Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02500 and DDA3937_RS02505 are separated by 47 nucleotides DDA3937_RS02505 and DDA3937_RS02510 overlap by 4 nucleotides DDA3937_RS02510 and DDA3937_RS02515 are separated by 104 nucleotides DDA3937_RS02515 and DDA3937_RS02520 are separated by 79 nucleotides
DDA3937_RS02500: DDA3937_RS02500 - ABC transporter ATP-binding protein, at 553,639 to 554,454
_RS02500
DDA3937_RS02505: DDA3937_RS02505 - ABC transporter substrate-binding protein, at 554,502 to 555,443
_RS02505
DDA3937_RS02510: DDA3937_RS02510 - iron ABC transporter permease, at 555,440 to 556,438
_RS02510
DDA3937_RS02515: DDA3937_RS02515 - alkyl hydroperoxide reductase subunit C, at 556,543 to 557,106
_RS02515
DDA3937_RS02520: DDA3937_RS02520 - alkyl hydroperoxide reductase subunit F, at 557,186 to 558,748
_RS02520
Position (kb) 555
556
557 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 554.450 kb on + strand at 554.479 kb on + strand at 554.479 kb on + strand at 554.700 kb on + strand, within DDA3937_RS02505 at 554.761 kb on - strand, within DDA3937_RS02505 at 554.820 kb on + strand, within DDA3937_RS02505 at 554.820 kb on + strand, within DDA3937_RS02505 at 554.821 kb on - strand, within DDA3937_RS02505 at 554.821 kb on - strand, within DDA3937_RS02505 at 554.821 kb on - strand, within DDA3937_RS02505 at 554.884 kb on + strand, within DDA3937_RS02505 at 554.949 kb on + strand, within DDA3937_RS02505 at 555.045 kb on - strand, within DDA3937_RS02505 at 555.045 kb on - strand, within DDA3937_RS02505 at 555.076 kb on + strand, within DDA3937_RS02505 at 555.076 kb on + strand, within DDA3937_RS02505 at 555.076 kb on + strand, within DDA3937_RS02505 at 555.085 kb on - strand, within DDA3937_RS02505 at 555.101 kb on + strand, within DDA3937_RS02505 at 555.123 kb on + strand, within DDA3937_RS02505 at 555.124 kb on - strand, within DDA3937_RS02505 at 555.124 kb on - strand, within DDA3937_RS02505 at 555.346 kb on - strand, within DDA3937_RS02505 at 555.360 kb on + strand at 555.458 kb on + strand at 555.480 kb on + strand at 555.480 kb on + strand at 555.480 kb on + strand at 555.480 kb on + strand at 555.480 kb on + strand at 555.480 kb on + strand at 555.481 kb on - strand at 555.481 kb on - strand at 555.481 kb on - strand at 555.481 kb on - strand at 555.481 kb on - strand at 555.483 kb on + strand at 555.484 kb on - strand at 555.484 kb on - strand at 555.913 kb on + strand, within DDA3937_RS02510 at 555.914 kb on - strand, within DDA3937_RS02510 at 555.944 kb on + strand, within DDA3937_RS02510 at 556.044 kb on + strand, within DDA3937_RS02510 at 556.436 kb on + strand at 556.437 kb on - strand at 556.441 kb on - strand at 556.441 kb on - strand at 556.480 kb on + strand at 556.480 kb on + strand at 556.480 kb on + strand at 556.480 kb on + strand at 556.480 kb on + strand at 556.481 kb on - strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.557 kb on + strand at 556.561 kb on - strand at 556.671 kb on + strand, within DDA3937_RS02515 at 556.712 kb on - strand, within DDA3937_RS02515 at 556.715 kb on - strand, within DDA3937_RS02515 at 556.739 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.774 kb on - strand, within DDA3937_RS02515 at 556.774 kb on - strand, within DDA3937_RS02515 at 556.929 kb on + strand, within DDA3937_RS02515 at 556.929 kb on + strand, within DDA3937_RS02515 at 556.930 kb on - strand, within DDA3937_RS02515 at 557.011 kb on + strand, within DDA3937_RS02515 at 557.011 kb on + strand, within DDA3937_RS02515 at 557.011 kb on + strand, within DDA3937_RS02515 at 557.012 kb on - strand, within DDA3937_RS02515 at 557.012 kb on - strand, within DDA3937_RS02515 at 557.012 kb on - strand, within DDA3937_RS02515 at 557.046 kb on + strand, within DDA3937_RS02515 at 557.046 kb on + strand, within DDA3937_RS02515 at 557.067 kb on + strand at 557.067 kb on + strand at 557.067 kb on + strand at 557.068 kb on - strand at 557.068 kb on - strand at 557.105 kb on - strand at 557.132 kb on - strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.197 kb on + strand at 557.198 kb on - strand at 557.198 kb on - strand at 557.198 kb on - strand at 557.198 kb on - strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.223 kb on - strand at 557.236 kb on - strand at 557.253 kb on + strand at 557.253 kb on + strand at 557.350 kb on + strand, within DDA3937_RS02520 at 557.351 kb on - strand, within DDA3937_RS02520 at 557.369 kb on - strand, within DDA3937_RS02520 at 557.369 kb on - strand, within DDA3937_RS02520
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 554,450 + +0.7 554,479 + -1.7 554,479 + +0.1 554,700 + DDA3937_RS02505 0.21 +0.4 554,761 - DDA3937_RS02505 0.27 -0.7 554,820 + DDA3937_RS02505 0.34 +0.7 554,820 + DDA3937_RS02505 0.34 +1.3 554,821 - DDA3937_RS02505 0.34 +0.9 554,821 - DDA3937_RS02505 0.34 -0.9 554,821 - DDA3937_RS02505 0.34 -0.3 554,884 + DDA3937_RS02505 0.41 -0.5 554,949 + DDA3937_RS02505 0.47 -2.3 555,045 - DDA3937_RS02505 0.58 -1.2 555,045 - DDA3937_RS02505 0.58 +0.0 555,076 + DDA3937_RS02505 0.61 +0.8 555,076 + DDA3937_RS02505 0.61 -1.2 555,076 + DDA3937_RS02505 0.61 -0.5 555,085 - DDA3937_RS02505 0.62 +2.1 555,101 + DDA3937_RS02505 0.64 -1.4 555,123 + DDA3937_RS02505 0.66 +2.1 555,124 - DDA3937_RS02505 0.66 -1.9 555,124 - DDA3937_RS02505 0.66 -2.4 555,346 - DDA3937_RS02505 0.90 -3.1 555,360 + +0.9 555,458 + -2.6 555,480 + +0.8 555,480 + -0.3 555,480 + +1.1 555,480 + -2.9 555,480 + -1.2 555,480 + -1.5 555,481 - -1.6 555,481 - +0.4 555,481 - -1.3 555,481 - -0.4 555,481 - -0.6 555,483 + +0.1 555,484 - +0.1 555,484 - +2.0 555,913 + DDA3937_RS02510 0.47 -1.5 555,914 - DDA3937_RS02510 0.47 -1.0 555,944 + DDA3937_RS02510 0.50 +0.8 556,044 + DDA3937_RS02510 0.60 -1.1 556,436 + -0.3 556,437 - +0.9 556,441 - -1.4 556,441 - +0.7 556,480 + -0.1 556,480 + +0.7 556,480 + -0.3 556,480 + -2.5 556,480 + +3.0 556,481 - -0.2 556,500 + -0.5 556,500 + -1.5 556,500 + +0.1 556,500 + -1.2 556,500 + -0.0 556,500 + -0.8 556,500 + -1.8 556,500 + -0.5 556,500 + -1.7 556,500 + -0.7 556,500 + -0.7 556,500 + -0.3 556,501 - -2.0 556,501 - +0.7 556,501 - +1.1 556,501 - -2.7 556,501 - -0.9 556,501 - -0.3 556,501 - +1.8 556,501 - +1.1 556,501 - -1.9 556,501 - -1.3 556,501 - -1.5 556,501 - -1.3 556,501 - +0.2 556,501 - -1.6 556,501 - -1.1 556,501 - -1.8 556,501 - -1.8 556,501 - -0.7 556,501 - +3.0 556,501 - -1.9 556,501 - +1.2 556,557 + +0.1 556,561 - +0.4 556,671 + DDA3937_RS02515 0.23 -1.3 556,712 - DDA3937_RS02515 0.30 -1.5 556,715 - DDA3937_RS02515 0.30 -1.2 556,739 + DDA3937_RS02515 0.35 -1.7 556,747 + DDA3937_RS02515 0.36 -1.5 556,747 + DDA3937_RS02515 0.36 -1.4 556,747 + DDA3937_RS02515 0.36 +0.5 556,747 + DDA3937_RS02515 0.36 -2.9 556,747 + DDA3937_RS02515 0.36 -2.3 556,747 + DDA3937_RS02515 0.36 -0.9 556,747 + DDA3937_RS02515 0.36 -0.4 556,748 - DDA3937_RS02515 0.36 -3.3 556,748 - DDA3937_RS02515 0.36 -0.0 556,748 - DDA3937_RS02515 0.36 -1.7 556,748 - DDA3937_RS02515 0.36 -0.3 556,748 - DDA3937_RS02515 0.36 +0.7 556,748 - DDA3937_RS02515 0.36 -1.5 556,748 - DDA3937_RS02515 0.36 -1.3 556,748 - DDA3937_RS02515 0.36 -0.3 556,774 - DDA3937_RS02515 0.41 -2.9 556,774 - DDA3937_RS02515 0.41 +1.7 556,929 + DDA3937_RS02515 0.68 -2.7 556,929 + DDA3937_RS02515 0.68 -1.2 556,930 - DDA3937_RS02515 0.69 -0.2 557,011 + DDA3937_RS02515 0.83 -0.1 557,011 + DDA3937_RS02515 0.83 -1.6 557,011 + DDA3937_RS02515 0.83 -3.3 557,012 - DDA3937_RS02515 0.83 -0.7 557,012 - DDA3937_RS02515 0.83 +0.2 557,012 - DDA3937_RS02515 0.83 -1.5 557,046 + DDA3937_RS02515 0.89 -0.1 557,046 + DDA3937_RS02515 0.89 +0.9 557,067 + -1.4 557,067 + -0.5 557,067 + +0.5 557,068 - -0.5 557,068 - +0.1 557,105 - -2.4 557,132 - -2.2 557,185 + +1.8 557,185 + -2.0 557,185 + -1.1 557,185 + +0.9 557,185 + +0.1 557,185 + -1.2 557,186 - +0.7 557,186 - +0.3 557,186 - -0.9 557,186 - -1.5 557,186 - -2.0 557,186 - -1.3 557,186 - -0.4 557,186 - -1.3 557,186 - -1.4 557,186 - -0.7 557,186 - +1.1 557,186 - -0.7 557,186 - -0.3 557,186 - -0.5 557,186 - -1.7 557,197 + +0.1 557,198 - -0.2 557,198 - -4.5 557,198 - -1.5 557,198 - -0.2 557,200 + -2.4 557,200 + -0.4 557,200 + -1.9 557,200 + -0.1 557,200 + -1.2 557,200 + +0.1 557,200 + -2.6 557,200 + -2.7 557,201 - -0.8 557,201 - -2.3 557,201 - -1.5 557,201 - -0.2 557,201 - -1.9 557,201 - +0.9 557,201 - +0.0 557,201 - +0.2 557,201 - -2.3 557,201 - -3.1 557,223 - +1.0 557,236 - +0.8 557,253 + -1.7 557,253 + -2.5 557,350 + DDA3937_RS02520 0.10 -0.7 557,351 - DDA3937_RS02520 0.11 -2.0 557,369 - DDA3937_RS02520 0.12 -0.7 557,369 - DDA3937_RS02520 0.12 +2.0
Or see this region's nucleotide sequence