Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02600 and DDA3937_RS02605 are separated by 1 nucleotides DDA3937_RS02605 and DDA3937_RS02610 are separated by 15 nucleotides DDA3937_RS02610 and DDA3937_RS02615 are separated by 38 nucleotides
DDA3937_RS02600: DDA3937_RS02600 - glycosyltransferase family 4 protein, at 576,739 to 577,950
_RS02600
DDA3937_RS02605: DDA3937_RS02605 - glycosyltransferase family 4 protein, at 577,952 to 579,067
_RS02605
DDA3937_RS02610: DDA3937_RS02610 - hypothetical protein, at 579,083 to 579,490
_RS02610
DDA3937_RS02615: DDA3937_RS02615 - DUF4832 domain-containing protein, at 579,529 to 580,923
_RS02615
Position (kb) 577
578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 576.969 kb on + strand, within DDA3937_RS02600 at 576.970 kb on - strand, within DDA3937_RS02600 at 576.984 kb on + strand, within DDA3937_RS02600 at 576.984 kb on + strand, within DDA3937_RS02600 at 577.041 kb on + strand, within DDA3937_RS02600 at 577.045 kb on + strand, within DDA3937_RS02600 at 577.120 kb on + strand, within DDA3937_RS02600 at 577.121 kb on - strand, within DDA3937_RS02600 at 577.121 kb on - strand, within DDA3937_RS02600 at 577.121 kb on - strand, within DDA3937_RS02600 at 577.129 kb on - strand, within DDA3937_RS02600 at 577.129 kb on - strand, within DDA3937_RS02600 at 577.129 kb on - strand, within DDA3937_RS02600 at 577.129 kb on - strand, within DDA3937_RS02600 at 577.142 kb on - strand, within DDA3937_RS02600 at 577.197 kb on + strand, within DDA3937_RS02600 at 577.197 kb on + strand, within DDA3937_RS02600 at 577.207 kb on - strand, within DDA3937_RS02600 at 577.211 kb on - strand, within DDA3937_RS02600 at 577.341 kb on - strand, within DDA3937_RS02600 at 577.474 kb on - strand, within DDA3937_RS02600 at 577.474 kb on - strand, within DDA3937_RS02600 at 577.543 kb on + strand, within DDA3937_RS02600 at 577.543 kb on + strand, within DDA3937_RS02600 at 577.588 kb on + strand, within DDA3937_RS02600 at 577.591 kb on - strand, within DDA3937_RS02600 at 577.591 kb on - strand, within DDA3937_RS02600 at 577.657 kb on + strand, within DDA3937_RS02600 at 577.657 kb on + strand, within DDA3937_RS02600 at 577.658 kb on - strand, within DDA3937_RS02600 at 577.661 kb on - strand, within DDA3937_RS02600 at 577.726 kb on - strand, within DDA3937_RS02600 at 577.734 kb on + strand, within DDA3937_RS02600 at 577.736 kb on + strand, within DDA3937_RS02600 at 577.737 kb on - strand, within DDA3937_RS02600 at 577.760 kb on + strand, within DDA3937_RS02600 at 577.761 kb on - strand, within DDA3937_RS02600 at 577.893 kb on - strand at 577.952 kb on - strand at 578.033 kb on + strand at 578.090 kb on + strand, within DDA3937_RS02605 at 578.091 kb on - strand, within DDA3937_RS02605 at 578.095 kb on + strand, within DDA3937_RS02605 at 578.096 kb on - strand at 578.096 kb on - strand, within DDA3937_RS02605 at 578.163 kb on + strand, within DDA3937_RS02605 at 578.172 kb on + strand, within DDA3937_RS02605 at 578.173 kb on - strand, within DDA3937_RS02605 at 578.240 kb on - strand, within DDA3937_RS02605 at 578.315 kb on + strand, within DDA3937_RS02605 at 578.316 kb on - strand, within DDA3937_RS02605 at 578.316 kb on - strand, within DDA3937_RS02605 at 578.355 kb on + strand at 578.355 kb on + strand, within DDA3937_RS02605 at 578.399 kb on + strand, within DDA3937_RS02605 at 578.417 kb on - strand, within DDA3937_RS02605 at 578.426 kb on - strand, within DDA3937_RS02605 at 578.441 kb on + strand, within DDA3937_RS02605 at 578.442 kb on - strand, within DDA3937_RS02605 at 578.464 kb on + strand, within DDA3937_RS02605 at 578.465 kb on - strand, within DDA3937_RS02605 at 578.468 kb on + strand, within DDA3937_RS02605 at 578.468 kb on + strand, within DDA3937_RS02605 at 578.469 kb on - strand, within DDA3937_RS02605 at 578.469 kb on - strand, within DDA3937_RS02605 at 578.469 kb on - strand, within DDA3937_RS02605 at 578.497 kb on - strand, within DDA3937_RS02605 at 578.509 kb on + strand, within DDA3937_RS02605 at 578.552 kb on + strand, within DDA3937_RS02605 at 578.552 kb on + strand, within DDA3937_RS02605 at 578.603 kb on - strand, within DDA3937_RS02605 at 578.675 kb on + strand, within DDA3937_RS02605 at 578.676 kb on - strand, within DDA3937_RS02605 at 578.676 kb on - strand, within DDA3937_RS02605 at 578.677 kb on + strand, within DDA3937_RS02605 at 578.677 kb on + strand, within DDA3937_RS02605 at 578.677 kb on + strand, within DDA3937_RS02605 at 578.678 kb on - strand, within DDA3937_RS02605 at 578.678 kb on - strand, within DDA3937_RS02605 at 578.678 kb on - strand, within DDA3937_RS02605 at 578.678 kb on - strand, within DDA3937_RS02605 at 578.678 kb on - strand, within DDA3937_RS02605 at 578.721 kb on + strand, within DDA3937_RS02605 at 578.721 kb on + strand, within DDA3937_RS02605 at 578.721 kb on + strand, within DDA3937_RS02605 at 578.773 kb on + strand, within DDA3937_RS02605 at 578.795 kb on + strand, within DDA3937_RS02605 at 578.914 kb on - strand, within DDA3937_RS02605 at 578.988 kb on + strand at 578.988 kb on + strand at 578.997 kb on - strand at 578.998 kb on + strand at 578.998 kb on + strand at 578.998 kb on + strand at 579.036 kb on - strand at 579.125 kb on + strand, within DDA3937_RS02610 at 579.161 kb on - strand, within DDA3937_RS02610 at 579.238 kb on + strand at 579.238 kb on + strand, within DDA3937_RS02610 at 579.239 kb on - strand, within DDA3937_RS02610 at 579.269 kb on + strand, within DDA3937_RS02610 at 579.270 kb on - strand, within DDA3937_RS02610 at 579.270 kb on - strand, within DDA3937_RS02610 at 579.327 kb on + strand, within DDA3937_RS02610 at 579.391 kb on - strand, within DDA3937_RS02610 at 579.401 kb on + strand, within DDA3937_RS02610 at 579.401 kb on + strand, within DDA3937_RS02610 at 579.401 kb on + strand, within DDA3937_RS02610 at 579.401 kb on + strand, within DDA3937_RS02610 at 579.401 kb on + strand, within DDA3937_RS02610 at 579.401 kb on + strand, within DDA3937_RS02610 at 579.401 kb on + strand, within DDA3937_RS02610 at 579.402 kb on - strand at 579.402 kb on - strand, within DDA3937_RS02610 at 579.402 kb on - strand, within DDA3937_RS02610 at 579.402 kb on - strand, within DDA3937_RS02610 at 579.402 kb on - strand, within DDA3937_RS02610 at 579.402 kb on - strand, within DDA3937_RS02610 at 579.402 kb on - strand, within DDA3937_RS02610 at 579.402 kb on - strand, within DDA3937_RS02610 at 579.402 kb on - strand, within DDA3937_RS02610 at 579.402 kb on - strand, within DDA3937_RS02610 at 579.402 kb on - strand, within DDA3937_RS02610 at 579.409 kb on + strand, within DDA3937_RS02610 at 579.409 kb on + strand, within DDA3937_RS02610 at 579.409 kb on + strand, within DDA3937_RS02610 at 579.409 kb on + strand, within DDA3937_RS02610 at 579.409 kb on + strand, within DDA3937_RS02610 at 579.410 kb on - strand, within DDA3937_RS02610 at 579.410 kb on - strand, within DDA3937_RS02610 at 579.410 kb on - strand, within DDA3937_RS02610 at 579.424 kb on + strand, within DDA3937_RS02610 at 579.450 kb on + strand at 579.516 kb on + strand at 579.516 kb on + strand at 579.516 kb on + strand at 579.516 kb on + strand at 579.517 kb on - strand at 579.526 kb on + strand at 579.526 kb on + strand at 579.526 kb on + strand at 579.526 kb on + strand at 579.526 kb on + strand at 579.526 kb on + strand at 579.526 kb on + strand at 579.526 kb on + strand at 579.526 kb on + strand at 579.527 kb on - strand at 579.527 kb on - strand at 579.527 kb on - strand at 579.527 kb on - strand at 579.551 kb on + strand at 579.551 kb on + strand at 579.564 kb on - strand at 579.564 kb on - strand at 579.595 kb on - strand at 579.672 kb on + strand at 579.675 kb on + strand, within DDA3937_RS02615 at 579.675 kb on + strand, within DDA3937_RS02615 at 579.721 kb on + strand, within DDA3937_RS02615 at 579.721 kb on + strand, within DDA3937_RS02615 at 579.721 kb on + strand, within DDA3937_RS02615 at 579.721 kb on + strand, within DDA3937_RS02615 at 579.722 kb on - strand, within DDA3937_RS02615 at 579.722 kb on - strand, within DDA3937_RS02615 at 579.722 kb on - strand, within DDA3937_RS02615 at 579.734 kb on - strand, within DDA3937_RS02615 at 579.766 kb on + strand, within DDA3937_RS02615 at 579.767 kb on - strand, within DDA3937_RS02615 at 579.767 kb on - strand, within DDA3937_RS02615 at 579.789 kb on + strand, within DDA3937_RS02615 at 579.789 kb on + strand, within DDA3937_RS02615 at 579.790 kb on - strand, within DDA3937_RS02615 at 579.837 kb on - strand, within DDA3937_RS02615 at 579.843 kb on + strand, within DDA3937_RS02615 at 579.903 kb on + strand, within DDA3937_RS02615 at 579.904 kb on - strand, within DDA3937_RS02615 at 579.904 kb on - strand, within DDA3937_RS02615 at 579.966 kb on + strand, within DDA3937_RS02615 at 579.973 kb on + strand, within DDA3937_RS02615 at 579.973 kb on + strand, within DDA3937_RS02615 at 579.973 kb on + strand, within DDA3937_RS02615 at 579.974 kb on - strand, within DDA3937_RS02615 at 579.975 kb on + strand, within DDA3937_RS02615 at 579.975 kb on + strand, within DDA3937_RS02615 at 579.975 kb on + strand, within DDA3937_RS02615 at 579.975 kb on + strand, within DDA3937_RS02615 at 579.976 kb on - strand, within DDA3937_RS02615 at 579.976 kb on - strand, within DDA3937_RS02615 at 580.009 kb on + strand, within DDA3937_RS02615 at 580.010 kb on - strand, within DDA3937_RS02615 at 580.017 kb on + strand, within DDA3937_RS02615 at 580.017 kb on + strand, within DDA3937_RS02615 at 580.017 kb on + strand, within DDA3937_RS02615 at 580.018 kb on - strand, within DDA3937_RS02615 at 580.018 kb on - strand, within DDA3937_RS02615 at 580.033 kb on + strand, within DDA3937_RS02615 at 580.034 kb on - strand, within DDA3937_RS02615 at 580.034 kb on - strand, within DDA3937_RS02615 at 580.034 kb on - strand, within DDA3937_RS02615 at 580.034 kb on - strand, within DDA3937_RS02615 at 580.034 kb on - strand, within DDA3937_RS02615 at 580.034 kb on - strand, within DDA3937_RS02615 at 580.034 kb on - strand at 580.034 kb on - strand, within DDA3937_RS02615 at 580.036 kb on - strand, within DDA3937_RS02615 at 580.038 kb on - strand, within DDA3937_RS02615
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 576,969 + DDA3937_RS02600 0.19 +0.1 576,970 - DDA3937_RS02600 0.19 -0.7 576,984 + DDA3937_RS02600 0.20 -1.6 576,984 + DDA3937_RS02600 0.20 -1.5 577,041 + DDA3937_RS02600 0.25 +0.7 577,045 + DDA3937_RS02600 0.25 +0.3 577,120 + DDA3937_RS02600 0.31 +1.9 577,121 - DDA3937_RS02600 0.32 -2.5 577,121 - DDA3937_RS02600 0.32 -1.7 577,121 - DDA3937_RS02600 0.32 -0.5 577,129 - DDA3937_RS02600 0.32 -2.3 577,129 - DDA3937_RS02600 0.32 -2.0 577,129 - DDA3937_RS02600 0.32 +0.9 577,129 - DDA3937_RS02600 0.32 -0.3 577,142 - DDA3937_RS02600 0.33 -2.3 577,197 + DDA3937_RS02600 0.38 -1.9 577,197 + DDA3937_RS02600 0.38 +3.4 577,207 - DDA3937_RS02600 0.39 -0.4 577,211 - DDA3937_RS02600 0.39 -2.0 577,341 - DDA3937_RS02600 0.50 +0.5 577,474 - DDA3937_RS02600 0.61 -3.6 577,474 - DDA3937_RS02600 0.61 +1.1 577,543 + DDA3937_RS02600 0.66 -1.3 577,543 + DDA3937_RS02600 0.66 -0.2 577,588 + DDA3937_RS02600 0.70 -3.2 577,591 - DDA3937_RS02600 0.70 +2.6 577,591 - DDA3937_RS02600 0.70 -1.3 577,657 + DDA3937_RS02600 0.76 -1.3 577,657 + DDA3937_RS02600 0.76 -2.3 577,658 - DDA3937_RS02600 0.76 +0.0 577,661 - DDA3937_RS02600 0.76 +0.1 577,726 - DDA3937_RS02600 0.81 -3.4 577,734 + DDA3937_RS02600 0.82 +0.1 577,736 + DDA3937_RS02600 0.82 +0.7 577,737 - DDA3937_RS02600 0.82 -0.9 577,760 + DDA3937_RS02600 0.84 -2.3 577,761 - DDA3937_RS02600 0.84 -1.9 577,893 - +2.0 577,952 - +0.7 578,033 + -2.5 578,090 + DDA3937_RS02605 0.12 +1.1 578,091 - DDA3937_RS02605 0.12 -1.8 578,095 + DDA3937_RS02605 0.13 +0.5 578,096 - +0.7 578,096 - DDA3937_RS02605 0.13 +1.0 578,163 + DDA3937_RS02605 0.19 -0.8 578,172 + DDA3937_RS02605 0.20 -0.4 578,173 - DDA3937_RS02605 0.20 -1.3 578,240 - DDA3937_RS02605 0.26 -1.3 578,315 + DDA3937_RS02605 0.33 -1.2 578,316 - DDA3937_RS02605 0.33 +3.1 578,316 - DDA3937_RS02605 0.33 -1.5 578,355 + -0.7 578,355 + DDA3937_RS02605 0.36 -2.8 578,399 + DDA3937_RS02605 0.40 -0.4 578,417 - DDA3937_RS02605 0.42 -1.5 578,426 - DDA3937_RS02605 0.42 -0.3 578,441 + DDA3937_RS02605 0.44 +1.6 578,442 - DDA3937_RS02605 0.44 -0.1 578,464 + DDA3937_RS02605 0.46 +0.4 578,465 - DDA3937_RS02605 0.46 -0.7 578,468 + DDA3937_RS02605 0.46 -1.5 578,468 + DDA3937_RS02605 0.46 -0.3 578,469 - DDA3937_RS02605 0.46 +0.3 578,469 - DDA3937_RS02605 0.46 -0.7 578,469 - DDA3937_RS02605 0.46 -1.2 578,497 - DDA3937_RS02605 0.49 +0.8 578,509 + DDA3937_RS02605 0.50 +1.0 578,552 + DDA3937_RS02605 0.54 +0.7 578,552 + DDA3937_RS02605 0.54 +0.5 578,603 - DDA3937_RS02605 0.58 -0.3 578,675 + DDA3937_RS02605 0.65 -3.1 578,676 - DDA3937_RS02605 0.65 +1.3 578,676 - DDA3937_RS02605 0.65 -1.2 578,677 + DDA3937_RS02605 0.65 -3.6 578,677 + DDA3937_RS02605 0.65 +2.0 578,677 + DDA3937_RS02605 0.65 -1.5 578,678 - DDA3937_RS02605 0.65 +0.5 578,678 - DDA3937_RS02605 0.65 -0.1 578,678 - DDA3937_RS02605 0.65 -1.9 578,678 - DDA3937_RS02605 0.65 -1.1 578,678 - DDA3937_RS02605 0.65 -0.9 578,721 + DDA3937_RS02605 0.69 -0.7 578,721 + DDA3937_RS02605 0.69 -2.2 578,721 + DDA3937_RS02605 0.69 +0.9 578,773 + DDA3937_RS02605 0.74 +0.1 578,795 + DDA3937_RS02605 0.76 +0.7 578,914 - DDA3937_RS02605 0.86 -2.8 578,988 + +1.1 578,988 + +1.4 578,997 - -3.0 578,998 + -1.7 578,998 + +0.9 578,998 + -1.0 579,036 - -1.7 579,125 + DDA3937_RS02610 0.10 -1.4 579,161 - DDA3937_RS02610 0.19 +0.3 579,238 + +2.2 579,238 + DDA3937_RS02610 0.38 -1.6 579,239 - DDA3937_RS02610 0.38 -2.2 579,269 + DDA3937_RS02610 0.46 +0.6 579,270 - DDA3937_RS02610 0.46 -0.9 579,270 - DDA3937_RS02610 0.46 -1.9 579,327 + DDA3937_RS02610 0.60 +2.4 579,391 - DDA3937_RS02610 0.75 -1.2 579,401 + DDA3937_RS02610 0.78 -0.8 579,401 + DDA3937_RS02610 0.78 -0.5 579,401 + DDA3937_RS02610 0.78 -1.7 579,401 + DDA3937_RS02610 0.78 +1.7 579,401 + DDA3937_RS02610 0.78 -0.7 579,401 + DDA3937_RS02610 0.78 -1.5 579,401 + DDA3937_RS02610 0.78 -1.1 579,402 - +0.7 579,402 - DDA3937_RS02610 0.78 -0.8 579,402 - DDA3937_RS02610 0.78 -0.7 579,402 - DDA3937_RS02610 0.78 -1.7 579,402 - DDA3937_RS02610 0.78 +0.4 579,402 - DDA3937_RS02610 0.78 +0.7 579,402 - DDA3937_RS02610 0.78 -3.4 579,402 - DDA3937_RS02610 0.78 -3.1 579,402 - DDA3937_RS02610 0.78 +1.2 579,402 - DDA3937_RS02610 0.78 -0.9 579,402 - DDA3937_RS02610 0.78 -2.0 579,409 + DDA3937_RS02610 0.80 -0.7 579,409 + DDA3937_RS02610 0.80 +1.5 579,409 + DDA3937_RS02610 0.80 -1.9 579,409 + DDA3937_RS02610 0.80 +1.1 579,409 + DDA3937_RS02610 0.80 +2.5 579,410 - DDA3937_RS02610 0.80 -2.3 579,410 - DDA3937_RS02610 0.80 +1.2 579,410 - DDA3937_RS02610 0.80 -1.0 579,424 + DDA3937_RS02610 0.84 +1.7 579,450 + -1.8 579,516 + -2.4 579,516 + +1.6 579,516 + +0.7 579,516 + -0.2 579,517 - -0.1 579,526 + -1.9 579,526 + +1.3 579,526 + +0.7 579,526 + -2.0 579,526 + +0.3 579,526 + -1.8 579,526 + +1.8 579,526 + -1.2 579,526 + -2.2 579,527 - -0.3 579,527 - +1.7 579,527 - -1.7 579,527 - +0.8 579,551 + -0.7 579,551 + -0.9 579,564 - +0.7 579,564 - +1.2 579,595 - -2.7 579,672 + -0.7 579,675 + DDA3937_RS02615 0.10 -0.4 579,675 + DDA3937_RS02615 0.10 +0.7 579,721 + DDA3937_RS02615 0.14 -1.7 579,721 + DDA3937_RS02615 0.14 -0.8 579,721 + DDA3937_RS02615 0.14 -0.0 579,721 + DDA3937_RS02615 0.14 +0.3 579,722 - DDA3937_RS02615 0.14 -0.9 579,722 - DDA3937_RS02615 0.14 +0.1 579,722 - DDA3937_RS02615 0.14 +0.6 579,734 - DDA3937_RS02615 0.15 +0.1 579,766 + DDA3937_RS02615 0.17 -0.3 579,767 - DDA3937_RS02615 0.17 -1.9 579,767 - DDA3937_RS02615 0.17 -1.9 579,789 + DDA3937_RS02615 0.19 +0.4 579,789 + DDA3937_RS02615 0.19 +0.2 579,790 - DDA3937_RS02615 0.19 -1.2 579,837 - DDA3937_RS02615 0.22 -2.4 579,843 + DDA3937_RS02615 0.23 +1.9 579,903 + DDA3937_RS02615 0.27 +0.8 579,904 - DDA3937_RS02615 0.27 +0.1 579,904 - DDA3937_RS02615 0.27 -2.0 579,966 + DDA3937_RS02615 0.31 +0.1 579,973 + DDA3937_RS02615 0.32 -0.2 579,973 + DDA3937_RS02615 0.32 +1.0 579,973 + DDA3937_RS02615 0.32 +1.4 579,974 - DDA3937_RS02615 0.32 -0.3 579,975 + DDA3937_RS02615 0.32 -2.1 579,975 + DDA3937_RS02615 0.32 +2.0 579,975 + DDA3937_RS02615 0.32 -1.0 579,975 + DDA3937_RS02615 0.32 +1.4 579,976 - DDA3937_RS02615 0.32 +1.2 579,976 - DDA3937_RS02615 0.32 +1.2 580,009 + DDA3937_RS02615 0.34 -1.3 580,010 - DDA3937_RS02615 0.34 -1.2 580,017 + DDA3937_RS02615 0.35 -1.7 580,017 + DDA3937_RS02615 0.35 -1.2 580,017 + DDA3937_RS02615 0.35 +0.2 580,018 - DDA3937_RS02615 0.35 -0.8 580,018 - DDA3937_RS02615 0.35 -2.2 580,033 + DDA3937_RS02615 0.36 +1.7 580,034 - DDA3937_RS02615 0.36 -1.9 580,034 - DDA3937_RS02615 0.36 +1.7 580,034 - DDA3937_RS02615 0.36 +0.1 580,034 - DDA3937_RS02615 0.36 -1.8 580,034 - DDA3937_RS02615 0.36 -0.7 580,034 - DDA3937_RS02615 0.36 +0.7 580,034 - +3.7 580,034 - DDA3937_RS02615 0.36 +2.9 580,036 - DDA3937_RS02615 0.36 +0.6 580,038 - DDA3937_RS02615 0.36 -0.3
Or see this region's nucleotide sequence