Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03610 and DDA3937_RS03615 are separated by 314 nucleotides DDA3937_RS03615 and DDA3937_RS03620 are separated by 14 nucleotides DDA3937_RS03620 and DDA3937_RS03625 are separated by 56 nucleotides
DDA3937_RS03610: DDA3937_RS03610 - DinI family protein, at 798,024 to 798,263
_RS03610
DDA3937_RS03615: DDA3937_RS03615 - VOC family protein, at 798,578 to 798,973
_RS03615
DDA3937_RS03620: DDA3937_RS03620 - hypothetical protein, at 798,988 to 799,272
_RS03620
DDA3937_RS03625: DDA3937_RS03625 - D-alanine--D-alanine ligase, at 799,329 to 800,429
_RS03625
Position (kb) 798
799
800 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 797.996 kb on + strand at 797.997 kb on - strand at 798.025 kb on + strand at 798.025 kb on + strand at 798.025 kb on + strand at 798.026 kb on - strand at 798.056 kb on + strand, within DDA3937_RS03610 at 798.198 kb on - strand, within DDA3937_RS03610 at 798.239 kb on + strand, within DDA3937_RS03610 at 798.240 kb on - strand at 798.244 kb on + strand at 798.244 kb on + strand at 798.256 kb on - strand at 798.256 kb on - strand at 798.256 kb on - strand at 798.259 kb on + strand at 798.259 kb on + strand at 798.259 kb on + strand at 798.259 kb on + strand at 798.259 kb on + strand at 798.259 kb on + strand at 798.260 kb on - strand at 798.260 kb on - strand at 798.260 kb on - strand at 798.260 kb on - strand at 798.260 kb on - strand at 798.260 kb on - strand at 798.260 kb on - strand at 798.260 kb on - strand at 798.264 kb on + strand at 798.264 kb on + strand at 798.264 kb on + strand at 798.264 kb on + strand at 798.264 kb on + strand at 798.264 kb on + strand at 798.264 kb on + strand at 798.264 kb on + strand at 798.265 kb on - strand at 798.265 kb on - strand at 798.297 kb on - strand at 798.306 kb on + strand at 798.334 kb on + strand at 798.362 kb on + strand at 798.362 kb on + strand at 798.363 kb on - strand at 798.363 kb on - strand at 798.364 kb on + strand at 798.365 kb on - strand at 798.365 kb on - strand at 798.365 kb on - strand at 798.424 kb on - strand at 798.424 kb on - strand at 798.497 kb on + strand at 798.542 kb on - strand at 798.577 kb on + strand at 798.577 kb on + strand at 798.577 kb on + strand at 798.577 kb on + strand at 798.578 kb on - strand at 798.578 kb on - strand at 798.588 kb on + strand at 798.589 kb on - strand at 798.636 kb on - strand, within DDA3937_RS03615 at 798.636 kb on - strand, within DDA3937_RS03615 at 798.636 kb on - strand, within DDA3937_RS03615 at 798.649 kb on - strand, within DDA3937_RS03615 at 798.700 kb on + strand, within DDA3937_RS03615 at 798.700 kb on + strand, within DDA3937_RS03615 at 798.700 kb on + strand, within DDA3937_RS03615 at 798.700 kb on + strand, within DDA3937_RS03615 at 798.700 kb on + strand, within DDA3937_RS03615 at 798.700 kb on + strand, within DDA3937_RS03615 at 798.701 kb on - strand, within DDA3937_RS03615 at 798.701 kb on - strand, within DDA3937_RS03615 at 798.701 kb on - strand, within DDA3937_RS03615 at 798.752 kb on - strand, within DDA3937_RS03615 at 798.752 kb on - strand, within DDA3937_RS03615 at 798.800 kb on + strand, within DDA3937_RS03615 at 798.801 kb on - strand, within DDA3937_RS03615 at 798.801 kb on - strand, within DDA3937_RS03615 at 798.801 kb on - strand, within DDA3937_RS03615 at 798.877 kb on + strand, within DDA3937_RS03615 at 798.877 kb on + strand, within DDA3937_RS03615 at 798.878 kb on - strand, within DDA3937_RS03615 at 798.970 kb on - strand at 798.992 kb on - strand at 799.009 kb on + strand at 799.141 kb on - strand, within DDA3937_RS03620 at 799.141 kb on - strand, within DDA3937_RS03620 at 799.207 kb on + strand, within DDA3937_RS03620 at 799.208 kb on - strand, within DDA3937_RS03620 at 799.208 kb on - strand, within DDA3937_RS03620 at 799.208 kb on - strand, within DDA3937_RS03620
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 797,996 + -1.5 797,997 - +0.9 798,025 + -1.4 798,025 + -1.1 798,025 + -0.5 798,026 - -1.2 798,056 + DDA3937_RS03610 0.13 -1.5 798,198 - DDA3937_RS03610 0.72 -1.7 798,239 + DDA3937_RS03610 0.90 +1.2 798,240 - -0.7 798,244 + +0.7 798,244 + -3.5 798,256 - +0.4 798,256 - +1.5 798,256 - +0.3 798,259 + -4.5 798,259 + -2.1 798,259 + -2.1 798,259 + -0.9 798,259 + -0.4 798,259 + -0.7 798,260 - -0.7 798,260 - -1.5 798,260 - -1.4 798,260 - +0.8 798,260 - -0.8 798,260 - -1.8 798,260 - -0.9 798,260 - -1.2 798,264 + +0.3 798,264 + -2.3 798,264 + +3.5 798,264 + -1.5 798,264 + -1.4 798,264 + +2.8 798,264 + -0.5 798,264 + +1.4 798,265 - +0.9 798,265 - +0.5 798,297 - -1.4 798,306 + -0.7 798,334 + -1.2 798,362 + -1.8 798,362 + -1.4 798,363 - +0.2 798,363 - -0.4 798,364 + -2.4 798,365 - -2.4 798,365 - -2.2 798,365 - -1.2 798,424 - -0.4 798,424 - -0.6 798,497 + -2.1 798,542 - -0.2 798,577 + +0.2 798,577 + +2.5 798,577 + -0.0 798,577 + +0.1 798,578 - -0.3 798,578 - -0.9 798,588 + +1.2 798,589 - -0.0 798,636 - DDA3937_RS03615 0.15 -2.4 798,636 - DDA3937_RS03615 0.15 -3.3 798,636 - DDA3937_RS03615 0.15 -1.8 798,649 - DDA3937_RS03615 0.18 +2.5 798,700 + DDA3937_RS03615 0.31 +0.1 798,700 + DDA3937_RS03615 0.31 -1.4 798,700 + DDA3937_RS03615 0.31 -1.2 798,700 + DDA3937_RS03615 0.31 +1.3 798,700 + DDA3937_RS03615 0.31 +2.2 798,700 + DDA3937_RS03615 0.31 +1.6 798,701 - DDA3937_RS03615 0.31 -1.7 798,701 - DDA3937_RS03615 0.31 +0.0 798,701 - DDA3937_RS03615 0.31 +0.1 798,752 - DDA3937_RS03615 0.44 -1.7 798,752 - DDA3937_RS03615 0.44 +0.1 798,800 + DDA3937_RS03615 0.56 +0.0 798,801 - DDA3937_RS03615 0.56 +1.1 798,801 - DDA3937_RS03615 0.56 +1.6 798,801 - DDA3937_RS03615 0.56 +0.5 798,877 + DDA3937_RS03615 0.76 +0.2 798,877 + DDA3937_RS03615 0.76 +1.6 798,878 - DDA3937_RS03615 0.76 -0.4 798,970 - +0.4 798,992 - -5.1 799,009 + -2.2 799,141 - DDA3937_RS03620 0.54 -2.7 799,141 - DDA3937_RS03620 0.54 -2.0 799,207 + DDA3937_RS03620 0.77 -2.1 799,208 - DDA3937_RS03620 0.77 +1.6 799,208 - DDA3937_RS03620 0.77 -0.4 799,208 - DDA3937_RS03620 0.77 -1.9
Or see this region's nucleotide sequence