Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03845

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03840 and DDA3937_RS03845 are separated by 281 nucleotidesDDA3937_RS03845 and DDA3937_RS03850 are separated by 220 nucleotides DDA3937_RS03840: DDA3937_RS03840 - IS3 family transposase, at 850,960 to 852,069 _RS03840 DDA3937_RS03845: DDA3937_RS03845 - hypothetical protein, at 852,351 to 853,034 _RS03845 DDA3937_RS03850: DDA3937_RS03850 - NACHT domain-containing protein, at 853,255 to 858,222 _RS03850 Position (kb) 852 853 854Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 851.362 kb on - strand, within DDA3937_RS03840at 851.694 kb on - strand, within DDA3937_RS03840at 852.060 kb on + strandat 852.063 kb on + strandat 852.071 kb on + strandat 852.071 kb on + strandat 852.080 kb on + strandat 852.080 kb on + strandat 852.080 kb on + strandat 852.119 kb on + strandat 852.127 kb on + strandat 852.127 kb on + strandat 852.127 kb on + strandat 852.128 kb on - strandat 852.130 kb on + strandat 852.231 kb on + strandat 852.237 kb on + strandat 852.237 kb on + strandat 852.237 kb on + strandat 852.238 kb on - strandat 852.245 kb on + strandat 852.245 kb on + strandat 852.246 kb on - strandat 852.258 kb on - strandat 852.259 kb on + strandat 852.259 kb on + strandat 852.260 kb on - strandat 852.281 kb on - strandat 852.285 kb on + strandat 852.286 kb on - strandat 852.308 kb on - strandat 852.321 kb on + strandat 852.402 kb on + strandat 852.402 kb on + strandat 852.403 kb on - strandat 852.403 kb on - strandat 852.427 kb on + strand, within DDA3937_RS03845at 852.452 kb on + strand, within DDA3937_RS03845at 852.453 kb on - strand, within DDA3937_RS03845at 852.453 kb on - strand, within DDA3937_RS03845at 852.453 kb on - strand, within DDA3937_RS03845at 852.500 kb on - strand, within DDA3937_RS03845at 852.500 kb on - strand, within DDA3937_RS03845at 852.522 kb on + strand, within DDA3937_RS03845at 852.538 kb on - strand, within DDA3937_RS03845at 852.590 kb on + strand, within DDA3937_RS03845at 852.591 kb on - strand, within DDA3937_RS03845at 852.622 kb on + strand, within DDA3937_RS03845at 852.623 kb on - strand, within DDA3937_RS03845at 852.623 kb on - strand, within DDA3937_RS03845at 852.623 kb on - strand, within DDA3937_RS03845at 852.623 kb on - strand, within DDA3937_RS03845at 852.640 kb on + strand, within DDA3937_RS03845at 852.672 kb on + strand, within DDA3937_RS03845at 852.672 kb on + strand, within DDA3937_RS03845at 852.672 kb on + strand, within DDA3937_RS03845at 852.705 kb on + strand, within DDA3937_RS03845at 852.774 kb on - strand, within DDA3937_RS03845at 852.837 kb on + strand, within DDA3937_RS03845at 852.837 kb on + strand, within DDA3937_RS03845at 852.837 kb on + strand, within DDA3937_RS03845at 852.838 kb on - strand, within DDA3937_RS03845at 852.912 kb on + strand, within DDA3937_RS03845at 852.912 kb on + strand, within DDA3937_RS03845at 852.913 kb on - strand, within DDA3937_RS03845at 852.913 kb on - strand, within DDA3937_RS03845at 852.941 kb on + strand, within DDA3937_RS03845at 852.941 kb on + strand, within DDA3937_RS03845at 852.941 kb on + strand, within DDA3937_RS03845at 853.004 kb on + strandat 853.005 kb on - strandat 853.163 kb on - strandat 853.333 kb on - strandat 853.379 kb on + strandat 853.380 kb on - strandat 853.389 kb on + strandat 853.389 kb on + strandat 853.479 kb on - strandat 853.494 kb on - strandat 853.590 kb on + strandat 853.890 kb on - strand, within DDA3937_RS03850at 853.942 kb on - strand, within DDA3937_RS03850at 853.952 kb on - strand, within DDA3937_RS03850at 853.961 kb on + strand, within DDA3937_RS03850at 854.018 kb on + strand, within DDA3937_RS03850at 854.019 kb on - strand, within DDA3937_RS03850at 854.028 kb on + strand, within DDA3937_RS03850at 854.029 kb on - strand, within DDA3937_RS03850

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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851,362 - DDA3937_RS03840 0.36 -1.0
851,694 - DDA3937_RS03840 0.66 +2.2
852,060 + +0.3
852,063 + +0.5
852,071 + -0.8
852,071 + -0.7
852,080 + -0.9
852,080 + -2.2
852,080 + +0.0
852,119 + -1.5
852,127 + +2.6
852,127 + +0.0
852,127 + +0.1
852,128 - -1.8
852,130 + +1.2
852,231 + -1.0
852,237 + -2.0
852,237 + +1.4
852,237 + -2.5
852,238 - +0.1
852,245 + +0.8
852,245 + +0.8
852,246 - +2.4
852,258 - -1.6
852,259 + -2.0
852,259 + -0.7
852,260 - -3.5
852,281 - +1.2
852,285 + -1.1
852,286 - -2.9
852,308 - -1.5
852,321 + -0.7
852,402 + +1.1
852,402 + +2.0
852,403 - -2.9
852,403 - -0.2
852,427 + DDA3937_RS03845 0.11 +1.0
852,452 + DDA3937_RS03845 0.15 +1.3
852,453 - DDA3937_RS03845 0.15 -1.5
852,453 - DDA3937_RS03845 0.15 +2.7
852,453 - DDA3937_RS03845 0.15 -1.7
852,500 - DDA3937_RS03845 0.22 -0.8
852,500 - DDA3937_RS03845 0.22 -1.2
852,522 + DDA3937_RS03845 0.25 -2.7
852,538 - DDA3937_RS03845 0.27 -1.2
852,590 + DDA3937_RS03845 0.35 +0.5
852,591 - DDA3937_RS03845 0.35 -1.2
852,622 + DDA3937_RS03845 0.40 +1.2
852,623 - DDA3937_RS03845 0.40 +0.9
852,623 - DDA3937_RS03845 0.40 +0.9
852,623 - DDA3937_RS03845 0.40 -1.5
852,623 - DDA3937_RS03845 0.40 -1.0
852,640 + DDA3937_RS03845 0.42 -1.1
852,672 + DDA3937_RS03845 0.47 -0.7
852,672 + DDA3937_RS03845 0.47 -1.0
852,672 + DDA3937_RS03845 0.47 +2.1
852,705 + DDA3937_RS03845 0.52 -3.8
852,774 - DDA3937_RS03845 0.62 -1.7
852,837 + DDA3937_RS03845 0.71 +0.4
852,837 + DDA3937_RS03845 0.71 -2.2
852,837 + DDA3937_RS03845 0.71 -0.9
852,838 - DDA3937_RS03845 0.71 -0.7
852,912 + DDA3937_RS03845 0.82 -0.6
852,912 + DDA3937_RS03845 0.82 -1.0
852,913 - DDA3937_RS03845 0.82 -2.4
852,913 - DDA3937_RS03845 0.82 -0.4
852,941 + DDA3937_RS03845 0.86 -0.3
852,941 + DDA3937_RS03845 0.86 -1.2
852,941 + DDA3937_RS03845 0.86 +2.5
853,004 + -0.3
853,005 - +0.6
853,163 - -1.1
853,333 - -1.7
853,379 + -0.3
853,380 - -0.4
853,389 + -3.2
853,389 + -1.7
853,479 - +0.6
853,494 - +1.3
853,590 + -2.0
853,890 - DDA3937_RS03850 0.13 -0.7
853,942 - DDA3937_RS03850 0.14 -0.6
853,952 - DDA3937_RS03850 0.14 -3.5
853,961 + DDA3937_RS03850 0.14 +2.6
854,018 + DDA3937_RS03850 0.15 +0.1
854,019 - DDA3937_RS03850 0.15 -0.7
854,028 + DDA3937_RS03850 0.16 +0.6
854,029 - DDA3937_RS03850 0.16 +0.3

Or see this region's nucleotide sequence