Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02585 and DDA3937_RS02590 overlap by 4 nucleotides DDA3937_RS02590 and DDA3937_RS02595 overlap by 8 nucleotides DDA3937_RS02595 and DDA3937_RS02600 are separated by 9 nucleotides
DDA3937_RS02585: DDA3937_RS02585 - oligosaccharide flippase family protein, at 573,157 to 574,368
_RS02585
DDA3937_RS02590: DDA3937_RS02590 - hypothetical protein, at 574,365 to 575,747
_RS02590
DDA3937_RS02595: DDA3937_RS02595 - glycosyltransferase, at 575,740 to 576,729
_RS02595
DDA3937_RS02600: DDA3937_RS02600 - glycosyltransferase family 4 protein, at 576,739 to 577,950
_RS02600
Position (kb) 574
575
576 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 573.466 kb on + strand, within DDA3937_RS02585 at 573.467 kb on - strand, within DDA3937_RS02585 at 573.467 kb on - strand, within DDA3937_RS02585 at 573.484 kb on + strand, within DDA3937_RS02585 at 573.484 kb on + strand, within DDA3937_RS02585 at 573.528 kb on + strand, within DDA3937_RS02585 at 573.528 kb on + strand, within DDA3937_RS02585 at 573.529 kb on - strand, within DDA3937_RS02585 at 573.660 kb on + strand, within DDA3937_RS02585 at 573.660 kb on + strand, within DDA3937_RS02585 at 573.661 kb on - strand, within DDA3937_RS02585 at 573.789 kb on + strand, within DDA3937_RS02585 at 573.789 kb on + strand, within DDA3937_RS02585 at 573.789 kb on + strand, within DDA3937_RS02585 at 573.792 kb on + strand, within DDA3937_RS02585 at 573.793 kb on - strand, within DDA3937_RS02585 at 573.795 kb on + strand, within DDA3937_RS02585 at 573.808 kb on - strand, within DDA3937_RS02585 at 573.816 kb on + strand, within DDA3937_RS02585 at 573.909 kb on + strand, within DDA3937_RS02585 at 573.989 kb on + strand, within DDA3937_RS02585 at 574.026 kb on - strand, within DDA3937_RS02585 at 574.100 kb on - strand, within DDA3937_RS02585 at 574.116 kb on - strand, within DDA3937_RS02585 at 574.217 kb on + strand, within DDA3937_RS02585 at 574.326 kb on + strand at 574.350 kb on + strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.398 kb on + strand at 574.398 kb on + strand at 574.417 kb on + strand at 574.476 kb on - strand at 574.526 kb on + strand, within DDA3937_RS02590 at 574.527 kb on - strand, within DDA3937_RS02590 at 574.527 kb on - strand, within DDA3937_RS02590 at 574.597 kb on + strand, within DDA3937_RS02590 at 574.601 kb on + strand, within DDA3937_RS02590 at 574.602 kb on - strand, within DDA3937_RS02590 at 574.602 kb on - strand, within DDA3937_RS02590 at 574.610 kb on - strand, within DDA3937_RS02590 at 574.621 kb on + strand, within DDA3937_RS02590 at 574.629 kb on - strand, within DDA3937_RS02590 at 574.631 kb on + strand, within DDA3937_RS02590 at 574.734 kb on + strand, within DDA3937_RS02590 at 574.735 kb on - strand, within DDA3937_RS02590 at 574.746 kb on + strand, within DDA3937_RS02590 at 574.770 kb on + strand, within DDA3937_RS02590 at 574.770 kb on + strand, within DDA3937_RS02590 at 574.771 kb on - strand, within DDA3937_RS02590 at 574.878 kb on - strand, within DDA3937_RS02590 at 574.910 kb on + strand, within DDA3937_RS02590 at 574.911 kb on - strand, within DDA3937_RS02590 at 574.935 kb on - strand, within DDA3937_RS02590 at 575.070 kb on + strand, within DDA3937_RS02590 at 575.073 kb on - strand, within DDA3937_RS02590 at 575.074 kb on + strand, within DDA3937_RS02590 at 575.075 kb on - strand, within DDA3937_RS02590 at 575.092 kb on + strand, within DDA3937_RS02590 at 575.256 kb on + strand, within DDA3937_RS02590 at 575.259 kb on - strand at 575.288 kb on + strand, within DDA3937_RS02590 at 575.296 kb on + strand, within DDA3937_RS02590 at 575.360 kb on - strand, within DDA3937_RS02590 at 575.412 kb on + strand, within DDA3937_RS02590 at 575.412 kb on + strand, within DDA3937_RS02590 at 575.412 kb on + strand, within DDA3937_RS02590 at 575.413 kb on - strand, within DDA3937_RS02590 at 575.440 kb on + strand, within DDA3937_RS02590 at 575.452 kb on + strand, within DDA3937_RS02590 at 575.499 kb on - strand at 575.502 kb on + strand, within DDA3937_RS02590 at 575.502 kb on + strand, within DDA3937_RS02590 at 575.551 kb on + strand at 575.676 kb on + strand at 575.676 kb on + strand at 575.677 kb on - strand at 575.677 kb on - strand at 575.725 kb on - strand at 575.740 kb on - strand at 575.748 kb on + strand at 575.772 kb on + strand at 575.773 kb on - strand at 575.817 kb on + strand at 575.818 kb on - strand at 575.818 kb on - strand at 575.829 kb on + strand at 575.870 kb on + strand, within DDA3937_RS02595 at 575.871 kb on - strand, within DDA3937_RS02595 at 575.871 kb on - strand, within DDA3937_RS02595 at 575.871 kb on - strand, within DDA3937_RS02595 at 575.974 kb on + strand, within DDA3937_RS02595 at 575.975 kb on - strand, within DDA3937_RS02595 at 575.981 kb on - strand, within DDA3937_RS02595 at 575.995 kb on + strand, within DDA3937_RS02595 at 575.996 kb on - strand, within DDA3937_RS02595 at 575.996 kb on - strand, within DDA3937_RS02595 at 576.040 kb on - strand, within DDA3937_RS02595 at 576.124 kb on + strand, within DDA3937_RS02595 at 576.125 kb on - strand, within DDA3937_RS02595 at 576.132 kb on + strand, within DDA3937_RS02595 at 576.132 kb on + strand, within DDA3937_RS02595 at 576.132 kb on + strand, within DDA3937_RS02595 at 576.163 kb on + strand, within DDA3937_RS02595 at 576.204 kb on - strand, within DDA3937_RS02595 at 576.204 kb on - strand, within DDA3937_RS02595 at 576.205 kb on + strand, within DDA3937_RS02595 at 576.231 kb on - strand, within DDA3937_RS02595 at 576.236 kb on - strand, within DDA3937_RS02595 at 576.306 kb on + strand, within DDA3937_RS02595 at 576.307 kb on - strand, within DDA3937_RS02595 at 576.332 kb on - strand, within DDA3937_RS02595 at 576.350 kb on - strand, within DDA3937_RS02595 at 576.365 kb on - strand, within DDA3937_RS02595 at 576.365 kb on - strand, within DDA3937_RS02595 at 576.367 kb on - strand, within DDA3937_RS02595 at 576.445 kb on + strand, within DDA3937_RS02595 at 576.445 kb on + strand, within DDA3937_RS02595 at 576.522 kb on - strand, within DDA3937_RS02595 at 576.584 kb on + strand, within DDA3937_RS02595 at 576.708 kb on + strand at 576.717 kb on + strand at 576.718 kb on - strand at 576.718 kb on - strand at 576.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 573,466 + DDA3937_RS02585 0.25 -2.2 573,467 - DDA3937_RS02585 0.26 -1.8 573,467 - DDA3937_RS02585 0.26 -1.5 573,484 + DDA3937_RS02585 0.27 -0.2 573,484 + DDA3937_RS02585 0.27 +1.7 573,528 + DDA3937_RS02585 0.31 -0.7 573,528 + DDA3937_RS02585 0.31 -2.4 573,529 - DDA3937_RS02585 0.31 +1.7 573,660 + DDA3937_RS02585 0.42 +0.8 573,660 + DDA3937_RS02585 0.42 -2.5 573,661 - DDA3937_RS02585 0.42 -2.4 573,789 + DDA3937_RS02585 0.52 -1.3 573,789 + DDA3937_RS02585 0.52 -2.4 573,789 + DDA3937_RS02585 0.52 -1.7 573,792 + DDA3937_RS02585 0.52 -1.2 573,793 - DDA3937_RS02585 0.52 -0.1 573,795 + DDA3937_RS02585 0.53 -1.9 573,808 - DDA3937_RS02585 0.54 -1.0 573,816 + DDA3937_RS02585 0.54 +0.9 573,909 + DDA3937_RS02585 0.62 -1.5 573,989 + DDA3937_RS02585 0.69 +0.7 574,026 - DDA3937_RS02585 0.72 +1.0 574,100 - DDA3937_RS02585 0.78 -2.8 574,116 - DDA3937_RS02585 0.79 +0.8 574,217 + DDA3937_RS02585 0.87 -0.9 574,326 + +1.5 574,350 + -1.5 574,386 + +1.5 574,386 + +2.2 574,398 + -2.2 574,398 + -0.3 574,417 + -0.9 574,476 - +2.2 574,526 + DDA3937_RS02590 0.12 +0.7 574,527 - DDA3937_RS02590 0.12 -2.6 574,527 - DDA3937_RS02590 0.12 +0.1 574,597 + DDA3937_RS02590 0.17 -1.2 574,601 + DDA3937_RS02590 0.17 -0.6 574,602 - DDA3937_RS02590 0.17 -2.2 574,602 - DDA3937_RS02590 0.17 +1.5 574,610 - DDA3937_RS02590 0.18 +0.2 574,621 + DDA3937_RS02590 0.19 +0.7 574,629 - DDA3937_RS02590 0.19 +2.9 574,631 + DDA3937_RS02590 0.19 -0.9 574,734 + DDA3937_RS02590 0.27 -1.8 574,735 - DDA3937_RS02590 0.27 -0.2 574,746 + DDA3937_RS02590 0.28 -3.3 574,770 + DDA3937_RS02590 0.29 +2.6 574,770 + DDA3937_RS02590 0.29 +0.9 574,771 - DDA3937_RS02590 0.29 +1.3 574,878 - DDA3937_RS02590 0.37 +1.0 574,910 + DDA3937_RS02590 0.39 +1.5 574,911 - DDA3937_RS02590 0.39 -1.5 574,935 - DDA3937_RS02590 0.41 +1.4 575,070 + DDA3937_RS02590 0.51 -1.8 575,073 - DDA3937_RS02590 0.51 -2.5 575,074 + DDA3937_RS02590 0.51 -0.4 575,075 - DDA3937_RS02590 0.51 +0.2 575,092 + DDA3937_RS02590 0.53 -1.7 575,256 + DDA3937_RS02590 0.64 +1.7 575,259 - +2.2 575,288 + DDA3937_RS02590 0.67 -1.6 575,296 + DDA3937_RS02590 0.67 -0.3 575,360 - DDA3937_RS02590 0.72 -1.1 575,412 + DDA3937_RS02590 0.76 +0.5 575,412 + DDA3937_RS02590 0.76 +0.4 575,412 + DDA3937_RS02590 0.76 +0.4 575,413 - DDA3937_RS02590 0.76 +0.4 575,440 + DDA3937_RS02590 0.78 -2.0 575,452 + DDA3937_RS02590 0.79 +1.4 575,499 - -0.3 575,502 + DDA3937_RS02590 0.82 -0.9 575,502 + DDA3937_RS02590 0.82 +1.2 575,551 + +0.1 575,676 + -0.7 575,676 + -0.7 575,677 - +0.1 575,677 - +0.2 575,725 - -0.3 575,740 - -2.2 575,748 + +0.5 575,772 + +1.1 575,773 - -2.2 575,817 + -0.7 575,818 - -1.7 575,818 - -2.3 575,829 + +1.2 575,870 + DDA3937_RS02595 0.13 -1.8 575,871 - DDA3937_RS02595 0.13 -0.3 575,871 - DDA3937_RS02595 0.13 -1.9 575,871 - DDA3937_RS02595 0.13 -0.3 575,974 + DDA3937_RS02595 0.24 +0.8 575,975 - DDA3937_RS02595 0.24 -2.0 575,981 - DDA3937_RS02595 0.24 -2.2 575,995 + DDA3937_RS02595 0.26 +0.7 575,996 - DDA3937_RS02595 0.26 -1.7 575,996 - DDA3937_RS02595 0.26 -1.3 576,040 - DDA3937_RS02595 0.30 +1.1 576,124 + DDA3937_RS02595 0.39 +1.3 576,125 - DDA3937_RS02595 0.39 +0.2 576,132 + DDA3937_RS02595 0.40 -0.9 576,132 + DDA3937_RS02595 0.40 -2.7 576,132 + DDA3937_RS02595 0.40 -2.3 576,163 + DDA3937_RS02595 0.43 -3.5 576,204 - DDA3937_RS02595 0.47 +1.5 576,204 - DDA3937_RS02595 0.47 +0.7 576,205 + DDA3937_RS02595 0.47 +1.6 576,231 - DDA3937_RS02595 0.50 +0.3 576,236 - DDA3937_RS02595 0.50 -1.1 576,306 + DDA3937_RS02595 0.57 -0.0 576,307 - DDA3937_RS02595 0.57 -0.9 576,332 - DDA3937_RS02595 0.60 -2.9 576,350 - DDA3937_RS02595 0.62 -1.2 576,365 - DDA3937_RS02595 0.63 -4.0 576,365 - DDA3937_RS02595 0.63 -3.3 576,367 - DDA3937_RS02595 0.63 -0.8 576,445 + DDA3937_RS02595 0.71 +1.9 576,445 + DDA3937_RS02595 0.71 -1.2 576,522 - DDA3937_RS02595 0.79 +0.6 576,584 + DDA3937_RS02595 0.85 -2.5 576,708 + -0.6 576,717 + -2.0 576,718 - -4.2 576,718 - -0.8 576,747 - -2.7
Or see this region's nucleotide sequence