Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04325 and DDA3937_RS04330 are separated by 83 nucleotides DDA3937_RS04330 and DDA3937_RS04335 are separated by 153 nucleotides
DDA3937_RS04325: DDA3937_RS04325 - DNA repair protein RecN, at 949,582 to 951,243
_RS04325
DDA3937_RS04330: DDA3937_RS04330 - NAD(+) kinase, at 951,327 to 952,205
_RS04330
DDA3937_RS04335: DDA3937_RS04335 - nucleotide exchange factor GrpE, at 952,359 to 952,946
_RS04335
Position (kb) 951
952
953 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 950.348 kb on + strand, within DDA3937_RS04325 at 950.348 kb on + strand, within DDA3937_RS04325 at 950.349 kb on - strand, within DDA3937_RS04325 at 950.349 kb on - strand, within DDA3937_RS04325 at 950.349 kb on - strand, within DDA3937_RS04325 at 950.373 kb on + strand, within DDA3937_RS04325 at 950.374 kb on - strand, within DDA3937_RS04325 at 950.384 kb on + strand, within DDA3937_RS04325 at 950.384 kb on + strand, within DDA3937_RS04325 at 950.385 kb on - strand, within DDA3937_RS04325 at 950.385 kb on - strand, within DDA3937_RS04325 at 950.392 kb on + strand, within DDA3937_RS04325 at 950.392 kb on + strand, within DDA3937_RS04325 at 950.393 kb on - strand, within DDA3937_RS04325 at 950.393 kb on - strand, within DDA3937_RS04325 at 950.393 kb on - strand, within DDA3937_RS04325 at 950.603 kb on + strand, within DDA3937_RS04325 at 950.604 kb on - strand, within DDA3937_RS04325 at 950.604 kb on - strand, within DDA3937_RS04325 at 950.624 kb on + strand, within DDA3937_RS04325 at 950.625 kb on - strand, within DDA3937_RS04325 at 950.769 kb on + strand, within DDA3937_RS04325 at 950.798 kb on + strand, within DDA3937_RS04325 at 950.799 kb on - strand, within DDA3937_RS04325 at 950.925 kb on + strand, within DDA3937_RS04325 at 950.925 kb on + strand, within DDA3937_RS04325 at 951.129 kb on + strand at 951.129 kb on + strand at 951.129 kb on + strand at 951.130 kb on - strand at 951.130 kb on - strand at 951.247 kb on - strand at 951.256 kb on + strand at 951.257 kb on - strand at 951.257 kb on - strand at 951.261 kb on - strand at 951.287 kb on + strand at 951.287 kb on + strand at 951.287 kb on + strand at 951.288 kb on - strand at 951.288 kb on - strand at 951.288 kb on - strand at 951.308 kb on - strand at 951.312 kb on + strand at 951.323 kb on - strand at 951.396 kb on + strand at 952.272 kb on + strand at 952.274 kb on - strand at 952.274 kb on - strand at 952.274 kb on - strand at 952.274 kb on - strand at 952.274 kb on - strand at 952.316 kb on + strand at 952.945 kb on - strand at 953.038 kb on + strand at 953.038 kb on + strand at 953.039 kb on - strand at 953.050 kb on + strand at 953.051 kb on - strand at 953.051 kb on - strand at 953.051 kb on - strand at 953.051 kb on - strand at 953.100 kb on + strand at 953.101 kb on - strand at 953.101 kb on - strand at 953.104 kb on + strand at 953.104 kb on + strand at 953.105 kb on - strand at 953.138 kb on + strand at 953.138 kb on + strand at 953.142 kb on + strand at 953.143 kb on - strand at 953.179 kb on + strand at 953.179 kb on + strand at 953.180 kb on - strand at 953.180 kb on - strand at 953.194 kb on + strand at 953.194 kb on + strand at 953.195 kb on - strand at 953.195 kb on - strand at 953.195 kb on - strand at 953.195 kb on - strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.199 kb on - strand at 953.201 kb on + strand at 953.202 kb on - strand at 953.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 950,348 + DDA3937_RS04325 0.46 -1.2 950,348 + DDA3937_RS04325 0.46 -2.0 950,349 - DDA3937_RS04325 0.46 +0.4 950,349 - DDA3937_RS04325 0.46 -1.4 950,349 - DDA3937_RS04325 0.46 +1.6 950,373 + DDA3937_RS04325 0.48 +0.0 950,374 - DDA3937_RS04325 0.48 +1.4 950,384 + DDA3937_RS04325 0.48 -0.7 950,384 + DDA3937_RS04325 0.48 -1.3 950,385 - DDA3937_RS04325 0.48 +0.3 950,385 - DDA3937_RS04325 0.48 -0.3 950,392 + DDA3937_RS04325 0.49 +1.1 950,392 + DDA3937_RS04325 0.49 +1.5 950,393 - DDA3937_RS04325 0.49 +0.7 950,393 - DDA3937_RS04325 0.49 +0.0 950,393 - DDA3937_RS04325 0.49 -0.1 950,603 + DDA3937_RS04325 0.61 +0.1 950,604 - DDA3937_RS04325 0.61 +0.6 950,604 - DDA3937_RS04325 0.61 -1.6 950,624 + DDA3937_RS04325 0.63 -1.6 950,625 - DDA3937_RS04325 0.63 -1.7 950,769 + DDA3937_RS04325 0.71 -1.9 950,798 + DDA3937_RS04325 0.73 -0.5 950,799 - DDA3937_RS04325 0.73 +0.7 950,925 + DDA3937_RS04325 0.81 +0.1 950,925 + DDA3937_RS04325 0.81 +0.0 951,129 + +1.0 951,129 + -2.1 951,129 + +0.0 951,130 - +0.2 951,130 - +0.9 951,247 - -0.9 951,256 + +0.1 951,257 - +0.2 951,257 - +3.1 951,261 - -0.5 951,287 + +0.0 951,287 + -0.0 951,287 + +1.5 951,288 - -0.7 951,288 - -0.7 951,288 - -0.7 951,308 - -1.5 951,312 + -0.9 951,323 - -1.0 951,396 + +1.3 952,272 + +2.0 952,274 - +0.6 952,274 - +0.3 952,274 - +2.4 952,274 - +0.1 952,274 - -0.7 952,316 + +1.6 952,945 - -0.3 953,038 + +1.7 953,038 + -1.7 953,039 - +0.2 953,050 + -1.6 953,051 - -1.7 953,051 - -1.4 953,051 - +2.8 953,051 - -1.4 953,100 + +0.5 953,101 - +0.6 953,101 - +3.0 953,104 + -0.4 953,104 + -1.2 953,105 - +1.0 953,138 + -0.4 953,138 + +0.5 953,142 + -2.1 953,143 - +1.4 953,179 + -0.4 953,179 + -1.2 953,180 - -1.4 953,180 - +2.1 953,194 + -1.9 953,194 + -4.4 953,195 - -0.3 953,195 - -0.7 953,195 - -1.7 953,195 - -2.8 953,198 + +1.2 953,198 + +1.3 953,198 + +1.5 953,198 + +0.2 953,198 + +1.1 953,199 - +0.1 953,201 + -2.3 953,202 - +0.6 953,202 - -0.4
Or see this region's nucleotide sequence