Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03540 and DDA3937_RS03545 are separated by 453 nucleotides DDA3937_RS03545 and DDA3937_RS03550 are separated by 178 nucleotides
DDA3937_RS03540: DDA3937_RS03540 - MFS transporter, at 778,585 to 780,111
_RS03540
DDA3937_RS03545: DDA3937_RS03545 - helix-turn-helix transcriptional regulator, at 780,565 to 780,774
_RS03545
DDA3937_RS03550: DDA3937_RS03550 - fructuronate reductase, at 780,953 to 782,449
_RS03550
Position (kb) 780
781 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 779.571 kb on - strand, within DDA3937_RS03540 at 779.600 kb on + strand, within DDA3937_RS03540 at 779.600 kb on + strand, within DDA3937_RS03540 at 779.601 kb on - strand, within DDA3937_RS03540 at 779.601 kb on - strand, within DDA3937_RS03540 at 779.750 kb on + strand, within DDA3937_RS03540 at 779.750 kb on + strand, within DDA3937_RS03540 at 779.751 kb on - strand, within DDA3937_RS03540 at 779.771 kb on + strand, within DDA3937_RS03540 at 779.771 kb on + strand, within DDA3937_RS03540 at 779.771 kb on + strand, within DDA3937_RS03540 at 779.771 kb on + strand, within DDA3937_RS03540 at 779.771 kb on + strand, within DDA3937_RS03540 at 779.771 kb on + strand, within DDA3937_RS03540 at 779.771 kb on + strand, within DDA3937_RS03540 at 779.771 kb on + strand, within DDA3937_RS03540 at 779.771 kb on + strand, within DDA3937_RS03540 at 779.772 kb on - strand, within DDA3937_RS03540 at 779.772 kb on - strand, within DDA3937_RS03540 at 779.772 kb on - strand, within DDA3937_RS03540 at 779.772 kb on - strand, within DDA3937_RS03540 at 779.772 kb on - strand, within DDA3937_RS03540 at 779.772 kb on - strand, within DDA3937_RS03540 at 779.772 kb on - strand, within DDA3937_RS03540 at 779.772 kb on - strand, within DDA3937_RS03540 at 779.772 kb on - strand, within DDA3937_RS03540 at 779.772 kb on - strand, within DDA3937_RS03540 at 779.783 kb on + strand, within DDA3937_RS03540 at 779.783 kb on + strand, within DDA3937_RS03540 at 779.783 kb on + strand, within DDA3937_RS03540 at 779.783 kb on + strand, within DDA3937_RS03540 at 779.784 kb on - strand, within DDA3937_RS03540 at 779.784 kb on - strand, within DDA3937_RS03540 at 779.784 kb on - strand, within DDA3937_RS03540 at 779.784 kb on - strand, within DDA3937_RS03540 at 779.784 kb on - strand, within DDA3937_RS03540 at 779.784 kb on - strand, within DDA3937_RS03540 at 779.784 kb on - strand, within DDA3937_RS03540 at 779.784 kb on - strand, within DDA3937_RS03540 at 779.786 kb on + strand, within DDA3937_RS03540 at 779.787 kb on - strand, within DDA3937_RS03540 at 779.787 kb on - strand, within DDA3937_RS03540 at 779.787 kb on - strand, within DDA3937_RS03540 at 779.897 kb on + strand, within DDA3937_RS03540 at 779.898 kb on - strand, within DDA3937_RS03540 at 779.915 kb on + strand, within DDA3937_RS03540 at 779.915 kb on + strand, within DDA3937_RS03540 at 779.915 kb on + strand, within DDA3937_RS03540 at 779.915 kb on + strand, within DDA3937_RS03540 at 779.915 kb on + strand, within DDA3937_RS03540 at 779.916 kb on - strand, within DDA3937_RS03540 at 779.916 kb on - strand, within DDA3937_RS03540 at 779.916 kb on - strand, within DDA3937_RS03540 at 779.916 kb on - strand, within DDA3937_RS03540 at 779.916 kb on - strand, within DDA3937_RS03540 at 779.916 kb on - strand, within DDA3937_RS03540 at 779.953 kb on - strand, within DDA3937_RS03540 at 780.008 kb on + strand at 780.008 kb on + strand at 780.008 kb on + strand at 780.008 kb on + strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.014 kb on + strand at 780.015 kb on - strand at 780.015 kb on - strand at 780.015 kb on - strand at 780.033 kb on + strand at 780.033 kb on + strand at 780.033 kb on + strand at 780.034 kb on - strand at 780.034 kb on - strand at 780.056 kb on - strand at 780.105 kb on + strand at 780.106 kb on - strand at 780.106 kb on - strand at 780.200 kb on + strand at 780.200 kb on + strand at 780.200 kb on + strand at 780.201 kb on - strand at 780.201 kb on - strand at 780.226 kb on - strand at 780.226 kb on - strand at 780.228 kb on + strand at 780.229 kb on - strand at 780.256 kb on - strand at 780.280 kb on + strand at 780.330 kb on + strand at 780.387 kb on + strand at 780.387 kb on + strand at 780.387 kb on + strand at 780.388 kb on - strand at 780.429 kb on + strand at 780.429 kb on + strand at 780.430 kb on - strand at 780.430 kb on - strand at 780.430 kb on - strand at 780.502 kb on + strand at 780.502 kb on + strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.525 kb on - strand at 780.525 kb on - strand at 780.554 kb on + strand at 780.554 kb on + strand at 780.702 kb on + strand, within DDA3937_RS03545 at 780.702 kb on + strand, within DDA3937_RS03545 at 780.702 kb on + strand, within DDA3937_RS03545 at 780.703 kb on - strand, within DDA3937_RS03545 at 780.703 kb on - strand, within DDA3937_RS03545 at 780.703 kb on - strand, within DDA3937_RS03545 at 780.716 kb on + strand, within DDA3937_RS03545 at 780.757 kb on + strand at 780.757 kb on + strand at 780.757 kb on + strand at 780.758 kb on - strand at 780.807 kb on - strand at 780.909 kb on + strand at 780.909 kb on + strand at 780.910 kb on - strand at 780.910 kb on - strand at 781.012 kb on - strand at 781.118 kb on - strand, within DDA3937_RS03550 at 781.200 kb on + strand, within DDA3937_RS03550 at 781.200 kb on + strand, within DDA3937_RS03550 at 781.364 kb on + strand, within DDA3937_RS03550 at 781.365 kb on - strand, within DDA3937_RS03550 at 781.378 kb on - strand, within DDA3937_RS03550 at 781.471 kb on + strand, within DDA3937_RS03550 at 781.477 kb on + strand, within DDA3937_RS03550 at 781.477 kb on + strand, within DDA3937_RS03550 at 781.477 kb on + strand, within DDA3937_RS03550 at 781.477 kb on + strand, within DDA3937_RS03550 at 781.478 kb on - strand, within DDA3937_RS03550 at 781.478 kb on - strand, within DDA3937_RS03550 at 781.478 kb on - strand, within DDA3937_RS03550 at 781.478 kb on - strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.484 kb on - strand, within DDA3937_RS03550 at 781.484 kb on - strand at 781.484 kb on - strand, within DDA3937_RS03550 at 781.492 kb on - strand, within DDA3937_RS03550 at 781.504 kb on - strand, within DDA3937_RS03550 at 781.512 kb on + strand, within DDA3937_RS03550 at 781.512 kb on + strand, within DDA3937_RS03550 at 781.513 kb on - strand, within DDA3937_RS03550 at 781.538 kb on - strand, within DDA3937_RS03550 at 781.630 kb on + strand, within DDA3937_RS03550 at 781.630 kb on + strand, within DDA3937_RS03550 at 781.631 kb on - strand, within DDA3937_RS03550 at 781.631 kb on - strand, within DDA3937_RS03550 at 781.631 kb on - strand at 781.637 kb on + strand, within DDA3937_RS03550 at 781.637 kb on + strand, within DDA3937_RS03550 at 781.637 kb on + strand, within DDA3937_RS03550 at 781.637 kb on + strand, within DDA3937_RS03550 at 781.637 kb on + strand, within DDA3937_RS03550 at 781.638 kb on - strand, within DDA3937_RS03550 at 781.638 kb on - strand, within DDA3937_RS03550 at 781.638 kb on - strand at 781.638 kb on - strand, within DDA3937_RS03550 at 781.638 kb on - strand, within DDA3937_RS03550 at 781.638 kb on - strand, within DDA3937_RS03550 at 781.638 kb on - strand, within DDA3937_RS03550
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 779,571 - DDA3937_RS03540 0.65 +0.3 779,600 + DDA3937_RS03540 0.66 -0.3 779,600 + DDA3937_RS03540 0.66 +1.0 779,601 - DDA3937_RS03540 0.67 +2.0 779,601 - DDA3937_RS03540 0.67 -2.1 779,750 + DDA3937_RS03540 0.76 +1.2 779,750 + DDA3937_RS03540 0.76 +0.7 779,751 - DDA3937_RS03540 0.76 +0.1 779,771 + DDA3937_RS03540 0.78 +1.8 779,771 + DDA3937_RS03540 0.78 -1.9 779,771 + DDA3937_RS03540 0.78 -0.2 779,771 + DDA3937_RS03540 0.78 -0.4 779,771 + DDA3937_RS03540 0.78 +0.2 779,771 + DDA3937_RS03540 0.78 +0.2 779,771 + DDA3937_RS03540 0.78 -1.7 779,771 + DDA3937_RS03540 0.78 -2.5 779,771 + DDA3937_RS03540 0.78 +2.2 779,772 - DDA3937_RS03540 0.78 -1.7 779,772 - DDA3937_RS03540 0.78 -2.9 779,772 - DDA3937_RS03540 0.78 +0.1 779,772 - DDA3937_RS03540 0.78 +0.9 779,772 - DDA3937_RS03540 0.78 -0.4 779,772 - DDA3937_RS03540 0.78 -1.5 779,772 - DDA3937_RS03540 0.78 +0.4 779,772 - DDA3937_RS03540 0.78 +0.1 779,772 - DDA3937_RS03540 0.78 +0.0 779,772 - DDA3937_RS03540 0.78 +3.2 779,783 + DDA3937_RS03540 0.78 -0.4 779,783 + DDA3937_RS03540 0.78 +1.5 779,783 + DDA3937_RS03540 0.78 -1.8 779,783 + DDA3937_RS03540 0.78 -0.3 779,784 - DDA3937_RS03540 0.79 +0.2 779,784 - DDA3937_RS03540 0.79 +0.2 779,784 - DDA3937_RS03540 0.79 +0.4 779,784 - DDA3937_RS03540 0.79 +0.7 779,784 - DDA3937_RS03540 0.79 -2.1 779,784 - DDA3937_RS03540 0.79 +0.3 779,784 - DDA3937_RS03540 0.79 -0.5 779,784 - DDA3937_RS03540 0.79 +0.1 779,786 + DDA3937_RS03540 0.79 +2.2 779,787 - DDA3937_RS03540 0.79 -0.3 779,787 - DDA3937_RS03540 0.79 +0.4 779,787 - DDA3937_RS03540 0.79 -2.9 779,897 + DDA3937_RS03540 0.86 -1.5 779,898 - DDA3937_RS03540 0.86 -0.5 779,915 + DDA3937_RS03540 0.87 -0.1 779,915 + DDA3937_RS03540 0.87 +0.7 779,915 + DDA3937_RS03540 0.87 +4.3 779,915 + DDA3937_RS03540 0.87 +0.0 779,915 + DDA3937_RS03540 0.87 -3.3 779,916 - DDA3937_RS03540 0.87 +2.0 779,916 - DDA3937_RS03540 0.87 -2.1 779,916 - DDA3937_RS03540 0.87 -1.3 779,916 - DDA3937_RS03540 0.87 -1.5 779,916 - DDA3937_RS03540 0.87 -2.0 779,916 - DDA3937_RS03540 0.87 -1.3 779,953 - DDA3937_RS03540 0.90 +1.2 780,008 + +1.1 780,008 + -3.6 780,008 + +0.1 780,008 + -1.3 780,009 - -1.0 780,009 - -1.2 780,009 - -0.5 780,009 - -0.9 780,009 - -0.8 780,009 - -1.3 780,009 - -1.7 780,009 - -2.0 780,014 + -2.0 780,015 - -1.5 780,015 - -0.8 780,015 - -0.7 780,033 + -0.3 780,033 + -1.2 780,033 + +2.0 780,034 - -0.5 780,034 - -0.7 780,056 - -2.3 780,105 + -0.8 780,106 - -1.1 780,106 - -1.5 780,200 + +0.6 780,200 + +1.2 780,200 + -1.3 780,201 - +0.2 780,201 - +1.1 780,226 - -0.6 780,226 - -2.2 780,228 + -2.0 780,229 - -3.5 780,256 - -0.8 780,280 + -0.0 780,330 + +0.7 780,387 + -1.7 780,387 + +0.9 780,387 + +1.7 780,388 - -1.6 780,429 + +0.5 780,429 + -1.2 780,430 - -0.9 780,430 - -0.4 780,430 - -1.2 780,502 + +0.1 780,502 + -3.4 780,524 + -1.9 780,524 + +2.3 780,524 + +0.7 780,524 + -0.5 780,524 + -1.7 780,524 + -2.3 780,524 + +0.2 780,525 - -3.1 780,525 - +0.1 780,554 + +0.3 780,554 + +0.3 780,702 + DDA3937_RS03545 0.65 -0.9 780,702 + DDA3937_RS03545 0.65 +1.3 780,702 + DDA3937_RS03545 0.65 -0.3 780,703 - DDA3937_RS03545 0.66 -3.6 780,703 - DDA3937_RS03545 0.66 -0.9 780,703 - DDA3937_RS03545 0.66 -1.5 780,716 + DDA3937_RS03545 0.72 -1.7 780,757 + -1.7 780,757 + -0.3 780,757 + -1.3 780,758 - +0.8 780,807 - +1.5 780,909 + +0.5 780,909 + +0.4 780,910 - -2.0 780,910 - -1.2 781,012 - +0.0 781,118 - DDA3937_RS03550 0.11 -2.5 781,200 + DDA3937_RS03550 0.16 -1.8 781,200 + DDA3937_RS03550 0.16 -1.2 781,364 + DDA3937_RS03550 0.27 -3.1 781,365 - DDA3937_RS03550 0.28 +1.5 781,378 - DDA3937_RS03550 0.28 -2.2 781,471 + DDA3937_RS03550 0.35 +0.4 781,477 + DDA3937_RS03550 0.35 +0.4 781,477 + DDA3937_RS03550 0.35 -3.4 781,477 + DDA3937_RS03550 0.35 +2.9 781,477 + DDA3937_RS03550 0.35 -1.4 781,478 - DDA3937_RS03550 0.35 +1.3 781,478 - DDA3937_RS03550 0.35 -2.9 781,478 - DDA3937_RS03550 0.35 +0.5 781,478 - DDA3937_RS03550 0.35 -0.0 781,483 + DDA3937_RS03550 0.35 -0.7 781,483 + DDA3937_RS03550 0.35 -0.5 781,483 + DDA3937_RS03550 0.35 +1.4 781,483 + DDA3937_RS03550 0.35 -0.2 781,483 + DDA3937_RS03550 0.35 -0.8 781,483 + DDA3937_RS03550 0.35 +0.4 781,483 + DDA3937_RS03550 0.35 -1.2 781,483 + DDA3937_RS03550 0.35 +1.9 781,484 - DDA3937_RS03550 0.35 +1.0 781,484 - -0.4 781,484 - DDA3937_RS03550 0.35 -2.4 781,492 - DDA3937_RS03550 0.36 -1.3 781,504 - DDA3937_RS03550 0.37 +0.6 781,512 + DDA3937_RS03550 0.37 -2.1 781,512 + DDA3937_RS03550 0.37 -2.7 781,513 - DDA3937_RS03550 0.37 +1.1 781,538 - DDA3937_RS03550 0.39 +1.6 781,630 + DDA3937_RS03550 0.45 -2.5 781,630 + DDA3937_RS03550 0.45 -2.4 781,631 - DDA3937_RS03550 0.45 +1.0 781,631 - DDA3937_RS03550 0.45 +0.8 781,631 - +1.6 781,637 + DDA3937_RS03550 0.46 -0.3 781,637 + DDA3937_RS03550 0.46 +0.5 781,637 + DDA3937_RS03550 0.46 +2.1 781,637 + DDA3937_RS03550 0.46 -0.6 781,637 + DDA3937_RS03550 0.46 -0.9 781,638 - DDA3937_RS03550 0.46 -0.2 781,638 - DDA3937_RS03550 0.46 -2.6 781,638 - +0.6 781,638 - DDA3937_RS03550 0.46 -2.9 781,638 - DDA3937_RS03550 0.46 -0.6 781,638 - DDA3937_RS03550 0.46 +0.3 781,638 - DDA3937_RS03550 0.46 +1.5
Or see this region's nucleotide sequence