Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04330

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS04325 and DDA3937_RS04330 are separated by 83 nucleotidesDDA3937_RS04330 and DDA3937_RS04335 are separated by 153 nucleotides DDA3937_RS04325: DDA3937_RS04325 - DNA repair protein RecN, at 949,582 to 951,243 _RS04325 DDA3937_RS04330: DDA3937_RS04330 - NAD(+) kinase, at 951,327 to 952,205 _RS04330 DDA3937_RS04335: DDA3937_RS04335 - nucleotide exchange factor GrpE, at 952,359 to 952,946 _RS04335 Position (kb) 951 952 953Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 950.348 kb on + strand, within DDA3937_RS04325at 950.348 kb on + strand, within DDA3937_RS04325at 950.349 kb on - strand, within DDA3937_RS04325at 950.349 kb on - strand, within DDA3937_RS04325at 950.349 kb on - strand, within DDA3937_RS04325at 950.373 kb on + strand, within DDA3937_RS04325at 950.374 kb on - strand, within DDA3937_RS04325at 950.384 kb on + strand, within DDA3937_RS04325at 950.384 kb on + strand, within DDA3937_RS04325at 950.385 kb on - strand, within DDA3937_RS04325at 950.385 kb on - strand, within DDA3937_RS04325at 950.392 kb on + strand, within DDA3937_RS04325at 950.392 kb on + strand, within DDA3937_RS04325at 950.393 kb on - strand, within DDA3937_RS04325at 950.393 kb on - strand, within DDA3937_RS04325at 950.393 kb on - strand, within DDA3937_RS04325at 950.603 kb on + strand, within DDA3937_RS04325at 950.604 kb on - strand, within DDA3937_RS04325at 950.604 kb on - strand, within DDA3937_RS04325at 950.624 kb on + strand, within DDA3937_RS04325at 950.625 kb on - strand, within DDA3937_RS04325at 950.769 kb on + strand, within DDA3937_RS04325at 950.798 kb on + strand, within DDA3937_RS04325at 950.799 kb on - strand, within DDA3937_RS04325at 950.925 kb on + strand, within DDA3937_RS04325at 950.925 kb on + strand, within DDA3937_RS04325at 951.129 kb on + strandat 951.129 kb on + strandat 951.129 kb on + strandat 951.130 kb on - strandat 951.130 kb on - strandat 951.247 kb on - strandat 951.256 kb on + strandat 951.257 kb on - strandat 951.257 kb on - strandat 951.261 kb on - strandat 951.287 kb on + strandat 951.287 kb on + strandat 951.287 kb on + strandat 951.288 kb on - strandat 951.288 kb on - strandat 951.288 kb on - strandat 951.308 kb on - strandat 951.312 kb on + strandat 951.323 kb on - strandat 951.396 kb on + strandat 952.272 kb on + strandat 952.274 kb on - strandat 952.274 kb on - strandat 952.274 kb on - strandat 952.274 kb on - strandat 952.274 kb on - strandat 952.316 kb on + strandat 952.945 kb on - strandat 953.038 kb on + strandat 953.038 kb on + strandat 953.039 kb on - strandat 953.050 kb on + strandat 953.051 kb on - strandat 953.051 kb on - strandat 953.051 kb on - strandat 953.051 kb on - strandat 953.100 kb on + strandat 953.101 kb on - strandat 953.101 kb on - strandat 953.104 kb on + strandat 953.104 kb on + strandat 953.105 kb on - strandat 953.138 kb on + strandat 953.138 kb on + strandat 953.142 kb on + strandat 953.143 kb on - strandat 953.179 kb on + strandat 953.179 kb on + strandat 953.180 kb on - strandat 953.180 kb on - strandat 953.194 kb on + strandat 953.194 kb on + strandat 953.195 kb on - strandat 953.195 kb on - strandat 953.195 kb on - strandat 953.195 kb on - strandat 953.198 kb on + strandat 953.198 kb on + strandat 953.198 kb on + strandat 953.198 kb on + strandat 953.198 kb on + strandat 953.199 kb on - strandat 953.201 kb on + strandat 953.202 kb on - strandat 953.202 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
950,348 + DDA3937_RS04325 0.46 -1.2
950,348 + DDA3937_RS04325 0.46 -2.0
950,349 - DDA3937_RS04325 0.46 +0.4
950,349 - DDA3937_RS04325 0.46 -1.4
950,349 - DDA3937_RS04325 0.46 +1.6
950,373 + DDA3937_RS04325 0.48 +0.0
950,374 - DDA3937_RS04325 0.48 +1.4
950,384 + DDA3937_RS04325 0.48 -0.7
950,384 + DDA3937_RS04325 0.48 -1.3
950,385 - DDA3937_RS04325 0.48 +0.3
950,385 - DDA3937_RS04325 0.48 -0.3
950,392 + DDA3937_RS04325 0.49 +1.1
950,392 + DDA3937_RS04325 0.49 +1.5
950,393 - DDA3937_RS04325 0.49 +0.7
950,393 - DDA3937_RS04325 0.49 +0.0
950,393 - DDA3937_RS04325 0.49 -0.1
950,603 + DDA3937_RS04325 0.61 +0.1
950,604 - DDA3937_RS04325 0.61 +0.6
950,604 - DDA3937_RS04325 0.61 -1.6
950,624 + DDA3937_RS04325 0.63 -1.6
950,625 - DDA3937_RS04325 0.63 -1.7
950,769 + DDA3937_RS04325 0.71 -1.9
950,798 + DDA3937_RS04325 0.73 -0.5
950,799 - DDA3937_RS04325 0.73 +0.7
950,925 + DDA3937_RS04325 0.81 +0.1
950,925 + DDA3937_RS04325 0.81 +0.0
951,129 + +1.0
951,129 + -2.1
951,129 + +0.0
951,130 - +0.2
951,130 - +0.9
951,247 - -0.9
951,256 + +0.1
951,257 - +0.2
951,257 - +3.1
951,261 - -0.5
951,287 + +0.0
951,287 + -0.0
951,287 + +1.5
951,288 - -0.7
951,288 - -0.7
951,288 - -0.7
951,308 - -1.5
951,312 + -0.9
951,323 - -1.0
951,396 + +1.3
952,272 + +2.0
952,274 - +0.6
952,274 - +0.3
952,274 - +2.4
952,274 - +0.1
952,274 - -0.7
952,316 + +1.6
952,945 - -0.3
953,038 + +1.7
953,038 + -1.7
953,039 - +0.2
953,050 + -1.6
953,051 - -1.7
953,051 - -1.4
953,051 - +2.8
953,051 - -1.4
953,100 + +0.5
953,101 - +0.6
953,101 - +3.0
953,104 + -0.4
953,104 + -1.2
953,105 - +1.0
953,138 + -0.4
953,138 + +0.5
953,142 + -2.1
953,143 - +1.4
953,179 + -0.4
953,179 + -1.2
953,180 - -1.4
953,180 - +2.1
953,194 + -1.9
953,194 + -4.4
953,195 - -0.3
953,195 - -0.7
953,195 - -1.7
953,195 - -2.8
953,198 + +1.2
953,198 + +1.3
953,198 + +1.5
953,198 + +0.2
953,198 + +1.1
953,199 - +0.1
953,201 + -2.3
953,202 - +0.6
953,202 - -0.4

Or see this region's nucleotide sequence