA3937_RS04345 0.27 -1.2 954,893 - DDA3937_RS04345 0.27 -1.2 954,917 + DDA3937_RS04345 0.31 -1.2 954,918 - DDA3937_RS04345 0.31 +0.2 954,947 - DDA3937_RS04345 0.36 -1.6 955,029 + DDA3937_RS04345 0.50 -0.0 955,062 - DDA3937_RS04345 0.56 +1.1 955,090 + DDA3937_RS04345 0.61 -1.8 955,090 + DDA3937_RS04345 0.61 -1.3 955,090 + DDA3937_RS04345 0.61 +0.7 955,090 + DDA3937_RS04345 0.61 +2.4 955,090 + DDA3937_RS04345 0.61 +0.6 955,090 + DDA3937_RS04345 0.61 -0.7 955,090 + DDA3937_RS04345 0.61 -1.9 955,090 + DDA3937_RS04345 0.61 +0.4 955,091 - DDA3937_RS04345 0.61 -0.4 955,091 - DDA3937_RS04345 0.61 -1.4 955,091 - DDA3937_RS04345 0.61 -0.6 955,091 - DDA3937_RS04345 0.61 -0.5 955,091 - DDA3937_RS04345 0.61 -2.7 955,091 - DDA3937_RS04345 0.61 -1.2 955,091 - DDA3937_RS04345 0.61 +0.1 955,091 - DDA3937_RS04345 0.61 +0.4 955,091 - DDA3937_RS04345 0.61 -0.3 955,091 - DDA3937_RS04345 0.61 -0.4 955,159 - DDA3937_RS04345 0.72 -0.0 955,192 - DDA3937_RS04345 0.78 -1.1 955,249 - DDA3937_RS04345 0.88 -1.2 955,260 + DDA3937_RS04345 0.90 -0.2 955,260 + DDA3937_RS04345 0.90 +1.0 955,261 - DDA3937_RS04345 0.90 -0.3 955,329 - -1.0 955,340 + -0.2 955,341 - -2.0 955,346 + +1.9 955,346 + +0.2 955,403 - +0.2 955,403 - -2.0 955,403 - -0.5 955,403 - -0.1 955,499 + DDA3937_RS04350 0.10 +0.3 955,499 + DDA3937_RS04350 0.10 +1.3 955,499 + DDA3937_RS04350 0.10 -1.0 955,500 - DDA3937_RS04350 0.10 +3.3 955,500 - DDA3937_RS04350 0.10 +1.3 955,500 - DDA3937_RS04350 0.10 +0.9 955,717 + DDA3937_RS04350 0.33 -0.0 955,718 - DDA3937_RS04350 0.33 -1.6 955,718 - DDA3937_RS04350 0.33 -1.5 955,718 - DDA3937_RS04350 0.33 -2.4 955,721 - DDA3937_RS04350 0.34 -0.7 955,721 - DDA3937_RS04350 0.34 -1.1 955,726 + DDA3937_RS04350 0.34 -1.0 955,727 - DDA3937_RS04350 0.34 -0.6 955,727 - DDA3937_RS04350 0.34 -2.7 955,727 - DDA3937_RS04350 0.34 -2.5 955,727 - DDA3937_RS04350 0.34 -0.7 955,727 - DDA3937_RS04350 0.34 +0.6 955,730 + DDA3937_RS04350 0.35 -1.4 955,798 + DDA3937_RS04350 0.42 -1.6 955,807 + DDA3937_RS04350 0.43 -2.3 955,808 - DDA3937_RS04350 0.43 +0.4 955,808 - DDA3937_RS04350 0.43 +1.5 955,837 + DDA3937_RS04350 0.46 -0.5 955,837 + DDA3937_RS04350 0.46 -2.5 955,983 + DDA3937_RS04350 0.61 -2.2 955,983 + DDA3937_RS04350 0.61 +1.8 955,983 + DDA3937_RS04350 0.61 -0.0 955,983 + DDA3937_RS04350 0.61 -1.1 955,983 + DDA3937_RS04350 0.61 +0.1 955,983 + DDA3937_RS04350 0.61 +0.5 955,984 - DDA3937_RS04350 0.61 -2.1 955,984 - DDA3937_RS04350 0.61 -0.8 956,000 - DDA3937_RS04350 0.63 +1.5 956,000 - +2.0 956,000 - DDA3937_RS04350 0.63 -0.0 956,024 + -0.0 956,313 + -1.4
Or see this region's nucleotide sequence