Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02770 and DDA3937_RS02775 are separated by 109 nucleotides DDA3937_RS02775 and DDA3937_RS02780 are separated by 106 nucleotides
DDA3937_RS02770: DDA3937_RS02770 - pirin family protein, at 612,319 to 613,023
_RS02770
DDA3937_RS02775: DDA3937_RS02775 - LysR family transcriptional regulator, at 613,133 to 614,029
_RS02775
DDA3937_RS02780: DDA3937_RS02780 - glutathione S-transferase family protein, at 614,136 to 615,122
_RS02780
Position (kb) 613
614
615 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 612.205 kb on - strand at 612.285 kb on + strand at 612.340 kb on + strand at 612.340 kb on + strand at 612.341 kb on - strand at 612.372 kb on + strand at 612.419 kb on - strand, within DDA3937_RS02770 at 612.419 kb on - strand, within DDA3937_RS02770 at 612.460 kb on - strand, within DDA3937_RS02770 at 612.465 kb on - strand, within DDA3937_RS02770 at 612.465 kb on - strand, within DDA3937_RS02770 at 612.465 kb on - strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.479 kb on + strand, within DDA3937_RS02770 at 612.507 kb on + strand, within DDA3937_RS02770 at 612.507 kb on + strand, within DDA3937_RS02770 at 612.507 kb on + strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.605 kb on + strand, within DDA3937_RS02770 at 612.711 kb on + strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.723 kb on - strand, within DDA3937_RS02770 at 612.723 kb on - strand, within DDA3937_RS02770 at 612.848 kb on + strand, within DDA3937_RS02770 at 612.922 kb on + strand, within DDA3937_RS02770 at 612.923 kb on - strand, within DDA3937_RS02770 at 612.923 kb on - strand, within DDA3937_RS02770 at 612.923 kb on - strand, within DDA3937_RS02770 at 612.939 kb on - strand, within DDA3937_RS02770 at 612.959 kb on + strand at 612.959 kb on + strand at 612.960 kb on - strand at 612.960 kb on - strand at 612.981 kb on - strand at 613.014 kb on + strand at 613.015 kb on - strand at 613.015 kb on - strand at 613.026 kb on + strand at 613.026 kb on + strand at 613.044 kb on - strand at 613.050 kb on - strand at 613.060 kb on + strand at 613.060 kb on + strand at 613.060 kb on + strand at 613.060 kb on + strand at 613.060 kb on + strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.103 kb on + strand at 613.158 kb on + strand at 613.158 kb on + strand at 613.159 kb on - strand at 613.159 kb on - strand at 613.159 kb on - strand at 613.159 kb on - strand at 613.250 kb on + strand, within DDA3937_RS02775 at 613.250 kb on + strand, within DDA3937_RS02775 at 613.250 kb on + strand, within DDA3937_RS02775 at 613.251 kb on - strand, within DDA3937_RS02775 at 613.251 kb on - strand, within DDA3937_RS02775 at 613.251 kb on - strand, within DDA3937_RS02775 at 613.251 kb on - strand, within DDA3937_RS02775 at 613.251 kb on - strand, within DDA3937_RS02775 at 613.252 kb on + strand, within DDA3937_RS02775 at 613.252 kb on + strand, within DDA3937_RS02775 at 613.252 kb on + strand, within DDA3937_RS02775 at 613.253 kb on - strand, within DDA3937_RS02775 at 613.253 kb on - strand, within DDA3937_RS02775 at 613.253 kb on - strand, within DDA3937_RS02775 at 613.253 kb on - strand at 613.253 kb on - strand, within DDA3937_RS02775 at 613.253 kb on - strand, within DDA3937_RS02775 at 613.387 kb on + strand, within DDA3937_RS02775 at 613.488 kb on + strand, within DDA3937_RS02775 at 613.489 kb on - strand, within DDA3937_RS02775 at 613.627 kb on + strand, within DDA3937_RS02775 at 613.635 kb on - strand, within DDA3937_RS02775 at 613.650 kb on + strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.652 kb on + strand, within DDA3937_RS02775 at 613.652 kb on + strand, within DDA3937_RS02775 at 613.652 kb on + strand, within DDA3937_RS02775 at 613.652 kb on + strand, within DDA3937_RS02775 at 613.652 kb on + strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.779 kb on + strand, within DDA3937_RS02775 at 613.779 kb on + strand, within DDA3937_RS02775 at 613.779 kb on + strand, within DDA3937_RS02775 at 613.868 kb on + strand, within DDA3937_RS02775 at 613.868 kb on + strand, within DDA3937_RS02775 at 613.868 kb on + strand, within DDA3937_RS02775 at 613.914 kb on + strand, within DDA3937_RS02775 at 613.914 kb on + strand, within DDA3937_RS02775 at 613.915 kb on - strand, within DDA3937_RS02775 at 613.915 kb on - strand, within DDA3937_RS02775 at 613.915 kb on - strand, within DDA3937_RS02775 at 613.915 kb on - strand, within DDA3937_RS02775 at 613.928 kb on - strand, within DDA3937_RS02775 at 613.928 kb on - strand, within DDA3937_RS02775 at 614.013 kb on + strand at 614.013 kb on + strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.036 kb on + strand at 614.037 kb on - strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.087 kb on - strand at 614.087 kb on - strand at 614.088 kb on + strand at 614.088 kb on + strand at 614.088 kb on + strand at 614.089 kb on - strand at 614.106 kb on - strand at 614.132 kb on + strand at 614.138 kb on - strand at 614.197 kb on - strand at 614.222 kb on + strand at 614.222 kb on + strand at 614.222 kb on + strand at 614.222 kb on + strand at 614.222 kb on + strand at 614.222 kb on + strand at 614.223 kb on - strand at 614.223 kb on - strand at 614.223 kb on - strand at 614.236 kb on + strand, within DDA3937_RS02780 at 614.237 kb on - strand, within DDA3937_RS02780 at 614.274 kb on + strand, within DDA3937_RS02780 at 614.275 kb on - strand, within DDA3937_RS02780 at 614.275 kb on - strand, within DDA3937_RS02780 at 614.276 kb on + strand, within DDA3937_RS02780 at 614.276 kb on + strand, within DDA3937_RS02780 at 614.291 kb on - strand, within DDA3937_RS02780 at 614.305 kb on + strand, within DDA3937_RS02780 at 614.306 kb on - strand, within DDA3937_RS02780 at 614.306 kb on - strand, within DDA3937_RS02780 at 614.311 kb on + strand, within DDA3937_RS02780 at 614.312 kb on - strand, within DDA3937_RS02780 at 614.365 kb on + strand, within DDA3937_RS02780 at 614.365 kb on + strand, within DDA3937_RS02780 at 614.437 kb on + strand, within DDA3937_RS02780 at 614.438 kb on - strand, within DDA3937_RS02780 at 614.438 kb on - strand, within DDA3937_RS02780 at 614.507 kb on - strand, within DDA3937_RS02780 at 614.522 kb on + strand, within DDA3937_RS02780 at 614.522 kb on + strand, within DDA3937_RS02780 at 614.563 kb on + strand, within DDA3937_RS02780 at 614.564 kb on - strand, within DDA3937_RS02780 at 614.564 kb on - strand, within DDA3937_RS02780 at 614.615 kb on - strand, within DDA3937_RS02780 at 614.615 kb on - strand, within DDA3937_RS02780 at 614.615 kb on - strand, within DDA3937_RS02780 at 614.660 kb on + strand, within DDA3937_RS02780 at 614.660 kb on + strand, within DDA3937_RS02780 at 614.660 kb on + strand, within DDA3937_RS02780 at 614.661 kb on - strand, within DDA3937_RS02780 at 614.693 kb on + strand, within DDA3937_RS02780 at 614.764 kb on + strand, within DDA3937_RS02780 at 614.773 kb on + strand, within DDA3937_RS02780 at 614.791 kb on + strand, within DDA3937_RS02780 at 614.791 kb on + strand, within DDA3937_RS02780 at 614.791 kb on + strand, within DDA3937_RS02780 at 614.791 kb on + strand, within DDA3937_RS02780 at 614.792 kb on - strand, within DDA3937_RS02780 at 614.792 kb on - strand, within DDA3937_RS02780 at 614.910 kb on + strand, within DDA3937_RS02780 at 614.946 kb on + strand, within DDA3937_RS02780 at 614.946 kb on + strand, within DDA3937_RS02780 at 614.947 kb on - strand, within DDA3937_RS02780 at 614.947 kb on - strand, within DDA3937_RS02780 at 614.950 kb on + strand, within DDA3937_RS02780 at 614.950 kb on + strand, within DDA3937_RS02780 at 614.951 kb on - strand, within DDA3937_RS02780 at 614.951 kb on - strand, within DDA3937_RS02780 at 614.951 kb on - strand, within DDA3937_RS02780 at 614.951 kb on - strand, within DDA3937_RS02780
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 612,205 - -1.8 612,285 + -0.7 612,340 + -0.3 612,340 + -2.3 612,341 - +0.8 612,372 + +1.5 612,419 - DDA3937_RS02770 0.14 +1.4 612,419 - DDA3937_RS02770 0.14 -1.2 612,460 - DDA3937_RS02770 0.20 +1.5 612,465 - DDA3937_RS02770 0.21 +2.2 612,465 - DDA3937_RS02770 0.21 -0.4 612,465 - DDA3937_RS02770 0.21 -1.5 612,475 + DDA3937_RS02770 0.22 -0.7 612,475 + DDA3937_RS02770 0.22 -2.4 612,475 + DDA3937_RS02770 0.22 -1.9 612,475 + DDA3937_RS02770 0.22 +2.2 612,475 + DDA3937_RS02770 0.22 -0.7 612,475 + DDA3937_RS02770 0.22 -0.5 612,476 - DDA3937_RS02770 0.22 -1.8 612,476 - DDA3937_RS02770 0.22 +1.7 612,476 - DDA3937_RS02770 0.22 +1.3 612,476 - DDA3937_RS02770 0.22 +0.4 612,476 - DDA3937_RS02770 0.22 -0.6 612,476 - DDA3937_RS02770 0.22 +0.1 612,479 + DDA3937_RS02770 0.23 -0.8 612,507 + DDA3937_RS02770 0.27 -2.8 612,507 + DDA3937_RS02770 0.27 -0.9 612,507 + DDA3937_RS02770 0.27 +0.5 612,508 - DDA3937_RS02770 0.27 -2.4 612,508 - DDA3937_RS02770 0.27 +0.9 612,508 - DDA3937_RS02770 0.27 -0.0 612,508 - DDA3937_RS02770 0.27 +0.8 612,508 - DDA3937_RS02770 0.27 -2.6 612,508 - DDA3937_RS02770 0.27 +1.0 612,508 - DDA3937_RS02770 0.27 -1.6 612,508 - DDA3937_RS02770 0.27 -2.3 612,605 + DDA3937_RS02770 0.41 -0.9 612,711 + DDA3937_RS02770 0.56 -1.9 612,712 - DDA3937_RS02770 0.56 +0.6 612,712 - DDA3937_RS02770 0.56 -1.3 612,712 - DDA3937_RS02770 0.56 -1.7 612,712 - DDA3937_RS02770 0.56 -0.7 612,712 - DDA3937_RS02770 0.56 +0.9 612,723 - DDA3937_RS02770 0.57 -0.7 612,723 - DDA3937_RS02770 0.57 +0.6 612,848 + DDA3937_RS02770 0.75 +0.1 612,922 + DDA3937_RS02770 0.86 -1.8 612,923 - DDA3937_RS02770 0.86 +0.9 612,923 - DDA3937_RS02770 0.86 -1.5 612,923 - DDA3937_RS02770 0.86 -2.7 612,939 - DDA3937_RS02770 0.88 -1.3 612,959 + -1.8 612,959 + +2.5 612,960 - -3.2 612,960 - -0.6 612,981 - -3.4 613,014 + -1.5 613,015 - -2.0 613,015 - +0.7 613,026 + -0.9 613,026 + +1.3 613,044 - +0.7 613,050 - +0.0 613,060 + -1.1 613,060 + -1.0 613,060 + -2.0 613,060 + -0.3 613,060 + +0.7 613,061 - -0.9 613,061 - -0.3 613,061 - -2.3 613,061 - +2.7 613,061 - +1.5 613,061 - +0.0 613,061 - -2.9 613,061 - -2.6 613,061 - +0.2 613,061 - -1.9 613,103 + +1.0 613,158 + -0.8 613,158 + +1.3 613,159 - +1.4 613,159 - +1.5 613,159 - +0.1 613,159 - -0.4 613,250 + DDA3937_RS02775 0.13 +2.4 613,250 + DDA3937_RS02775 0.13 +1.7 613,250 + DDA3937_RS02775 0.13 -2.3 613,251 - DDA3937_RS02775 0.13 +0.9 613,251 - DDA3937_RS02775 0.13 +1.0 613,251 - DDA3937_RS02775 0.13 -0.3 613,251 - DDA3937_RS02775 0.13 -1.6 613,251 - DDA3937_RS02775 0.13 -1.2 613,252 + DDA3937_RS02775 0.13 -3.0 613,252 + DDA3937_RS02775 0.13 +0.4 613,252 + DDA3937_RS02775 0.13 +1.0 613,253 - DDA3937_RS02775 0.13 +0.6 613,253 - DDA3937_RS02775 0.13 -0.4 613,253 - DDA3937_RS02775 0.13 +2.3 613,253 - -0.7 613,253 - DDA3937_RS02775 0.13 -1.0 613,253 - DDA3937_RS02775 0.13 -2.3 613,387 + DDA3937_RS02775 0.28 -2.6 613,488 + DDA3937_RS02775 0.40 -0.2 613,489 - DDA3937_RS02775 0.40 -0.2 613,627 + DDA3937_RS02775 0.55 +1.9 613,635 - DDA3937_RS02775 0.56 +4.6 613,650 + DDA3937_RS02775 0.58 +1.0 613,651 - DDA3937_RS02775 0.58 -0.9 613,651 - DDA3937_RS02775 0.58 +0.1 613,651 - DDA3937_RS02775 0.58 -1.9 613,651 - DDA3937_RS02775 0.58 -1.3 613,651 - DDA3937_RS02775 0.58 +0.6 613,651 - DDA3937_RS02775 0.58 -2.6 613,651 - DDA3937_RS02775 0.58 +1.2 613,652 + DDA3937_RS02775 0.58 +0.7 613,652 + DDA3937_RS02775 0.58 +0.7 613,652 + DDA3937_RS02775 0.58 -1.4 613,652 + DDA3937_RS02775 0.58 +0.7 613,652 + DDA3937_RS02775 0.58 -1.0 613,653 - DDA3937_RS02775 0.58 -1.5 613,653 - DDA3937_RS02775 0.58 -0.2 613,653 - DDA3937_RS02775 0.58 -0.5 613,653 - DDA3937_RS02775 0.58 -2.2 613,653 - DDA3937_RS02775 0.58 +1.5 613,653 - DDA3937_RS02775 0.58 -0.7 613,653 - DDA3937_RS02775 0.58 -0.7 613,653 - DDA3937_RS02775 0.58 +0.7 613,779 + DDA3937_RS02775 0.72 -0.7 613,779 + DDA3937_RS02775 0.72 +1.4 613,779 + DDA3937_RS02775 0.72 -0.3 613,868 + DDA3937_RS02775 0.82 +1.2 613,868 + DDA3937_RS02775 0.82 +1.7 613,868 + DDA3937_RS02775 0.82 -2.0 613,914 + DDA3937_RS02775 0.87 -3.5 613,914 + DDA3937_RS02775 0.87 +1.8 613,915 - DDA3937_RS02775 0.87 +1.2 613,915 - DDA3937_RS02775 0.87 -0.7 613,915 - DDA3937_RS02775 0.87 -2.6 613,915 - DDA3937_RS02775 0.87 -1.9 613,928 - DDA3937_RS02775 0.89 -3.0 613,928 - DDA3937_RS02775 0.89 -1.9 614,013 + +2.1 614,013 + +0.3 614,014 - +1.4 614,014 - +0.2 614,014 - -2.8 614,036 + -2.7 614,037 - -1.3 614,086 + +0.5 614,086 + -0.9 614,086 + +1.6 614,086 + +0.5 614,086 + -0.9 614,086 + -0.4 614,086 + -0.7 614,086 + -1.3 614,086 + +3.0 614,087 - +1.1 614,087 - +1.0 614,088 + -0.8 614,088 + +0.7 614,088 + -0.6 614,089 - +0.2 614,106 - +0.9 614,132 + -1.0 614,138 - -0.5 614,197 - -0.4 614,222 + -3.0 614,222 + -1.0 614,222 + -0.9 614,222 + +1.3 614,222 + +1.8 614,222 + -2.0 614,223 - -0.6 614,223 - -0.9 614,223 - -0.4 614,236 + DDA3937_RS02780 0.10 +0.7 614,237 - DDA3937_RS02780 0.10 +1.3 614,274 + DDA3937_RS02780 0.14 -1.1 614,275 - DDA3937_RS02780 0.14 -1.7 614,275 - DDA3937_RS02780 0.14 -0.3 614,276 + DDA3937_RS02780 0.14 -1.1 614,276 + DDA3937_RS02780 0.14 -2.2 614,291 - DDA3937_RS02780 0.16 +2.4 614,305 + DDA3937_RS02780 0.17 +0.9 614,306 - DDA3937_RS02780 0.17 +1.4 614,306 - DDA3937_RS02780 0.17 -3.8 614,311 + DDA3937_RS02780 0.18 -1.9 614,312 - DDA3937_RS02780 0.18 -0.2 614,365 + DDA3937_RS02780 0.23 -1.1 614,365 + DDA3937_RS02780 0.23 -1.3 614,437 + DDA3937_RS02780 0.30 +0.2 614,438 - DDA3937_RS02780 0.31 +0.8 614,438 - DDA3937_RS02780 0.31 -3.3 614,507 - DDA3937_RS02780 0.38 -1.8 614,522 + DDA3937_RS02780 0.39 -2.0 614,522 + DDA3937_RS02780 0.39 -1.5 614,563 + DDA3937_RS02780 0.43 +0.8 614,564 - DDA3937_RS02780 0.43 -1.7 614,564 - DDA3937_RS02780 0.43 +1.7 614,615 - DDA3937_RS02780 0.49 -1.1 614,615 - DDA3937_RS02780 0.49 -0.7 614,615 - DDA3937_RS02780 0.49 -0.3 614,660 + DDA3937_RS02780 0.53 +0.8 614,660 + DDA3937_RS02780 0.53 -1.2 614,660 + DDA3937_RS02780 0.53 -0.3 614,661 - DDA3937_RS02780 0.53 -2.8 614,693 + DDA3937_RS02780 0.56 -1.2 614,764 + DDA3937_RS02780 0.64 -0.7 614,773 + DDA3937_RS02780 0.65 +0.6 614,791 + DDA3937_RS02780 0.66 -3.8 614,791 + DDA3937_RS02780 0.66 +0.8 614,791 + DDA3937_RS02780 0.66 +0.0 614,791 + DDA3937_RS02780 0.66 +1.3 614,792 - DDA3937_RS02780 0.66 -2.2 614,792 - DDA3937_RS02780 0.66 +2.0 614,910 + DDA3937_RS02780 0.78 -0.5 614,946 + DDA3937_RS02780 0.82 +0.1 614,946 + DDA3937_RS02780 0.82 -0.7 614,947 - DDA3937_RS02780 0.82 -1.9 614,947 - DDA3937_RS02780 0.82 -0.8 614,950 + DDA3937_RS02780 0.82 -1.2 614,950 + DDA3937_RS02780 0.82 -0.1 614,951 - DDA3937_RS02780 0.83 -1.9 614,951 - DDA3937_RS02780 0.83 +0.1 614,951 - DDA3937_RS02780 0.83 -0.7 614,951 - DDA3937_RS02780 0.83 -0.9
Or see this region's nucleotide sequence