Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03150 and DDA3937_RS03160 are separated by 628 nucleotides DDA3937_RS03160 and DDA3937_RS03165 are separated by 127 nucleotides
DDA3937_RS03150: DDA3937_RS03150 - purine-nucleoside phosphorylase, at 694,560 to 695,285
_RS03150
DDA3937_RS03160: DDA3937_RS03160 - VOC family protein, at 695,914 to 696,468
_RS03160
DDA3937_RS03165: DDA3937_RS03165 - LysR family transcriptional regulator, at 696,596 to 697,513
_RS03165
Position (kb) 695
696
697 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 694.923 kb on - strand, within DDA3937_RS03150 at 694.923 kb on - strand, within DDA3937_RS03150 at 695.040 kb on + strand, within DDA3937_RS03150 at 695.040 kb on + strand, within DDA3937_RS03150 at 695.040 kb on + strand, within DDA3937_RS03150 at 695.040 kb on + strand, within DDA3937_RS03150 at 695.041 kb on - strand, within DDA3937_RS03150 at 695.041 kb on - strand, within DDA3937_RS03150 at 695.118 kb on + strand, within DDA3937_RS03150 at 695.118 kb on + strand, within DDA3937_RS03150 at 695.125 kb on + strand, within DDA3937_RS03150 at 695.126 kb on - strand, within DDA3937_RS03150 at 695.270 kb on + strand at 695.296 kb on - strand at 695.296 kb on - strand at 695.298 kb on + strand at 695.298 kb on + strand at 695.298 kb on + strand at 695.298 kb on + strand at 695.298 kb on + strand at 695.298 kb on + strand at 695.299 kb on - strand at 695.299 kb on - strand at 695.299 kb on - strand at 695.306 kb on + strand at 695.353 kb on - strand at 695.353 kb on - strand at 695.353 kb on - strand at 695.353 kb on - strand at 695.353 kb on - strand at 695.357 kb on - strand at 695.663 kb on + strand at 695.663 kb on + strand at 695.663 kb on + strand at 695.663 kb on + strand at 695.718 kb on + strand at 695.718 kb on + strand at 695.719 kb on - strand at 695.719 kb on - strand at 695.788 kb on + strand at 695.788 kb on + strand at 695.798 kb on + strand at 695.875 kb on + strand at 695.876 kb on - strand at 696.051 kb on - strand, within DDA3937_RS03160 at 696.061 kb on + strand, within DDA3937_RS03160 at 696.061 kb on + strand, within DDA3937_RS03160 at 696.062 kb on - strand, within DDA3937_RS03160 at 696.062 kb on - strand, within DDA3937_RS03160 at 696.143 kb on + strand, within DDA3937_RS03160 at 696.143 kb on + strand at 696.421 kb on + strand at 696.518 kb on + strand at 696.518 kb on + strand at 696.518 kb on + strand at 696.536 kb on + strand at 696.537 kb on - strand at 696.821 kb on + strand, within DDA3937_RS03165 at 696.821 kb on + strand, within DDA3937_RS03165 at 696.822 kb on - strand, within DDA3937_RS03165 at 696.822 kb on - strand, within DDA3937_RS03165 at 696.822 kb on - strand, within DDA3937_RS03165 at 696.946 kb on + strand, within DDA3937_RS03165 at 696.947 kb on - strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.036 kb on + strand, within DDA3937_RS03165 at 697.036 kb on + strand, within DDA3937_RS03165 at 697.037 kb on - strand, within DDA3937_RS03165 at 697.095 kb on - strand, within DDA3937_RS03165 at 697.095 kb on - strand, within DDA3937_RS03165 at 697.116 kb on - strand, within DDA3937_RS03165 at 697.116 kb on - strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.214 kb on - strand, within DDA3937_RS03165 at 697.241 kb on - strand, within DDA3937_RS03165 at 697.241 kb on - strand, within DDA3937_RS03165 at 697.333 kb on + strand, within DDA3937_RS03165 at 697.333 kb on + strand, within DDA3937_RS03165 at 697.334 kb on - strand, within DDA3937_RS03165 at 697.347 kb on - strand, within DDA3937_RS03165 at 697.424 kb on - strand at 697.443 kb on + strand at 697.444 kb on - strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.458 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 694,923 - DDA3937_RS03150 0.50 +0.2 694,923 - DDA3937_RS03150 0.50 +3.7 695,040 + DDA3937_RS03150 0.66 +0.1 695,040 + DDA3937_RS03150 0.66 +2.6 695,040 + DDA3937_RS03150 0.66 +2.6 695,040 + DDA3937_RS03150 0.66 -1.2 695,041 - DDA3937_RS03150 0.66 +2.5 695,041 - DDA3937_RS03150 0.66 -1.5 695,118 + DDA3937_RS03150 0.77 -1.8 695,118 + DDA3937_RS03150 0.77 +1.2 695,125 + DDA3937_RS03150 0.78 -0.1 695,126 - DDA3937_RS03150 0.78 -2.5 695,270 + +1.1 695,296 - +0.4 695,296 - -0.3 695,298 + -0.2 695,298 + -1.6 695,298 + -0.3 695,298 + -0.7 695,298 + +1.0 695,298 + +0.9 695,299 - +0.1 695,299 - +1.0 695,299 - -0.7 695,306 + +1.0 695,353 - -1.7 695,353 - -3.7 695,353 - +1.5 695,353 - +1.7 695,353 - -0.4 695,357 - +1.7 695,663 + -0.9 695,663 + -0.1 695,663 + -1.5 695,663 + +1.1 695,718 + +2.6 695,718 + +1.3 695,719 - -1.1 695,719 - -2.4 695,788 + -1.3 695,788 + -3.0 695,798 + +1.5 695,875 + +0.4 695,876 - -0.6 696,051 - DDA3937_RS03160 0.25 -1.7 696,061 + DDA3937_RS03160 0.26 -2.1 696,061 + DDA3937_RS03160 0.26 -3.1 696,062 - DDA3937_RS03160 0.27 +3.1 696,062 - DDA3937_RS03160 0.27 +1.5 696,143 + DDA3937_RS03160 0.41 -1.1 696,143 + +4.4 696,421 + +1.5 696,518 + -2.2 696,518 + -2.3 696,518 + -0.9 696,536 + -1.1 696,537 - -0.6 696,821 + DDA3937_RS03165 0.25 -1.7 696,821 + DDA3937_RS03165 0.25 -2.0 696,822 - DDA3937_RS03165 0.25 -1.9 696,822 - DDA3937_RS03165 0.25 -1.4 696,822 - DDA3937_RS03165 0.25 -2.3 696,946 + DDA3937_RS03165 0.38 -0.5 696,947 - DDA3937_RS03165 0.38 -1.3 697,032 + DDA3937_RS03165 0.47 -2.9 697,032 + DDA3937_RS03165 0.47 +0.8 697,032 + DDA3937_RS03165 0.47 +0.4 697,032 + DDA3937_RS03165 0.47 -2.3 697,032 + DDA3937_RS03165 0.47 -1.7 697,032 + DDA3937_RS03165 0.47 -1.2 697,032 + DDA3937_RS03165 0.47 -0.5 697,033 - DDA3937_RS03165 0.48 +0.8 697,033 - DDA3937_RS03165 0.48 -1.2 697,033 - DDA3937_RS03165 0.48 +0.5 697,033 - DDA3937_RS03165 0.48 -1.1 697,033 - DDA3937_RS03165 0.48 -2.2 697,033 - DDA3937_RS03165 0.48 -1.3 697,033 - DDA3937_RS03165 0.48 -1.5 697,036 + DDA3937_RS03165 0.48 +1.3 697,036 + DDA3937_RS03165 0.48 -0.6 697,037 - DDA3937_RS03165 0.48 +0.9 697,095 - DDA3937_RS03165 0.54 +1.4 697,095 - DDA3937_RS03165 0.54 +0.1 697,116 - DDA3937_RS03165 0.57 -1.9 697,116 - DDA3937_RS03165 0.57 +0.7 697,178 + DDA3937_RS03165 0.63 +0.5 697,178 + DDA3937_RS03165 0.63 -2.6 697,178 + DDA3937_RS03165 0.63 -1.3 697,178 + DDA3937_RS03165 0.63 -2.7 697,178 + DDA3937_RS03165 0.63 +0.1 697,179 - DDA3937_RS03165 0.64 +0.5 697,179 - DDA3937_RS03165 0.64 +0.7 697,179 - DDA3937_RS03165 0.64 -0.7 697,179 - DDA3937_RS03165 0.64 -1.0 697,179 - DDA3937_RS03165 0.64 -1.5 697,214 - DDA3937_RS03165 0.67 -2.0 697,241 - DDA3937_RS03165 0.70 -0.7 697,241 - DDA3937_RS03165 0.70 -1.6 697,333 + DDA3937_RS03165 0.80 +2.2 697,333 + DDA3937_RS03165 0.80 -2.2 697,334 - DDA3937_RS03165 0.80 +0.1 697,347 - DDA3937_RS03165 0.82 +0.1 697,424 - -1.5 697,443 + -2.4 697,444 - +0.3 697,455 + -1.2 697,455 + +2.7 697,455 + +0.3 697,455 + -1.7 697,455 + -1.5 697,455 + -1.6 697,455 + -0.3 697,456 - +1.9 697,456 - +0.1 697,456 - -1.3 697,456 - +0.8 697,456 - -1.3 697,456 - -1.9 697,456 - -0.9 697,458 + +1.1
Or see this region's nucleotide sequence