Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02750 and DDA3937_RS02755 are separated by 128 nucleotides DDA3937_RS02755 and DDA3937_RS02760 are separated by 109 nucleotides
DDA3937_RS02750: DDA3937_RS02750 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 607,513 to 610,002
_RS02750
DDA3937_RS02755: DDA3937_RS02755 - diacylglycerol kinase, at 610,131 to 610,496
_RS02755
DDA3937_RS02760: DDA3937_RS02760 - repressor LexA, at 610,606 to 611,217
_RS02760
Position (kb) 610
611 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 610.115 kb on + strand at 610.115 kb on + strand at 610.115 kb on + strand at 610.115 kb on + strand at 610.116 kb on - strand at 610.126 kb on + strand at 610.127 kb on - strand at 610.127 kb on - strand at 610.256 kb on + strand, within DDA3937_RS02755 at 610.256 kb on + strand, within DDA3937_RS02755 at 610.257 kb on - strand, within DDA3937_RS02755 at 610.259 kb on + strand, within DDA3937_RS02755 at 610.259 kb on + strand, within DDA3937_RS02755 at 610.352 kb on + strand, within DDA3937_RS02755 at 610.386 kb on + strand, within DDA3937_RS02755 at 610.387 kb on - strand, within DDA3937_RS02755 at 610.433 kb on - strand, within DDA3937_RS02755 at 610.462 kb on + strand at 610.463 kb on - strand at 610.529 kb on + strand at 610.564 kb on + strand at 610.564 kb on + strand at 610.565 kb on - strand at 610.565 kb on - strand at 610.565 kb on - strand at 610.566 kb on + strand at 610.566 kb on + strand at 610.566 kb on + strand at 610.567 kb on - strand at 610.568 kb on + strand at 610.568 kb on + strand at 610.568 kb on + strand at 610.568 kb on + strand at 610.568 kb on + strand at 610.568 kb on + strand at 611.199 kb on + strand at 611.215 kb on + strand at 611.230 kb on - strand at 611.307 kb on - strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.337 kb on + strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.338 kb on - strand at 611.346 kb on + strand at 611.346 kb on + strand at 611.347 kb on - strand at 611.347 kb on - strand at 611.347 kb on - strand at 611.369 kb on + strand at 611.369 kb on + strand at 611.369 kb on + strand at 611.370 kb on - strand at 611.370 kb on - strand at 611.370 kb on - strand at 611.387 kb on + strand at 611.400 kb on + strand at 611.400 kb on + strand at 611.401 kb on - strand at 611.408 kb on + strand at 611.422 kb on + strand at 611.422 kb on + strand at 611.423 kb on - strand at 611.436 kb on - strand at 611.436 kb on - strand at 611.439 kb on + strand at 611.439 kb on + strand at 611.440 kb on - strand at 611.440 kb on - strand at 611.440 kb on - strand at 611.466 kb on + strand at 611.467 kb on - strand at 611.469 kb on + strand at 611.469 kb on + strand at 611.474 kb on - strand at 611.486 kb on + strand at 611.486 kb on + strand at 611.487 kb on - strand at 611.490 kb on + strand at 611.490 kb on + strand at 611.490 kb on + strand at 611.491 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 610,115 + +1.5 610,115 + +0.3 610,115 + -0.7 610,115 + +1.4 610,116 - -0.9 610,126 + +1.9 610,127 - -1.4 610,127 - +0.3 610,256 + DDA3937_RS02755 0.34 -2.0 610,256 + DDA3937_RS02755 0.34 -0.6 610,257 - DDA3937_RS02755 0.34 -1.3 610,259 + DDA3937_RS02755 0.35 -1.9 610,259 + DDA3937_RS02755 0.35 -1.3 610,352 + DDA3937_RS02755 0.60 +0.6 610,386 + DDA3937_RS02755 0.70 -0.8 610,387 - DDA3937_RS02755 0.70 -2.3 610,433 - DDA3937_RS02755 0.83 +0.1 610,462 + +0.3 610,463 - -1.9 610,529 + +1.6 610,564 + +0.2 610,564 + +0.1 610,565 - -1.0 610,565 - -0.9 610,565 - -0.3 610,566 + -1.3 610,566 + -1.2 610,566 + +0.7 610,567 - -0.9 610,568 + -0.5 610,568 + -2.8 610,568 + -0.2 610,568 + +1.0 610,568 + -0.7 610,568 + -1.9 611,199 + +1.5 611,215 + -1.3 611,230 - +1.7 611,307 - -1.3 611,330 + +0.9 611,330 + -1.5 611,330 + +1.8 611,330 + -1.0 611,330 + -0.2 611,330 + +0.8 611,330 + -0.3 611,331 - +0.4 611,331 - -1.3 611,331 - -0.2 611,331 - +1.0 611,331 - -0.8 611,337 + +0.3 611,337 + +2.1 611,337 + -2.2 611,337 + -2.8 611,337 + +0.1 611,337 + -2.4 611,337 + +2.4 611,337 + -1.3 611,337 + +1.9 611,337 + -1.3 611,338 - -3.0 611,338 - +0.1 611,338 - +0.5 611,338 - +1.9 611,338 - -2.3 611,338 - -1.4 611,338 - -0.2 611,338 - +0.6 611,338 - +0.1 611,338 - -2.3 611,338 - -1.0 611,346 + -0.7 611,346 + -1.4 611,347 - -2.4 611,347 - -1.6 611,347 - -2.2 611,369 + -0.7 611,369 + -1.8 611,369 + -0.9 611,370 - -2.5 611,370 - -1.2 611,370 - +0.1 611,387 + -3.5 611,400 + +1.4 611,400 + -1.0 611,401 - +2.3 611,408 + +0.4 611,422 + +1.8 611,422 + -3.8 611,423 - -1.8 611,436 - +0.4 611,436 - -2.2 611,439 + -2.2 611,439 + -0.3 611,440 - -1.7 611,440 - -1.8 611,440 - +2.5 611,466 + -2.3 611,467 - -2.2 611,469 + -2.7 611,469 + -3.2 611,474 - +1.2 611,486 + +0.8 611,486 + +0.8 611,487 - -0.4 611,490 + -1.7 611,490 + +0.9 611,490 + +1.2 611,491 - -1.2
Or see this region's nucleotide sequence