Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04285 and DDA3937_RS04290 overlap by 29 nucleotides DDA3937_RS04290 and DDA3937_RS04295 are separated by 3 nucleotides DDA3937_RS04295 and DDA3937_RS21940 are separated by 177 nucleotides DDA3937_RS21940 and DDA3937_RS04300 are separated by 181 nucleotides
DDA3937_RS04285: DDA3937_RS04285 - hypothetical protein, at 943,186 to 943,911
_RS04285
DDA3937_RS04290: DDA3937_RS04290 - hypothetical protein, at 943,883 to 944,410
_RS04290
DDA3937_RS04295: DDA3937_RS04295 - hypothetical protein, at 944,414 to 946,066
_RS04295
DDA3937_RS21940: DDA3937_RS21940 - hypothetical protein, at 946,244 to 946,435
_RS21940
DDA3937_RS04300: DDA3937_RS04300 - zinc ribbon domain-containing protein, at 946,617 to 947,123
_RS04300
Position (kb) 944
945
946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 943.415 kb on + strand, within DDA3937_RS04285 at 943.599 kb on + strand, within DDA3937_RS04285 at 943.600 kb on - strand, within DDA3937_RS04285 at 943.803 kb on + strand, within DDA3937_RS04285 at 943.825 kb on + strand, within DDA3937_RS04285 at 943.825 kb on + strand, within DDA3937_RS04285 at 943.826 kb on - strand, within DDA3937_RS04285 at 943.826 kb on - strand, within DDA3937_RS04285 at 943.828 kb on - strand, within DDA3937_RS04285 at 943.828 kb on - strand, within DDA3937_RS04285 at 943.845 kb on + strand at 943.893 kb on + strand at 943.893 kb on + strand at 943.894 kb on - strand at 943.894 kb on - strand at 943.898 kb on - strand at 943.898 kb on - strand at 943.922 kb on - strand at 944.116 kb on + strand, within DDA3937_RS04290 at 944.116 kb on + strand, within DDA3937_RS04290 at 944.116 kb on + strand, within DDA3937_RS04290 at 944.117 kb on - strand, within DDA3937_RS04290 at 944.239 kb on + strand, within DDA3937_RS04290 at 944.240 kb on - strand, within DDA3937_RS04290 at 944.240 kb on - strand, within DDA3937_RS04290 at 944.254 kb on + strand, within DDA3937_RS04290 at 944.254 kb on + strand, within DDA3937_RS04290 at 944.255 kb on - strand, within DDA3937_RS04290 at 944.255 kb on - strand, within DDA3937_RS04290 at 944.454 kb on + strand at 944.454 kb on + strand at 944.455 kb on - strand at 944.455 kb on - strand at 944.455 kb on - strand at 944.455 kb on - strand at 944.455 kb on - strand at 944.455 kb on - strand at 944.455 kb on - strand at 944.463 kb on + strand at 944.463 kb on + strand at 944.464 kb on - strand at 944.464 kb on - strand at 944.474 kb on - strand at 944.479 kb on - strand at 944.509 kb on + strand at 944.534 kb on + strand at 944.534 kb on + strand at 944.534 kb on + strand at 944.534 kb on + strand at 944.535 kb on - strand at 944.535 kb on - strand at 944.535 kb on - strand at 944.535 kb on - strand at 944.567 kb on + strand at 944.568 kb on - strand at 944.570 kb on - strand at 944.788 kb on + strand, within DDA3937_RS04295 at 944.789 kb on - strand, within DDA3937_RS04295 at 944.801 kb on - strand, within DDA3937_RS04295 at 944.801 kb on - strand, within DDA3937_RS04295 at 944.806 kb on + strand, within DDA3937_RS04295 at 944.807 kb on - strand, within DDA3937_RS04295 at 944.807 kb on - strand, within DDA3937_RS04295 at 944.807 kb on - strand, within DDA3937_RS04295 at 944.864 kb on + strand, within DDA3937_RS04295 at 944.864 kb on + strand, within DDA3937_RS04295 at 944.864 kb on + strand, within DDA3937_RS04295 at 944.864 kb on + strand, within DDA3937_RS04295 at 944.864 kb on + strand, within DDA3937_RS04295 at 944.864 kb on + strand, within DDA3937_RS04295 at 944.865 kb on - strand, within DDA3937_RS04295 at 944.865 kb on - strand, within DDA3937_RS04295 at 944.865 kb on - strand, within DDA3937_RS04295 at 944.865 kb on - strand, within DDA3937_RS04295 at 944.897 kb on + strand, within DDA3937_RS04295 at 944.905 kb on + strand, within DDA3937_RS04295 at 944.905 kb on + strand, within DDA3937_RS04295 at 944.906 kb on - strand, within DDA3937_RS04295 at 944.906 kb on - strand, within DDA3937_RS04295 at 944.983 kb on + strand, within DDA3937_RS04295 at 944.983 kb on + strand, within DDA3937_RS04295 at 944.983 kb on + strand, within DDA3937_RS04295 at 944.984 kb on - strand, within DDA3937_RS04295 at 944.984 kb on - strand, within DDA3937_RS04295 at 944.984 kb on - strand, within DDA3937_RS04295 at 944.984 kb on - strand, within DDA3937_RS04295 at 945.003 kb on + strand, within DDA3937_RS04295 at 945.003 kb on + strand, within DDA3937_RS04295 at 945.003 kb on + strand, within DDA3937_RS04295 at 945.003 kb on + strand, within DDA3937_RS04295 at 945.054 kb on + strand, within DDA3937_RS04295 at 945.055 kb on - strand, within DDA3937_RS04295 at 945.055 kb on - strand, within DDA3937_RS04295 at 945.091 kb on - strand, within DDA3937_RS04295 at 945.236 kb on - strand, within DDA3937_RS04295 at 945.276 kb on + strand, within DDA3937_RS04295 at 945.276 kb on + strand, within DDA3937_RS04295 at 945.276 kb on + strand, within DDA3937_RS04295 at 945.277 kb on - strand, within DDA3937_RS04295 at 945.277 kb on - strand, within DDA3937_RS04295 at 945.277 kb on - strand, within DDA3937_RS04295 at 945.283 kb on - strand, within DDA3937_RS04295 at 945.321 kb on + strand, within DDA3937_RS04295 at 945.322 kb on - strand, within DDA3937_RS04295 at 945.322 kb on - strand, within DDA3937_RS04295 at 945.322 kb on - strand, within DDA3937_RS04295 at 945.322 kb on - strand, within DDA3937_RS04295 at 945.322 kb on - strand, within DDA3937_RS04295 at 945.323 kb on + strand, within DDA3937_RS04295 at 945.634 kb on + strand, within DDA3937_RS04295 at 945.690 kb on + strand, within DDA3937_RS04295 at 945.690 kb on + strand, within DDA3937_RS04295 at 945.690 kb on + strand, within DDA3937_RS04295 at 945.690 kb on + strand, within DDA3937_RS04295 at 945.691 kb on - strand, within DDA3937_RS04295 at 945.691 kb on - strand, within DDA3937_RS04295 at 945.691 kb on - strand, within DDA3937_RS04295 at 945.691 kb on - strand, within DDA3937_RS04295 at 945.732 kb on - strand, within DDA3937_RS04295 at 945.757 kb on + strand, within DDA3937_RS04295 at 945.758 kb on - strand, within DDA3937_RS04295 at 945.758 kb on - strand, within DDA3937_RS04295 at 945.758 kb on - strand, within DDA3937_RS04295 at 945.758 kb on - strand, within DDA3937_RS04295 at 945.758 kb on - strand, within DDA3937_RS04295 at 945.786 kb on + strand, within DDA3937_RS04295 at 945.816 kb on + strand, within DDA3937_RS04295 at 945.817 kb on - strand, within DDA3937_RS04295 at 945.858 kb on + strand, within DDA3937_RS04295 at 945.859 kb on - strand, within DDA3937_RS04295 at 945.859 kb on - strand at 945.859 kb on - strand, within DDA3937_RS04295 at 945.859 kb on - strand, within DDA3937_RS04295 at 945.859 kb on - strand, within DDA3937_RS04295 at 945.859 kb on - strand, within DDA3937_RS04295 at 945.973 kb on + strand at 945.973 kb on + strand at 945.973 kb on + strand at 945.974 kb on - strand at 945.977 kb on - strand at 946.005 kb on + strand at 946.005 kb on + strand at 946.006 kb on - strand at 946.046 kb on + strand at 946.046 kb on + strand at 946.046 kb on + strand at 946.047 kb on - strand at 946.047 kb on - strand at 946.047 kb on - strand at 946.047 kb on - strand at 946.047 kb on - strand at 946.075 kb on + strand at 946.075 kb on + strand at 946.080 kb on - strand at 946.107 kb on + strand at 946.162 kb on + strand at 946.200 kb on + strand at 946.261 kb on - strand at 946.505 kb on + strand at 946.518 kb on + strand at 946.518 kb on + strand at 946.519 kb on - strand at 946.519 kb on - strand at 946.528 kb on + strand at 946.529 kb on - strand at 946.529 kb on - strand at 946.618 kb on + strand at 946.619 kb on - strand at 946.635 kb on - strand at 946.658 kb on + strand at 946.659 kb on - strand at 946.672 kb on + strand, within DDA3937_RS04300 at 946.672 kb on + strand, within DDA3937_RS04300 at 946.673 kb on - strand, within DDA3937_RS04300 at 946.673 kb on - strand, within DDA3937_RS04300 at 946.673 kb on - strand, within DDA3937_RS04300 at 946.684 kb on + strand, within DDA3937_RS04300 at 946.684 kb on + strand, within DDA3937_RS04300 at 946.684 kb on + strand, within DDA3937_RS04300 at 946.684 kb on + strand, within DDA3937_RS04300 at 946.685 kb on - strand, within DDA3937_RS04300 at 946.685 kb on - strand, within DDA3937_RS04300 at 946.685 kb on - strand, within DDA3937_RS04300 at 946.685 kb on - strand, within DDA3937_RS04300 at 946.822 kb on + strand, within DDA3937_RS04300 at 946.822 kb on + strand, within DDA3937_RS04300 at 946.822 kb on + strand, within DDA3937_RS04300 at 946.822 kb on + strand, within DDA3937_RS04300 at 946.823 kb on - strand, within DDA3937_RS04300 at 946.881 kb on - strand, within DDA3937_RS04300 at 946.975 kb on - strand, within DDA3937_RS04300 at 946.975 kb on - strand, within DDA3937_RS04300 at 946.976 kb on + strand, within DDA3937_RS04300 at 946.977 kb on - strand, within DDA3937_RS04300 at 946.977 kb on - strand, within DDA3937_RS04300 at 946.977 kb on - strand, within DDA3937_RS04300 at 946.977 kb on - strand, within DDA3937_RS04300 at 947.004 kb on + strand, within DDA3937_RS04300 at 947.004 kb on + strand, within DDA3937_RS04300 at 947.004 kb on + strand, within DDA3937_RS04300 at 947.004 kb on + strand, within DDA3937_RS04300
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 943,415 + DDA3937_RS04285 0.32 -0.4 943,599 + DDA3937_RS04285 0.57 -2.2 943,600 - DDA3937_RS04285 0.57 -1.4 943,803 + DDA3937_RS04285 0.85 -2.6 943,825 + DDA3937_RS04285 0.88 -1.6 943,825 + DDA3937_RS04285 0.88 -1.8 943,826 - DDA3937_RS04285 0.88 +1.2 943,826 - DDA3937_RS04285 0.88 +1.6 943,828 - DDA3937_RS04285 0.88 +1.3 943,828 - DDA3937_RS04285 0.88 -0.0 943,845 + +2.4 943,893 + -3.1 943,893 + -1.4 943,894 - -0.9 943,894 - -1.2 943,898 - +2.1 943,898 - -0.5 943,922 - +2.3 944,116 + DDA3937_RS04290 0.44 +0.5 944,116 + DDA3937_RS04290 0.44 -2.7 944,116 + DDA3937_RS04290 0.44 +0.3 944,117 - DDA3937_RS04290 0.44 -1.2 944,239 + DDA3937_RS04290 0.67 -0.4 944,240 - DDA3937_RS04290 0.68 +1.7 944,240 - DDA3937_RS04290 0.68 -1.5 944,254 + DDA3937_RS04290 0.70 +0.0 944,254 + DDA3937_RS04290 0.70 -1.5 944,255 - DDA3937_RS04290 0.70 -1.9 944,255 - DDA3937_RS04290 0.70 +3.0 944,454 + -1.3 944,454 + +0.3 944,455 - +0.9 944,455 - -1.6 944,455 - -1.4 944,455 - -1.0 944,455 - -0.0 944,455 - -2.9 944,455 - -0.7 944,463 + +1.3 944,463 + -0.0 944,464 - -0.4 944,464 - -3.4 944,474 - -0.8 944,479 - -3.1 944,509 + +1.8 944,534 + -1.4 944,534 + -0.2 944,534 + +1.6 944,534 + -2.0 944,535 - +0.8 944,535 - -0.3 944,535 - -1.6 944,535 - +0.6 944,567 + +0.9 944,568 - +1.8 944,570 - -1.1 944,788 + DDA3937_RS04295 0.23 +2.2 944,789 - DDA3937_RS04295 0.23 +0.2 944,801 - DDA3937_RS04295 0.23 -1.7 944,801 - DDA3937_RS04295 0.23 +0.3 944,806 + DDA3937_RS04295 0.24 -1.4 944,807 - DDA3937_RS04295 0.24 -2.1 944,807 - DDA3937_RS04295 0.24 -0.4 944,807 - DDA3937_RS04295 0.24 -3.3 944,864 + DDA3937_RS04295 0.27 +1.3 944,864 + DDA3937_RS04295 0.27 -2.1 944,864 + DDA3937_RS04295 0.27 -0.0 944,864 + DDA3937_RS04295 0.27 -0.9 944,864 + DDA3937_RS04295 0.27 -2.0 944,864 + DDA3937_RS04295 0.27 -1.1 944,865 - DDA3937_RS04295 0.27 -2.1 944,865 - DDA3937_RS04295 0.27 -2.0 944,865 - DDA3937_RS04295 0.27 -0.2 944,865 - DDA3937_RS04295 0.27 +1.6 944,897 + DDA3937_RS04295 0.29 +0.3 944,905 + DDA3937_RS04295 0.30 -0.3 944,905 + DDA3937_RS04295 0.30 -1.2 944,906 - DDA3937_RS04295 0.30 -2.9 944,906 - DDA3937_RS04295 0.30 -0.8 944,983 + DDA3937_RS04295 0.34 -1.6 944,983 + DDA3937_RS04295 0.34 +1.0 944,983 + DDA3937_RS04295 0.34 -2.6 944,984 - DDA3937_RS04295 0.34 -0.6 944,984 - DDA3937_RS04295 0.34 +0.6 944,984 - DDA3937_RS04295 0.34 -0.7 944,984 - DDA3937_RS04295 0.34 -0.2 945,003 + DDA3937_RS04295 0.36 -1.1 945,003 + DDA3937_RS04295 0.36 -3.3 945,003 + DDA3937_RS04295 0.36 +0.4 945,003 + DDA3937_RS04295 0.36 -1.0 945,054 + DDA3937_RS04295 0.39 -0.5 945,055 - DDA3937_RS04295 0.39 -0.4 945,055 - DDA3937_RS04295 0.39 -2.7 945,091 - DDA3937_RS04295 0.41 -2.4 945,236 - DDA3937_RS04295 0.50 -1.2 945,276 + DDA3937_RS04295 0.52 -2.2 945,276 + DDA3937_RS04295 0.52 +0.6 945,276 + DDA3937_RS04295 0.52 +0.7 945,277 - DDA3937_RS04295 0.52 +0.6 945,277 - DDA3937_RS04295 0.52 +1.1 945,277 - DDA3937_RS04295 0.52 +1.4 945,283 - DDA3937_RS04295 0.53 -1.7 945,321 + DDA3937_RS04295 0.55 +1.4 945,322 - DDA3937_RS04295 0.55 -1.8 945,322 - DDA3937_RS04295 0.55 -0.7 945,322 - DDA3937_RS04295 0.55 -2.7 945,322 - DDA3937_RS04295 0.55 +1.3 945,322 - DDA3937_RS04295 0.55 -2.1 945,323 + DDA3937_RS04295 0.55 +0.4 945,634 + DDA3937_RS04295 0.74 -1.2 945,690 + DDA3937_RS04295 0.77 -0.2 945,690 + DDA3937_RS04295 0.77 -1.2 945,690 + DDA3937_RS04295 0.77 -1.4 945,690 + DDA3937_RS04295 0.77 -0.3 945,691 - DDA3937_RS04295 0.77 -2.9 945,691 - DDA3937_RS04295 0.77 -0.7 945,691 - DDA3937_RS04295 0.77 -0.7 945,691 - DDA3937_RS04295 0.77 +1.2 945,732 - DDA3937_RS04295 0.80 -1.9 945,757 + DDA3937_RS04295 0.81 +0.4 945,758 - DDA3937_RS04295 0.81 +0.0 945,758 - DDA3937_RS04295 0.81 -2.7 945,758 - DDA3937_RS04295 0.81 +0.5 945,758 - DDA3937_RS04295 0.81 +1.0 945,758 - DDA3937_RS04295 0.81 -0.4 945,786 + DDA3937_RS04295 0.83 +0.2 945,816 + DDA3937_RS04295 0.85 -1.4 945,817 - DDA3937_RS04295 0.85 +1.9 945,858 + DDA3937_RS04295 0.87 +0.5 945,859 - DDA3937_RS04295 0.87 -3.4 945,859 - +1.6 945,859 - DDA3937_RS04295 0.87 -2.9 945,859 - DDA3937_RS04295 0.87 -0.1 945,859 - DDA3937_RS04295 0.87 -3.2 945,859 - DDA3937_RS04295 0.87 -0.2 945,973 + +2.5 945,973 + +1.0 945,973 + -0.7 945,974 - +0.1 945,977 - -2.7 946,005 + -1.0 946,005 + +0.2 946,006 - -0.5 946,046 + +0.3 946,046 + -0.0 946,046 + +1.1 946,047 - -1.4 946,047 - -0.7 946,047 - -2.2 946,047 - +0.8 946,047 - +0.6 946,075 + +0.2 946,075 + -1.4 946,080 - -0.2 946,107 + +1.0 946,162 + -1.6 946,200 + -0.9 946,261 - -1.4 946,505 + +1.2 946,518 + +1.6 946,518 + +0.6 946,519 - +1.5 946,519 - +2.9 946,528 + +0.3 946,529 - -1.7 946,529 - +0.9 946,618 + -1.0 946,619 - +0.8 946,635 - -2.7 946,658 + -3.1 946,659 - -1.5 946,672 + DDA3937_RS04300 0.11 +1.9 946,672 + DDA3937_RS04300 0.11 +0.0 946,673 - DDA3937_RS04300 0.11 -0.3 946,673 - DDA3937_RS04300 0.11 +0.4 946,673 - DDA3937_RS04300 0.11 +0.5 946,684 + DDA3937_RS04300 0.13 +4.4 946,684 + DDA3937_RS04300 0.13 -1.4 946,684 + DDA3937_RS04300 0.13 +1.6 946,684 + DDA3937_RS04300 0.13 -2.1 946,685 - DDA3937_RS04300 0.13 -1.4 946,685 - DDA3937_RS04300 0.13 +0.6 946,685 - DDA3937_RS04300 0.13 +0.7 946,685 - DDA3937_RS04300 0.13 +0.9 946,822 + DDA3937_RS04300 0.40 -0.1 946,822 + DDA3937_RS04300 0.40 -3.0 946,822 + DDA3937_RS04300 0.40 -3.1 946,822 + DDA3937_RS04300 0.40 +1.6 946,823 - DDA3937_RS04300 0.41 -1.9 946,881 - DDA3937_RS04300 0.52 +0.7 946,975 - DDA3937_RS04300 0.71 -1.6 946,975 - DDA3937_RS04300 0.71 +0.4 946,976 + DDA3937_RS04300 0.71 -0.4 946,977 - DDA3937_RS04300 0.71 -0.7 946,977 - DDA3937_RS04300 0.71 +0.0 946,977 - DDA3937_RS04300 0.71 -1.4 946,977 - DDA3937_RS04300 0.71 +1.0 947,004 + DDA3937_RS04300 0.76 -0.3 947,004 + DDA3937_RS04300 0.76 -0.3 947,004 + DDA3937_RS04300 0.76 -1.6 947,004 + DDA3937_RS04300 0.76 -0.9
Or see this region's nucleotide sequence