Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03495 and DDA3937_RS03500 are separated by 126 nucleotides DDA3937_RS03500 and DDA3937_RS03505 are separated by 86 nucleotides
DDA3937_RS03495: DDA3937_RS03495 - mandelate racemase family protein, at 768,664 to 769,818
_RS03495
DDA3937_RS03500: DDA3937_RS03500 - ABC transporter substrate-binding protein, at 769,945 to 771,555
_RS03500
DDA3937_RS03505: DDA3937_RS03505 - ABC transporter permease, at 771,642 to 772,700
_RS03505
Position (kb) 769
770
771
772 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 769.024 kb on + strand, within DDA3937_RS03495 at 769.024 kb on + strand, within DDA3937_RS03495 at 769.024 kb on + strand, within DDA3937_RS03495 at 769.024 kb on + strand, within DDA3937_RS03495 at 769.024 kb on + strand, within DDA3937_RS03495 at 769.025 kb on - strand, within DDA3937_RS03495 at 769.025 kb on - strand, within DDA3937_RS03495 at 769.026 kb on + strand, within DDA3937_RS03495 at 769.315 kb on + strand, within DDA3937_RS03495 at 769.316 kb on - strand, within DDA3937_RS03495 at 769.316 kb on - strand, within DDA3937_RS03495 at 769.316 kb on - strand, within DDA3937_RS03495 at 769.776 kb on + strand at 769.776 kb on + strand at 769.776 kb on + strand at 769.776 kb on + strand at 769.816 kb on + strand at 769.858 kb on - strand at 769.873 kb on + strand at 769.874 kb on - strand at 769.921 kb on + strand at 769.921 kb on + strand at 769.921 kb on + strand at 769.921 kb on + strand at 769.922 kb on - strand at 769.922 kb on - strand at 769.922 kb on - strand at 769.944 kb on - strand at 769.961 kb on + strand at 769.961 kb on + strand at 769.961 kb on + strand at 769.961 kb on + strand at 769.962 kb on - strand at 769.962 kb on - strand at 769.992 kb on + strand at 769.992 kb on + strand at 769.993 kb on - strand at 769.993 kb on - strand at 770.117 kb on + strand, within DDA3937_RS03500 at 770.117 kb on + strand, within DDA3937_RS03500 at 770.118 kb on - strand, within DDA3937_RS03500 at 770.131 kb on + strand, within DDA3937_RS03500 at 770.132 kb on - strand, within DDA3937_RS03500 at 770.178 kb on - strand, within DDA3937_RS03500 at 770.430 kb on + strand, within DDA3937_RS03500 at 770.445 kb on + strand, within DDA3937_RS03500 at 770.445 kb on + strand, within DDA3937_RS03500 at 770.445 kb on + strand, within DDA3937_RS03500 at 770.445 kb on + strand, within DDA3937_RS03500 at 770.446 kb on - strand, within DDA3937_RS03500 at 770.446 kb on - strand, within DDA3937_RS03500 at 770.446 kb on - strand, within DDA3937_RS03500 at 770.452 kb on + strand, within DDA3937_RS03500 at 770.452 kb on + strand, within DDA3937_RS03500 at 770.764 kb on - strand, within DDA3937_RS03500 at 770.772 kb on + strand, within DDA3937_RS03500 at 770.812 kb on + strand, within DDA3937_RS03500 at 770.812 kb on + strand, within DDA3937_RS03500 at 770.812 kb on + strand, within DDA3937_RS03500 at 770.813 kb on - strand, within DDA3937_RS03500 at 770.815 kb on + strand, within DDA3937_RS03500 at 770.815 kb on + strand, within DDA3937_RS03500 at 770.815 kb on + strand, within DDA3937_RS03500 at 770.816 kb on - strand, within DDA3937_RS03500 at 770.816 kb on - strand, within DDA3937_RS03500 at 770.816 kb on - strand, within DDA3937_RS03500 at 770.842 kb on + strand, within DDA3937_RS03500 at 770.842 kb on + strand, within DDA3937_RS03500 at 770.879 kb on - strand, within DDA3937_RS03500 at 770.988 kb on + strand, within DDA3937_RS03500 at 770.988 kb on + strand, within DDA3937_RS03500 at 770.988 kb on + strand, within DDA3937_RS03500 at 770.988 kb on + strand, within DDA3937_RS03500 at 770.989 kb on - strand, within DDA3937_RS03500 at 770.989 kb on - strand, within DDA3937_RS03500 at 770.989 kb on - strand, within DDA3937_RS03500 at 770.989 kb on - strand, within DDA3937_RS03500 at 770.989 kb on - strand, within DDA3937_RS03500 at 770.989 kb on - strand, within DDA3937_RS03500 at 771.169 kb on + strand, within DDA3937_RS03500 at 771.169 kb on + strand, within DDA3937_RS03500 at 771.170 kb on - strand, within DDA3937_RS03500 at 771.170 kb on - strand, within DDA3937_RS03500 at 771.227 kb on + strand, within DDA3937_RS03500 at 771.227 kb on + strand at 771.228 kb on - strand, within DDA3937_RS03500 at 771.228 kb on - strand, within DDA3937_RS03500 at 771.228 kb on - strand, within DDA3937_RS03500 at 771.265 kb on + strand, within DDA3937_RS03500 at 771.265 kb on + strand, within DDA3937_RS03500 at 771.266 kb on - strand, within DDA3937_RS03500 at 771.329 kb on - strand, within DDA3937_RS03500 at 771.329 kb on - strand, within DDA3937_RS03500 at 771.329 kb on - strand, within DDA3937_RS03500 at 771.329 kb on - strand, within DDA3937_RS03500 at 771.329 kb on - strand, within DDA3937_RS03500 at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.400 kb on + strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.401 kb on - strand at 771.421 kb on + strand at 771.422 kb on - strand at 771.422 kb on - strand at 771.433 kb on + strand at 771.444 kb on + strand at 771.445 kb on - strand at 771.499 kb on + strand at 771.499 kb on + strand at 771.499 kb on + strand at 771.499 kb on + strand at 771.500 kb on - strand at 771.500 kb on - strand at 771.500 kb on - strand at 771.500 kb on - strand at 771.500 kb on - strand at 771.500 kb on - strand at 771.541 kb on + strand at 771.541 kb on + strand at 771.541 kb on + strand at 771.541 kb on + strand at 771.541 kb on + strand at 771.541 kb on + strand at 771.541 kb on + strand at 771.542 kb on - strand at 771.542 kb on - strand at 771.553 kb on + strand at 771.554 kb on - strand at 771.680 kb on + strand at 771.719 kb on - strand at 771.719 kb on - strand at 771.748 kb on + strand, within DDA3937_RS03505 at 771.748 kb on + strand, within DDA3937_RS03505 at 771.749 kb on - strand, within DDA3937_RS03505 at 771.749 kb on - strand, within DDA3937_RS03505 at 771.834 kb on + strand, within DDA3937_RS03505 at 771.834 kb on + strand, within DDA3937_RS03505 at 771.835 kb on - strand, within DDA3937_RS03505 at 771.846 kb on + strand, within DDA3937_RS03505 at 771.846 kb on + strand, within DDA3937_RS03505 at 771.876 kb on + strand, within DDA3937_RS03505 at 771.877 kb on - strand, within DDA3937_RS03505 at 771.894 kb on + strand, within DDA3937_RS03505 at 772.010 kb on + strand, within DDA3937_RS03505 at 772.080 kb on + strand, within DDA3937_RS03505 at 772.080 kb on + strand, within DDA3937_RS03505 at 772.080 kb on + strand, within DDA3937_RS03505 at 772.080 kb on + strand, within DDA3937_RS03505 at 772.080 kb on + strand, within DDA3937_RS03505 at 772.080 kb on + strand, within DDA3937_RS03505 at 772.081 kb on - strand at 772.081 kb on - strand, within DDA3937_RS03505 at 772.081 kb on - strand, within DDA3937_RS03505 at 772.081 kb on - strand, within DDA3937_RS03505 at 772.081 kb on - strand, within DDA3937_RS03505 at 772.081 kb on - strand, within DDA3937_RS03505 at 772.094 kb on + strand, within DDA3937_RS03505 at 772.094 kb on + strand, within DDA3937_RS03505 at 772.095 kb on - strand, within DDA3937_RS03505 at 772.095 kb on - strand, within DDA3937_RS03505 at 772.158 kb on + strand, within DDA3937_RS03505 at 772.158 kb on + strand, within DDA3937_RS03505 at 772.158 kb on + strand, within DDA3937_RS03505 at 772.158 kb on + strand, within DDA3937_RS03505 at 772.158 kb on + strand, within DDA3937_RS03505 at 772.158 kb on + strand, within DDA3937_RS03505 at 772.159 kb on - strand, within DDA3937_RS03505 at 772.159 kb on - strand, within DDA3937_RS03505 at 772.159 kb on - strand, within DDA3937_RS03505 at 772.159 kb on - strand, within DDA3937_RS03505 at 772.159 kb on - strand, within DDA3937_RS03505 at 772.207 kb on - strand, within DDA3937_RS03505 at 772.277 kb on - strand, within DDA3937_RS03505 at 772.341 kb on + strand, within DDA3937_RS03505 at 772.342 kb on - strand, within DDA3937_RS03505 at 772.342 kb on - strand, within DDA3937_RS03505 at 772.342 kb on - strand, within DDA3937_RS03505 at 772.352 kb on + strand, within DDA3937_RS03505 at 772.392 kb on + strand, within DDA3937_RS03505 at 772.392 kb on + strand, within DDA3937_RS03505 at 772.393 kb on - strand, within DDA3937_RS03505 at 772.393 kb on - strand, within DDA3937_RS03505 at 772.393 kb on - strand, within DDA3937_RS03505 at 772.469 kb on - strand, within DDA3937_RS03505 at 772.498 kb on - strand, within DDA3937_RS03505 at 772.523 kb on - strand, within DDA3937_RS03505 at 772.526 kb on - strand, within DDA3937_RS03505
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 769,024 + DDA3937_RS03495 0.31 -3.0 769,024 + DDA3937_RS03495 0.31 +0.3 769,024 + DDA3937_RS03495 0.31 +2.3 769,024 + DDA3937_RS03495 0.31 -2.0 769,024 + DDA3937_RS03495 0.31 +0.3 769,025 - DDA3937_RS03495 0.31 -0.1 769,025 - DDA3937_RS03495 0.31 +1.3 769,026 + DDA3937_RS03495 0.31 -0.7 769,315 + DDA3937_RS03495 0.56 +1.0 769,316 - DDA3937_RS03495 0.56 -1.9 769,316 - DDA3937_RS03495 0.56 -2.7 769,316 - DDA3937_RS03495 0.56 -3.0 769,776 + +0.1 769,776 + -1.9 769,776 + -1.0 769,776 + +0.1 769,816 + -1.5 769,858 - +1.1 769,873 + -2.9 769,874 - +0.3 769,921 + -1.9 769,921 + -0.1 769,921 + -0.6 769,921 + -1.7 769,922 - -3.4 769,922 - +1.7 769,922 - -1.5 769,944 - -0.2 769,961 + +1.0 769,961 + +0.4 769,961 + +0.1 769,961 + -0.1 769,962 - -0.1 769,962 - -0.3 769,992 + +1.9 769,992 + -2.0 769,993 - -3.0 769,993 - +1.2 770,117 + DDA3937_RS03500 0.11 -0.8 770,117 + DDA3937_RS03500 0.11 -0.9 770,118 - DDA3937_RS03500 0.11 -3.3 770,131 + DDA3937_RS03500 0.12 -1.6 770,132 - DDA3937_RS03500 0.12 -2.2 770,178 - DDA3937_RS03500 0.14 -2.5 770,430 + DDA3937_RS03500 0.30 -2.1 770,445 + DDA3937_RS03500 0.31 -0.9 770,445 + DDA3937_RS03500 0.31 -1.6 770,445 + DDA3937_RS03500 0.31 +1.4 770,445 + DDA3937_RS03500 0.31 -2.1 770,446 - DDA3937_RS03500 0.31 -2.2 770,446 - DDA3937_RS03500 0.31 -1.5 770,446 - DDA3937_RS03500 0.31 -0.8 770,452 + DDA3937_RS03500 0.31 +0.9 770,452 + DDA3937_RS03500 0.31 +2.2 770,764 - DDA3937_RS03500 0.51 -1.6 770,772 + DDA3937_RS03500 0.51 -2.2 770,812 + DDA3937_RS03500 0.54 -0.4 770,812 + DDA3937_RS03500 0.54 -1.4 770,812 + DDA3937_RS03500 0.54 +0.3 770,813 - DDA3937_RS03500 0.54 +3.2 770,815 + DDA3937_RS03500 0.54 -0.4 770,815 + DDA3937_RS03500 0.54 -2.2 770,815 + DDA3937_RS03500 0.54 +0.7 770,816 - DDA3937_RS03500 0.54 -1.6 770,816 - DDA3937_RS03500 0.54 -0.6 770,816 - DDA3937_RS03500 0.54 -2.2 770,842 + DDA3937_RS03500 0.56 -1.9 770,842 + DDA3937_RS03500 0.56 -1.5 770,879 - DDA3937_RS03500 0.58 -1.8 770,988 + DDA3937_RS03500 0.65 +0.1 770,988 + DDA3937_RS03500 0.65 +0.7 770,988 + DDA3937_RS03500 0.65 -1.9 770,988 + DDA3937_RS03500 0.65 +0.3 770,989 - DDA3937_RS03500 0.65 -2.1 770,989 - DDA3937_RS03500 0.65 +1.5 770,989 - DDA3937_RS03500 0.65 -1.2 770,989 - DDA3937_RS03500 0.65 -1.0 770,989 - DDA3937_RS03500 0.65 +1.0 770,989 - DDA3937_RS03500 0.65 -2.2 771,169 + DDA3937_RS03500 0.76 +2.9 771,169 + DDA3937_RS03500 0.76 +0.4 771,170 - DDA3937_RS03500 0.76 -1.3 771,170 - DDA3937_RS03500 0.76 -2.0 771,227 + DDA3937_RS03500 0.80 -2.0 771,227 + +0.7 771,228 - DDA3937_RS03500 0.80 -2.2 771,228 - DDA3937_RS03500 0.80 -0.5 771,228 - DDA3937_RS03500 0.80 -2.0 771,265 + DDA3937_RS03500 0.82 -0.4 771,265 + DDA3937_RS03500 0.82 -0.3 771,266 - DDA3937_RS03500 0.82 +0.4 771,329 - DDA3937_RS03500 0.86 -3.1 771,329 - DDA3937_RS03500 0.86 -1.5 771,329 - DDA3937_RS03500 0.86 -0.4 771,329 - DDA3937_RS03500 0.86 -2.5 771,329 - DDA3937_RS03500 0.86 +1.9 771,400 + -2.2 771,400 + +0.5 771,400 + -0.9 771,400 + -1.1 771,400 + +1.4 771,400 + -1.9 771,400 + +1.7 771,400 + -0.5 771,400 + -1.9 771,401 - +0.7 771,401 - +1.7 771,401 - -1.6 771,401 - -2.4 771,401 - +0.0 771,401 - -2.0 771,401 - +0.7 771,401 - +0.4 771,401 - -1.6 771,401 - -0.5 771,401 - -1.3 771,421 + -2.1 771,422 - +0.4 771,422 - -1.6 771,433 + +1.5 771,444 + -2.2 771,445 - -2.0 771,499 + -1.1 771,499 + -0.8 771,499 + +0.2 771,499 + +0.6 771,500 - -2.6 771,500 - -0.9 771,500 - -1.1 771,500 - +0.2 771,500 - -0.4 771,500 - -1.8 771,541 + -2.8 771,541 + -1.8 771,541 + +0.4 771,541 + -2.1 771,541 + -1.4 771,541 + -2.2 771,541 + +0.9 771,542 - +0.2 771,542 - -1.2 771,553 + +0.8 771,554 - -1.4 771,680 + -1.1 771,719 - +0.4 771,719 - -1.0 771,748 + DDA3937_RS03505 0.10 -1.0 771,748 + DDA3937_RS03505 0.10 +0.2 771,749 - DDA3937_RS03505 0.10 -1.4 771,749 - DDA3937_RS03505 0.10 +0.2 771,834 + DDA3937_RS03505 0.18 +0.7 771,834 + DDA3937_RS03505 0.18 -0.2 771,835 - DDA3937_RS03505 0.18 -2.0 771,846 + DDA3937_RS03505 0.19 -1.8 771,846 + DDA3937_RS03505 0.19 -1.5 771,876 + DDA3937_RS03505 0.22 -0.1 771,877 - DDA3937_RS03505 0.22 -0.5 771,894 + DDA3937_RS03505 0.24 +2.8 772,010 + DDA3937_RS03505 0.35 -1.3 772,080 + DDA3937_RS03505 0.41 -0.9 772,080 + DDA3937_RS03505 0.41 +2.0 772,080 + DDA3937_RS03505 0.41 -3.1 772,080 + DDA3937_RS03505 0.41 -1.3 772,080 + DDA3937_RS03505 0.41 -3.8 772,080 + DDA3937_RS03505 0.41 +1.1 772,081 - +1.7 772,081 - DDA3937_RS03505 0.41 +0.1 772,081 - DDA3937_RS03505 0.41 -0.3 772,081 - DDA3937_RS03505 0.41 -1.6 772,081 - DDA3937_RS03505 0.41 +0.7 772,081 - DDA3937_RS03505 0.41 +1.7 772,094 + DDA3937_RS03505 0.43 -1.6 772,094 + DDA3937_RS03505 0.43 -0.8 772,095 - DDA3937_RS03505 0.43 -2.6 772,095 - DDA3937_RS03505 0.43 +0.1 772,158 + DDA3937_RS03505 0.49 -1.6 772,158 + DDA3937_RS03505 0.49 -2.0 772,158 + DDA3937_RS03505 0.49 -1.3 772,158 + DDA3937_RS03505 0.49 +0.7 772,158 + DDA3937_RS03505 0.49 +2.6 772,158 + DDA3937_RS03505 0.49 +0.2 772,159 - DDA3937_RS03505 0.49 -1.1 772,159 - DDA3937_RS03505 0.49 -1.5 772,159 - DDA3937_RS03505 0.49 -3.4 772,159 - DDA3937_RS03505 0.49 -0.7 772,159 - DDA3937_RS03505 0.49 +1.4 772,207 - DDA3937_RS03505 0.53 -0.9 772,277 - DDA3937_RS03505 0.60 -2.3 772,341 + DDA3937_RS03505 0.66 -1.6 772,342 - DDA3937_RS03505 0.66 -1.3 772,342 - DDA3937_RS03505 0.66 -1.0 772,342 - DDA3937_RS03505 0.66 -2.9 772,352 + DDA3937_RS03505 0.67 +0.7 772,392 + DDA3937_RS03505 0.71 -0.3 772,392 + DDA3937_RS03505 0.71 -0.3 772,393 - DDA3937_RS03505 0.71 -1.3 772,393 - DDA3937_RS03505 0.71 +0.7 772,393 - DDA3937_RS03505 0.71 +0.2 772,469 - DDA3937_RS03505 0.78 +0.4 772,498 - DDA3937_RS03505 0.81 +3.1 772,523 - DDA3937_RS03505 0.83 -2.3 772,526 - DDA3937_RS03505 0.83 +0.3
Or see this region's nucleotide sequence