Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02615 and DDA3937_RS02620 are separated by 26 nucleotides DDA3937_RS02620 and DDA3937_RS02625 are separated by 205 nucleotides DDA3937_RS02625 and DDA3937_RS21820 are separated by 57 nucleotides
DDA3937_RS02615: DDA3937_RS02615 - DUF4832 domain-containing protein, at 579,529 to 580,923
_RS02615
DDA3937_RS02620: DDA3937_RS02620 - serine acetyltransferase, at 580,950 to 581,450
_RS02620
DDA3937_RS02625: DDA3937_RS02625 - DUF1778 domain-containing protein, at 581,656 to 581,949
_RS02625
DDA3937_RS21820: DDA3937_RS21820 - GNAT family N-acetyltransferase, at 582,007 to 582,430
_RS21820
Position (kb) 580
581
582 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 579.966 kb on + strand, within DDA3937_RS02615 at 579.973 kb on + strand, within DDA3937_RS02615 at 579.973 kb on + strand, within DDA3937_RS02615 at 579.973 kb on + strand, within DDA3937_RS02615 at 579.974 kb on - strand, within DDA3937_RS02615 at 579.975 kb on + strand, within DDA3937_RS02615 at 579.975 kb on + strand, within DDA3937_RS02615 at 579.975 kb on + strand, within DDA3937_RS02615 at 579.975 kb on + strand, within DDA3937_RS02615 at 579.976 kb on - strand, within DDA3937_RS02615 at 579.976 kb on - strand, within DDA3937_RS02615 at 580.009 kb on + strand, within DDA3937_RS02615 at 580.010 kb on - strand, within DDA3937_RS02615 at 580.017 kb on + strand, within DDA3937_RS02615 at 580.017 kb on + strand, within DDA3937_RS02615 at 580.017 kb on + strand, within DDA3937_RS02615 at 580.018 kb on - strand, within DDA3937_RS02615 at 580.018 kb on - strand, within DDA3937_RS02615 at 580.033 kb on + strand, within DDA3937_RS02615 at 580.034 kb on - strand, within DDA3937_RS02615 at 580.034 kb on - strand, within DDA3937_RS02615 at 580.034 kb on - strand, within DDA3937_RS02615 at 580.034 kb on - strand, within DDA3937_RS02615 at 580.034 kb on - strand, within DDA3937_RS02615 at 580.034 kb on - strand, within DDA3937_RS02615 at 580.034 kb on - strand at 580.034 kb on - strand, within DDA3937_RS02615 at 580.036 kb on - strand, within DDA3937_RS02615 at 580.038 kb on - strand, within DDA3937_RS02615 at 580.095 kb on + strand, within DDA3937_RS02615 at 580.096 kb on - strand, within DDA3937_RS02615 at 580.096 kb on - strand, within DDA3937_RS02615 at 580.114 kb on + strand, within DDA3937_RS02615 at 580.114 kb on + strand, within DDA3937_RS02615 at 580.115 kb on - strand, within DDA3937_RS02615 at 580.115 kb on - strand, within DDA3937_RS02615 at 580.138 kb on + strand, within DDA3937_RS02615 at 580.150 kb on + strand, within DDA3937_RS02615 at 580.266 kb on + strand, within DDA3937_RS02615 at 580.347 kb on + strand, within DDA3937_RS02615 at 580.393 kb on + strand, within DDA3937_RS02615 at 580.393 kb on + strand, within DDA3937_RS02615 at 580.393 kb on + strand, within DDA3937_RS02615 at 580.393 kb on + strand, within DDA3937_RS02615 at 580.393 kb on + strand, within DDA3937_RS02615 at 580.393 kb on + strand, within DDA3937_RS02615 at 580.394 kb on - strand, within DDA3937_RS02615 at 580.394 kb on - strand, within DDA3937_RS02615 at 580.394 kb on - strand, within DDA3937_RS02615 at 580.394 kb on - strand, within DDA3937_RS02615 at 580.394 kb on - strand, within DDA3937_RS02615 at 580.394 kb on - strand, within DDA3937_RS02615 at 580.395 kb on + strand, within DDA3937_RS02615 at 580.396 kb on - strand, within DDA3937_RS02615 at 580.396 kb on - strand, within DDA3937_RS02615 at 580.396 kb on - strand, within DDA3937_RS02615 at 580.396 kb on - strand, within DDA3937_RS02615 at 580.396 kb on - strand, within DDA3937_RS02615 at 580.396 kb on - strand, within DDA3937_RS02615 at 580.396 kb on - strand, within DDA3937_RS02615 at 580.396 kb on - strand, within DDA3937_RS02615 at 580.396 kb on - strand, within DDA3937_RS02615 at 580.396 kb on - strand, within DDA3937_RS02615 at 580.423 kb on + strand, within DDA3937_RS02615 at 580.424 kb on - strand, within DDA3937_RS02615 at 580.425 kb on + strand, within DDA3937_RS02615 at 580.426 kb on - strand, within DDA3937_RS02615 at 580.426 kb on - strand, within DDA3937_RS02615 at 580.578 kb on - strand, within DDA3937_RS02615 at 580.578 kb on - strand, within DDA3937_RS02615 at 580.578 kb on - strand, within DDA3937_RS02615 at 580.578 kb on - strand, within DDA3937_RS02615 at 580.635 kb on + strand, within DDA3937_RS02615 at 580.657 kb on + strand, within DDA3937_RS02615 at 580.666 kb on + strand, within DDA3937_RS02615 at 580.666 kb on + strand, within DDA3937_RS02615 at 580.666 kb on + strand, within DDA3937_RS02615 at 580.666 kb on + strand, within DDA3937_RS02615 at 580.667 kb on - strand, within DDA3937_RS02615 at 580.667 kb on - strand, within DDA3937_RS02615 at 580.667 kb on - strand, within DDA3937_RS02615 at 580.714 kb on - strand, within DDA3937_RS02615 at 580.761 kb on + strand, within DDA3937_RS02615 at 580.761 kb on + strand, within DDA3937_RS02615 at 580.762 kb on - strand, within DDA3937_RS02615 at 580.771 kb on + strand, within DDA3937_RS02615 at 580.811 kb on - strand at 580.812 kb on + strand at 580.812 kb on + strand at 580.813 kb on - strand at 580.813 kb on - strand at 580.815 kb on + strand at 580.933 kb on + strand at 580.939 kb on + strand at 580.940 kb on - strand at 580.940 kb on - strand at 580.943 kb on + strand at 580.943 kb on + strand at 580.943 kb on + strand at 580.944 kb on - strand at 580.949 kb on + strand at 580.949 kb on + strand at 580.950 kb on - strand at 580.950 kb on - strand at 580.972 kb on + strand at 580.984 kb on + strand at 581.003 kb on + strand, within DDA3937_RS02620 at 581.003 kb on + strand, within DDA3937_RS02620 at 581.009 kb on + strand, within DDA3937_RS02620 at 581.021 kb on - strand, within DDA3937_RS02620 at 581.021 kb on - strand, within DDA3937_RS02620 at 581.046 kb on + strand, within DDA3937_RS02620 at 581.103 kb on - strand, within DDA3937_RS02620 at 581.103 kb on - strand, within DDA3937_RS02620 at 581.175 kb on + strand, within DDA3937_RS02620 at 581.189 kb on + strand, within DDA3937_RS02620 at 581.189 kb on + strand, within DDA3937_RS02620 at 581.190 kb on - strand, within DDA3937_RS02620 at 581.190 kb on - strand, within DDA3937_RS02620 at 581.190 kb on - strand, within DDA3937_RS02620 at 581.190 kb on - strand, within DDA3937_RS02620 at 581.190 kb on - strand, within DDA3937_RS02620 at 581.190 kb on - strand, within DDA3937_RS02620 at 581.209 kb on + strand, within DDA3937_RS02620 at 581.209 kb on + strand, within DDA3937_RS02620 at 581.209 kb on + strand, within DDA3937_RS02620 at 581.209 kb on + strand, within DDA3937_RS02620 at 581.210 kb on - strand, within DDA3937_RS02620 at 581.210 kb on - strand, within DDA3937_RS02620 at 581.264 kb on - strand, within DDA3937_RS02620 at 581.348 kb on + strand, within DDA3937_RS02620 at 581.348 kb on + strand at 581.348 kb on + strand, within DDA3937_RS02620 at 581.348 kb on + strand, within DDA3937_RS02620 at 581.348 kb on + strand, within DDA3937_RS02620 at 581.348 kb on + strand, within DDA3937_RS02620 at 581.348 kb on + strand, within DDA3937_RS02620 at 581.348 kb on + strand, within DDA3937_RS02620 at 581.349 kb on - strand, within DDA3937_RS02620 at 581.349 kb on - strand, within DDA3937_RS02620 at 581.349 kb on - strand, within DDA3937_RS02620 at 581.354 kb on - strand, within DDA3937_RS02620 at 581.365 kb on + strand, within DDA3937_RS02620 at 581.365 kb on + strand, within DDA3937_RS02620 at 581.416 kb on + strand at 581.416 kb on + strand at 581.417 kb on - strand at 581.417 kb on - strand at 581.427 kb on + strand at 581.456 kb on + strand at 581.456 kb on + strand at 581.456 kb on + strand at 581.462 kb on + strand at 581.462 kb on + strand at 581.463 kb on - strand at 581.463 kb on - strand at 581.463 kb on - strand at 581.470 kb on + strand at 581.471 kb on - strand at 581.471 kb on - strand at 581.479 kb on - strand at 581.479 kb on - strand at 581.510 kb on + strand at 581.511 kb on - strand at 581.513 kb on + strand at 581.513 kb on + strand at 581.513 kb on + strand at 581.595 kb on - strand at 581.599 kb on + strand at 581.599 kb on + strand at 581.599 kb on + strand at 581.600 kb on - strand at 581.618 kb on - strand at 581.619 kb on + strand at 581.619 kb on + strand at 581.619 kb on + strand at 581.620 kb on - strand at 581.620 kb on - strand at 581.623 kb on + strand at 581.652 kb on + strand at 581.652 kb on + strand at 581.652 kb on + strand at 581.652 kb on + strand at 581.653 kb on - strand at 581.653 kb on - strand at 581.653 kb on - strand at 581.653 kb on - strand at 581.655 kb on + strand at 581.655 kb on + strand at 581.656 kb on - strand at 581.656 kb on - strand at 581.656 kb on - strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.985 kb on - strand at 581.985 kb on - strand at 581.985 kb on - strand at 581.987 kb on + strand at 581.987 kb on + strand at 581.987 kb on + strand at 581.987 kb on + strand at 581.988 kb on - strand at 581.988 kb on - strand at 581.988 kb on - strand at 581.988 kb on - strand at 581.988 kb on - strand at 582.015 kb on + strand at 582.016 kb on - strand at 582.109 kb on + strand, within DDA3937_RS21820 at 582.109 kb on + strand, within DDA3937_RS21820 at 582.109 kb on + strand, within DDA3937_RS21820 at 582.110 kb on - strand, within DDA3937_RS21820 at 582.112 kb on + strand, within DDA3937_RS21820 at 582.112 kb on + strand, within DDA3937_RS21820 at 582.112 kb on + strand at 582.134 kb on + strand, within DDA3937_RS21820 at 582.135 kb on - strand, within DDA3937_RS21820 at 582.172 kb on - strand, within DDA3937_RS21820 at 582.172 kb on - strand, within DDA3937_RS21820 at 582.172 kb on - strand, within DDA3937_RS21820 at 582.172 kb on - strand, within DDA3937_RS21820 at 582.272 kb on + strand, within DDA3937_RS21820 at 582.272 kb on + strand, within DDA3937_RS21820 at 582.272 kb on + strand, within DDA3937_RS21820 at 582.273 kb on - strand, within DDA3937_RS21820 at 582.293 kb on - strand, within DDA3937_RS21820 at 582.341 kb on + strand, within DDA3937_RS21820 at 582.341 kb on + strand, within DDA3937_RS21820 at 582.420 kb on + strand at 582.440 kb on + strand at 582.440 kb on + strand at 582.440 kb on + strand at 582.440 kb on + strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 579,966 + DDA3937_RS02615 0.31 +0.1 579,973 + DDA3937_RS02615 0.32 -0.2 579,973 + DDA3937_RS02615 0.32 +1.0 579,973 + DDA3937_RS02615 0.32 +1.4 579,974 - DDA3937_RS02615 0.32 -0.3 579,975 + DDA3937_RS02615 0.32 -2.1 579,975 + DDA3937_RS02615 0.32 +2.0 579,975 + DDA3937_RS02615 0.32 -1.0 579,975 + DDA3937_RS02615 0.32 +1.4 579,976 - DDA3937_RS02615 0.32 +1.2 579,976 - DDA3937_RS02615 0.32 +1.2 580,009 + DDA3937_RS02615 0.34 -1.3 580,010 - DDA3937_RS02615 0.34 -1.2 580,017 + DDA3937_RS02615 0.35 -1.7 580,017 + DDA3937_RS02615 0.35 -1.2 580,017 + DDA3937_RS02615 0.35 +0.2 580,018 - DDA3937_RS02615 0.35 -0.8 580,018 - DDA3937_RS02615 0.35 -2.2 580,033 + DDA3937_RS02615 0.36 +1.7 580,034 - DDA3937_RS02615 0.36 -1.9 580,034 - DDA3937_RS02615 0.36 +1.7 580,034 - DDA3937_RS02615 0.36 +0.1 580,034 - DDA3937_RS02615 0.36 -1.8 580,034 - DDA3937_RS02615 0.36 -0.7 580,034 - DDA3937_RS02615 0.36 +0.7 580,034 - +3.7 580,034 - DDA3937_RS02615 0.36 +2.9 580,036 - DDA3937_RS02615 0.36 +0.6 580,038 - DDA3937_RS02615 0.36 -0.3 580,095 + DDA3937_RS02615 0.41 -1.5 580,096 - DDA3937_RS02615 0.41 -1.3 580,096 - DDA3937_RS02615 0.41 -2.9 580,114 + DDA3937_RS02615 0.42 -3.1 580,114 + DDA3937_RS02615 0.42 -2.7 580,115 - DDA3937_RS02615 0.42 +0.1 580,115 - DDA3937_RS02615 0.42 -0.5 580,138 + DDA3937_RS02615 0.44 -2.5 580,150 + DDA3937_RS02615 0.45 +0.4 580,266 + DDA3937_RS02615 0.53 -0.7 580,347 + DDA3937_RS02615 0.59 -3.3 580,393 + DDA3937_RS02615 0.62 +1.9 580,393 + DDA3937_RS02615 0.62 +0.7 580,393 + DDA3937_RS02615 0.62 -1.8 580,393 + DDA3937_RS02615 0.62 +0.5 580,393 + DDA3937_RS02615 0.62 -3.0 580,393 + DDA3937_RS02615 0.62 -1.8 580,394 - DDA3937_RS02615 0.62 -0.9 580,394 - DDA3937_RS02615 0.62 +0.9 580,394 - DDA3937_RS02615 0.62 -1.5 580,394 - DDA3937_RS02615 0.62 -2.0 580,394 - DDA3937_RS02615 0.62 -2.3 580,394 - DDA3937_RS02615 0.62 -0.2 580,395 + DDA3937_RS02615 0.62 +0.3 580,396 - DDA3937_RS02615 0.62 -2.7 580,396 - DDA3937_RS02615 0.62 -0.2 580,396 - DDA3937_RS02615 0.62 +2.4 580,396 - DDA3937_RS02615 0.62 -0.3 580,396 - DDA3937_RS02615 0.62 -0.3 580,396 - DDA3937_RS02615 0.62 -0.3 580,396 - DDA3937_RS02615 0.62 +0.3 580,396 - DDA3937_RS02615 0.62 +1.2 580,396 - DDA3937_RS02615 0.62 -0.8 580,396 - DDA3937_RS02615 0.62 -0.9 580,423 + DDA3937_RS02615 0.64 +0.9 580,424 - DDA3937_RS02615 0.64 -0.6 580,425 + DDA3937_RS02615 0.64 -0.9 580,426 - DDA3937_RS02615 0.64 -1.0 580,426 - DDA3937_RS02615 0.64 +0.5 580,578 - DDA3937_RS02615 0.75 -0.9 580,578 - DDA3937_RS02615 0.75 +1.7 580,578 - DDA3937_RS02615 0.75 -1.8 580,578 - DDA3937_RS02615 0.75 +0.9 580,635 + DDA3937_RS02615 0.79 -2.4 580,657 + DDA3937_RS02615 0.81 -1.6 580,666 + DDA3937_RS02615 0.82 +0.2 580,666 + DDA3937_RS02615 0.82 -0.2 580,666 + DDA3937_RS02615 0.82 +1.9 580,666 + DDA3937_RS02615 0.82 -2.9 580,667 - DDA3937_RS02615 0.82 +1.4 580,667 - DDA3937_RS02615 0.82 +0.9 580,667 - DDA3937_RS02615 0.82 -0.8 580,714 - DDA3937_RS02615 0.85 +0.7 580,761 + DDA3937_RS02615 0.88 -3.3 580,761 + DDA3937_RS02615 0.88 +1.1 580,762 - DDA3937_RS02615 0.88 +2.9 580,771 + DDA3937_RS02615 0.89 +1.1 580,811 - +0.3 580,812 + -0.2 580,812 + +1.5 580,813 - +0.1 580,813 - -1.8 580,815 + -2.4 580,933 + -0.3 580,939 + -2.0 580,940 - -0.9 580,940 - +1.9 580,943 + -0.5 580,943 + -0.3 580,943 + -0.1 580,944 - -1.2 580,949 + +0.3 580,949 + -4.8 580,950 - -1.9 580,950 - -0.7 580,972 + -1.5 580,984 + +0.1 581,003 + DDA3937_RS02620 0.11 -3.0 581,003 + DDA3937_RS02620 0.11 -0.4 581,009 + DDA3937_RS02620 0.12 +0.1 581,021 - DDA3937_RS02620 0.14 -0.4 581,021 - DDA3937_RS02620 0.14 -0.7 581,046 + DDA3937_RS02620 0.19 -0.9 581,103 - DDA3937_RS02620 0.31 -1.8 581,103 - DDA3937_RS02620 0.31 -0.1 581,175 + DDA3937_RS02620 0.45 +0.7 581,189 + DDA3937_RS02620 0.48 -1.7 581,189 + DDA3937_RS02620 0.48 -2.5 581,190 - DDA3937_RS02620 0.48 +0.6 581,190 - DDA3937_RS02620 0.48 -1.7 581,190 - DDA3937_RS02620 0.48 -2.9 581,190 - DDA3937_RS02620 0.48 -1.2 581,190 - DDA3937_RS02620 0.48 -0.3 581,190 - DDA3937_RS02620 0.48 +0.7 581,209 + DDA3937_RS02620 0.52 -0.7 581,209 + DDA3937_RS02620 0.52 -1.2 581,209 + DDA3937_RS02620 0.52 -0.8 581,209 + DDA3937_RS02620 0.52 -0.2 581,210 - DDA3937_RS02620 0.52 +0.7 581,210 - DDA3937_RS02620 0.52 +0.4 581,264 - DDA3937_RS02620 0.63 -2.7 581,348 + DDA3937_RS02620 0.79 -1.3 581,348 + +0.7 581,348 + DDA3937_RS02620 0.79 +1.5 581,348 + DDA3937_RS02620 0.79 -1.2 581,348 + DDA3937_RS02620 0.79 -1.9 581,348 + DDA3937_RS02620 0.79 -2.4 581,348 + DDA3937_RS02620 0.79 +1.9 581,348 + DDA3937_RS02620 0.79 -0.2 581,349 - DDA3937_RS02620 0.80 +1.7 581,349 - DDA3937_RS02620 0.80 -1.0 581,349 - DDA3937_RS02620 0.80 -2.7 581,354 - DDA3937_RS02620 0.81 -2.7 581,365 + DDA3937_RS02620 0.83 -2.0 581,365 + DDA3937_RS02620 0.83 +0.3 581,416 + +0.2 581,416 + +2.5 581,417 - -1.2 581,417 - -3.5 581,427 + -0.3 581,456 + +1.8 581,456 + -1.2 581,456 + -1.2 581,462 + -1.5 581,462 + -0.1 581,463 - -0.9 581,463 - +1.1 581,463 - +0.1 581,470 + +0.8 581,471 - -1.4 581,471 - -1.5 581,479 - -0.9 581,479 - -1.5 581,510 + +0.7 581,511 - -2.3 581,513 + +1.2 581,513 + -1.0 581,513 + -0.2 581,595 - -1.3 581,599 + +1.4 581,599 + +2.2 581,599 + -0.7 581,600 - -2.4 581,618 - -1.7 581,619 + -0.9 581,619 + -0.7 581,619 + +1.0 581,620 - -0.3 581,620 - -1.2 581,623 + +0.8 581,652 + -0.1 581,652 + -0.7 581,652 + -1.2 581,652 + -0.2 581,653 - +0.1 581,653 - -2.6 581,653 - -0.9 581,653 - -0.6 581,655 + -1.4 581,655 + -0.7 581,656 - -0.2 581,656 - -1.7 581,656 - -1.8 581,984 + +4.8 581,984 + -2.6 581,984 + -2.5 581,984 + -1.3 581,984 + -1.4 581,984 + -1.9 581,984 + -1.7 581,985 - +1.3 581,985 - +2.8 581,985 - +1.2 581,987 + +0.2 581,987 + -0.5 581,987 + +0.2 581,987 + -2.0 581,988 - +2.3 581,988 - -0.8 581,988 - -0.4 581,988 - -0.9 581,988 - +0.3 582,015 + -2.2 582,016 - -1.0 582,109 + DDA3937_RS21820 0.24 -2.5 582,109 + DDA3937_RS21820 0.24 -0.7 582,109 + DDA3937_RS21820 0.24 +1.4 582,110 - DDA3937_RS21820 0.24 -1.2 582,112 + DDA3937_RS21820 0.25 +1.1 582,112 + DDA3937_RS21820 0.25 -1.1 582,112 + +0.1 582,134 + DDA3937_RS21820 0.30 -1.7 582,135 - DDA3937_RS21820 0.30 -2.1 582,172 - DDA3937_RS21820 0.39 +1.6 582,172 - DDA3937_RS21820 0.39 -4.1 582,172 - DDA3937_RS21820 0.39 +0.8 582,172 - DDA3937_RS21820 0.39 -2.0 582,272 + DDA3937_RS21820 0.62 +1.0 582,272 + DDA3937_RS21820 0.62 -0.2 582,272 + DDA3937_RS21820 0.62 +1.1 582,273 - DDA3937_RS21820 0.63 +0.1 582,293 - DDA3937_RS21820 0.67 +0.1 582,341 + DDA3937_RS21820 0.79 -0.3 582,341 + DDA3937_RS21820 0.79 -1.3 582,420 + -0.1 582,440 + +1.3 582,440 + -1.9 582,440 + +1.0 582,440 + -0.9 582,441 - -3.0 582,441 - +2.7 582,441 - -0.9 582,441 - +0.5 582,441 - -1.2 582,441 - +0.5
Or see this region's nucleotide sequence