Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21905 and DDA3937_RS04065 are separated by 637 nucleotides DDA3937_RS04065 and DDA3937_RS04070 are separated by 300 nucleotides DDA3937_RS04070 and DDA3937_RS21910 are separated by 92 nucleotides DDA3937_RS21910 and DDA3937_RS04080 are separated by 102 nucleotides
DDA3937_RS21905: DDA3937_RS21905 - restriction endonuclease, at 903,527 to 904,039
_RS21905
DDA3937_RS04065: DDA3937_RS04065 - H-NS histone family protein, at 904,677 to 905,078
_RS04065
DDA3937_RS04070: DDA3937_RS04070 - helix-turn-helix transcriptional regulator, at 905,379 to 905,597
_RS04070
DDA3937_RS21910: DDA3937_RS21910 - helix-turn-helix transcriptional regulator, at 905,690 to 905,920
_RS21910
DDA3937_RS04080: DDA3937_RS04080 - helix-turn-helix domain-containing protein, at 906,023 to 906,268
_RS04080
Position (kb) 904
905
906 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.688 kb on - strand, within DDA3937_RS21905 at 903.696 kb on + strand, within DDA3937_RS21905 at 903.697 kb on - strand, within DDA3937_RS21905 at 903.724 kb on + strand, within DDA3937_RS21905 at 903.738 kb on + strand, within DDA3937_RS21905 at 903.751 kb on - strand, within DDA3937_RS21905 at 903.755 kb on - strand, within DDA3937_RS21905 at 903.802 kb on + strand, within DDA3937_RS21905 at 903.828 kb on + strand, within DDA3937_RS21905 at 903.843 kb on + strand, within DDA3937_RS21905 at 903.885 kb on + strand, within DDA3937_RS21905 at 903.885 kb on + strand, within DDA3937_RS21905 at 903.921 kb on - strand, within DDA3937_RS21905 at 903.925 kb on + strand, within DDA3937_RS21905 at 903.927 kb on + strand, within DDA3937_RS21905 at 903.928 kb on - strand, within DDA3937_RS21905 at 903.928 kb on - strand, within DDA3937_RS21905 at 903.979 kb on - strand, within DDA3937_RS21905 at 904.070 kb on + strand at 904.133 kb on + strand at 904.134 kb on - strand at 904.145 kb on - strand at 904.151 kb on - strand at 904.226 kb on - strand at 904.293 kb on + strand at 904.324 kb on - strand at 904.339 kb on + strand at 904.339 kb on + strand at 904.340 kb on - strand at 904.343 kb on + strand at 904.382 kb on - strand at 904.382 kb on - strand at 904.414 kb on + strand at 904.444 kb on + strand at 904.558 kb on + strand at 904.558 kb on + strand at 904.558 kb on + strand at 904.579 kb on - strand at 904.650 kb on + strand at 904.651 kb on - strand at 905.392 kb on - strand at 905.538 kb on + strand, within DDA3937_RS04070 at 905.589 kb on - strand at 905.657 kb on + strand at 905.657 kb on + strand at 905.657 kb on + strand at 905.658 kb on - strand at 905.658 kb on - strand at 905.708 kb on + strand at 905.752 kb on + strand, within DDA3937_RS21910 at 905.752 kb on + strand, within DDA3937_RS21910 at 905.753 kb on - strand, within DDA3937_RS21910 at 905.753 kb on - strand, within DDA3937_RS21910 at 905.754 kb on + strand, within DDA3937_RS21910 at 905.754 kb on + strand, within DDA3937_RS21910 at 905.754 kb on + strand, within DDA3937_RS21910 at 905.754 kb on + strand, within DDA3937_RS21910 at 905.754 kb on + strand, within DDA3937_RS21910 at 905.754 kb on + strand, within DDA3937_RS21910 at 905.755 kb on - strand, within DDA3937_RS21910 at 905.755 kb on - strand, within DDA3937_RS21910 at 905.755 kb on - strand, within DDA3937_RS21910 at 905.755 kb on - strand, within DDA3937_RS21910 at 905.755 kb on - strand, within DDA3937_RS21910 at 905.805 kb on + strand, within DDA3937_RS21910 at 905.805 kb on + strand, within DDA3937_RS21910 at 905.805 kb on + strand, within DDA3937_RS21910 at 905.805 kb on + strand, within DDA3937_RS21910 at 905.805 kb on + strand, within DDA3937_RS21910 at 905.806 kb on - strand, within DDA3937_RS21910 at 905.806 kb on - strand, within DDA3937_RS21910 at 905.806 kb on - strand, within DDA3937_RS21910 at 905.925 kb on + strand at 905.925 kb on + strand at 905.926 kb on - strand at 906.022 kb on + strand at 906.023 kb on - strand at 906.066 kb on + strand, within DDA3937_RS04080 at 906.067 kb on - strand, within DDA3937_RS04080 at 906.067 kb on - strand, within DDA3937_RS04080
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 903,687 + DDA3937_RS21905 0.31 -1.3 903,687 + DDA3937_RS21905 0.31 -1.5 903,687 + DDA3937_RS21905 0.31 -0.0 903,688 - DDA3937_RS21905 0.31 -2.0 903,696 + DDA3937_RS21905 0.33 -1.2 903,697 - DDA3937_RS21905 0.33 +1.1 903,724 + DDA3937_RS21905 0.38 -0.4 903,738 + DDA3937_RS21905 0.41 -2.0 903,751 - DDA3937_RS21905 0.44 -1.0 903,755 - DDA3937_RS21905 0.44 +0.6 903,802 + DDA3937_RS21905 0.54 +0.0 903,828 + DDA3937_RS21905 0.59 +3.0 903,843 + DDA3937_RS21905 0.62 -2.0 903,885 + DDA3937_RS21905 0.70 -1.5 903,885 + DDA3937_RS21905 0.70 -1.7 903,921 - DDA3937_RS21905 0.77 +1.5 903,925 + DDA3937_RS21905 0.78 -1.2 903,927 + DDA3937_RS21905 0.78 -2.3 903,928 - DDA3937_RS21905 0.78 +0.1 903,928 - DDA3937_RS21905 0.78 +0.0 903,979 - DDA3937_RS21905 0.88 +1.1 904,070 + +0.3 904,133 + -3.1 904,134 - -0.4 904,145 - -3.0 904,151 - -0.6 904,226 - -2.5 904,293 + -2.1 904,324 - -1.8 904,339 + +0.8 904,339 + -2.1 904,340 - -1.4 904,343 + +2.7 904,382 - -2.0 904,382 - -1.7 904,414 + -1.0 904,444 + +1.5 904,558 + -1.7 904,558 + +0.0 904,558 + -1.5 904,579 - -0.0 904,650 + -2.4 904,651 - -0.0 905,392 - +0.0 905,538 + DDA3937_RS04070 0.73 -0.3 905,589 - -1.6 905,657 + -1.6 905,657 + +0.9 905,657 + +0.1 905,658 - -1.4 905,658 - -1.0 905,708 + +1.3 905,752 + DDA3937_RS21910 0.27 -1.9 905,752 + DDA3937_RS21910 0.27 +0.6 905,753 - DDA3937_RS21910 0.27 -0.4 905,753 - DDA3937_RS21910 0.27 -2.0 905,754 + DDA3937_RS21910 0.28 +2.9 905,754 + DDA3937_RS21910 0.28 -3.2 905,754 + DDA3937_RS21910 0.28 +2.8 905,754 + DDA3937_RS21910 0.28 +2.2 905,754 + DDA3937_RS21910 0.28 +0.0 905,754 + DDA3937_RS21910 0.28 +0.6 905,755 - DDA3937_RS21910 0.28 -1.3 905,755 - DDA3937_RS21910 0.28 -1.6 905,755 - DDA3937_RS21910 0.28 +0.0 905,755 - DDA3937_RS21910 0.28 -0.4 905,755 - DDA3937_RS21910 0.28 +0.1 905,805 + DDA3937_RS21910 0.50 -3.9 905,805 + DDA3937_RS21910 0.50 -0.4 905,805 + DDA3937_RS21910 0.50 -0.9 905,805 + DDA3937_RS21910 0.50 -3.0 905,805 + DDA3937_RS21910 0.50 -0.9 905,806 - DDA3937_RS21910 0.50 +1.3 905,806 - DDA3937_RS21910 0.50 -0.4 905,806 - DDA3937_RS21910 0.50 +1.2 905,925 + +0.2 905,925 + +0.3 905,926 - -2.9 906,022 + +0.3 906,023 - -1.4 906,066 + DDA3937_RS04080 0.17 -1.9 906,067 - DDA3937_RS04080 0.18 +0.1 906,067 - DDA3937_RS04080 0.18 -1.6
Or see this region's nucleotide sequence