Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02380

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02375 and DDA3937_RS02380 are separated by 283 nucleotidesDDA3937_RS02380 and DDA3937_RS02385 are separated by 52 nucleotides DDA3937_RS02375: DDA3937_RS02375 - IS110-like element ISEch4 family transposase, at 526,432 to 527,436 _RS02375 DDA3937_RS02380: DDA3937_RS02380 - hypothetical protein, at 527,720 to 528,298 _RS02380 DDA3937_RS02385: DDA3937_RS02385 - FAD-dependent 2-octaprenylphenol hydroxylase, at 528,351 to 529,562 _RS02385 Position (kb) 527 528 529Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 527.719 kb on + strandat 527.719 kb on + strandat 527.795 kb on + strand, within DDA3937_RS02380at 527.820 kb on - strand, within DDA3937_RS02380at 527.820 kb on - strand, within DDA3937_RS02380at 527.863 kb on + strand, within DDA3937_RS02380at 527.863 kb on + strandat 527.880 kb on - strand, within DDA3937_RS02380at 527.880 kb on - strand, within DDA3937_RS02380at 527.881 kb on + strand, within DDA3937_RS02380at 527.881 kb on + strand, within DDA3937_RS02380at 527.881 kb on + strand, within DDA3937_RS02380at 527.881 kb on + strand, within DDA3937_RS02380at 527.881 kb on + strand, within DDA3937_RS02380at 527.881 kb on + strand, within DDA3937_RS02380at 527.881 kb on + strand, within DDA3937_RS02380at 527.882 kb on - strand, within DDA3937_RS02380at 527.882 kb on - strand, within DDA3937_RS02380at 527.882 kb on - strand, within DDA3937_RS02380at 527.882 kb on - strand, within DDA3937_RS02380at 527.882 kb on - strand, within DDA3937_RS02380at 527.882 kb on - strand, within DDA3937_RS02380at 527.882 kb on - strand, within DDA3937_RS02380at 527.882 kb on - strandat 527.882 kb on - strand, within DDA3937_RS02380at 527.921 kb on + strand, within DDA3937_RS02380at 527.921 kb on + strand, within DDA3937_RS02380at 527.921 kb on + strand, within DDA3937_RS02380at 527.922 kb on - strand, within DDA3937_RS02380at 527.935 kb on + strand, within DDA3937_RS02380at 527.935 kb on + strand, within DDA3937_RS02380at 527.936 kb on - strand, within DDA3937_RS02380at 527.996 kb on + strand, within DDA3937_RS02380at 528.044 kb on + strand, within DDA3937_RS02380at 528.044 kb on + strand, within DDA3937_RS02380at 528.044 kb on + strandat 528.044 kb on + strand, within DDA3937_RS02380at 528.044 kb on + strand, within DDA3937_RS02380at 528.045 kb on - strand, within DDA3937_RS02380at 528.045 kb on - strand, within DDA3937_RS02380at 528.053 kb on + strand, within DDA3937_RS02380at 528.053 kb on + strand, within DDA3937_RS02380at 528.053 kb on + strand, within DDA3937_RS02380at 528.055 kb on + strand, within DDA3937_RS02380at 528.056 kb on - strand, within DDA3937_RS02380at 528.056 kb on - strand, within DDA3937_RS02380at 528.074 kb on + strand, within DDA3937_RS02380at 528.104 kb on - strand, within DDA3937_RS02380at 528.174 kb on + strand, within DDA3937_RS02380at 528.175 kb on - strand, within DDA3937_RS02380at 528.194 kb on + strand, within DDA3937_RS02380at 528.194 kb on + strand, within DDA3937_RS02380at 528.194 kb on + strand, within DDA3937_RS02380at 528.195 kb on - strand, within DDA3937_RS02380at 528.195 kb on - strand, within DDA3937_RS02380at 528.196 kb on + strand, within DDA3937_RS02380at 528.197 kb on - strand, within DDA3937_RS02380at 528.239 kb on + strand, within DDA3937_RS02380at 528.240 kb on - strandat 528.240 kb on - strand, within DDA3937_RS02380at 528.241 kb on + strandat 528.241 kb on + strandat 528.241 kb on + strandat 528.242 kb on - strandat 528.242 kb on - strandat 528.242 kb on - strandat 528.242 kb on - strandat 528.242 kb on - strandat 528.242 kb on - strandat 528.242 kb on - strandat 528.245 kb on + strandat 528.245 kb on + strandat 528.245 kb on + strandat 528.245 kb on + strandat 528.246 kb on - strandat 528.267 kb on + strandat 528.268 kb on - strandat 528.270 kb on + strandat 528.270 kb on + strandat 528.270 kb on + strandat 528.270 kb on + strandat 528.271 kb on - strandat 528.283 kb on - strandat 528.283 kb on - strandat 528.319 kb on + strandat 528.324 kb on + strandat 528.378 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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527,719 + +0.1
527,719 + +2.0
527,795 + DDA3937_RS02380 0.13 -1.3
527,820 - DDA3937_RS02380 0.17 +1.3
527,820 - DDA3937_RS02380 0.17 +2.2
527,863 + DDA3937_RS02380 0.25 -0.3
527,863 + +0.7
527,880 - DDA3937_RS02380 0.28 -1.8
527,880 - DDA3937_RS02380 0.28 +0.4
527,881 + DDA3937_RS02380 0.28 -0.7
527,881 + DDA3937_RS02380 0.28 -1.3
527,881 + DDA3937_RS02380 0.28 -1.2
527,881 + DDA3937_RS02380 0.28 -1.4
527,881 + DDA3937_RS02380 0.28 +0.6
527,881 + DDA3937_RS02380 0.28 -0.3
527,881 + DDA3937_RS02380 0.28 +0.7
527,882 - DDA3937_RS02380 0.28 +0.4
527,882 - DDA3937_RS02380 0.28 +0.0
527,882 - DDA3937_RS02380 0.28 -1.2
527,882 - DDA3937_RS02380 0.28 -1.0
527,882 - DDA3937_RS02380 0.28 -1.3
527,882 - DDA3937_RS02380 0.28 +0.5
527,882 - DDA3937_RS02380 0.28 -0.2
527,882 - +1.7
527,882 - DDA3937_RS02380 0.28 -1.2
527,921 + DDA3937_RS02380 0.35 -3.1
527,921 + DDA3937_RS02380 0.35 +0.9
527,921 + DDA3937_RS02380 0.35 +0.8
527,922 - DDA3937_RS02380 0.35 +1.3
527,935 + DDA3937_RS02380 0.37 -1.4
527,935 + DDA3937_RS02380 0.37 +2.5
527,936 - DDA3937_RS02380 0.37 +1.1
527,996 + DDA3937_RS02380 0.48 +1.0
528,044 + DDA3937_RS02380 0.56 +0.7
528,044 + DDA3937_RS02380 0.56 +0.2
528,044 + -0.7
528,044 + DDA3937_RS02380 0.56 -3.0
528,044 + DDA3937_RS02380 0.56 -0.5
528,045 - DDA3937_RS02380 0.56 +0.4
528,045 - DDA3937_RS02380 0.56 -1.2
528,053 + DDA3937_RS02380 0.58 -0.1
528,053 + DDA3937_RS02380 0.58 +3.1
528,053 + DDA3937_RS02380 0.58 -0.3
528,055 + DDA3937_RS02380 0.58 +1.2
528,056 - DDA3937_RS02380 0.58 -0.3
528,056 - DDA3937_RS02380 0.58 +0.7
528,074 + DDA3937_RS02380 0.61 -1.8
528,104 - DDA3937_RS02380 0.66 -1.2
528,174 + DDA3937_RS02380 0.78 +0.5
528,175 - DDA3937_RS02380 0.79 -0.9
528,194 + DDA3937_RS02380 0.82 +1.0
528,194 + DDA3937_RS02380 0.82 +0.4
528,194 + DDA3937_RS02380 0.82 -2.0
528,195 - DDA3937_RS02380 0.82 +1.7
528,195 - DDA3937_RS02380 0.82 -0.9
528,196 + DDA3937_RS02380 0.82 -0.7
528,197 - DDA3937_RS02380 0.82 -0.8
528,239 + DDA3937_RS02380 0.90 +1.3
528,240 - +0.7
528,240 - DDA3937_RS02380 0.90 -1.7
528,241 + +0.5
528,241 + -1.3
528,241 + -0.2
528,242 - -2.7
528,242 - +0.8
528,242 - -0.9
528,242 - -1.8
528,242 - -0.8
528,242 - -0.3
528,242 - +3.2
528,245 + +2.5
528,245 + -1.8
528,245 + -2.0
528,245 + +0.4
528,246 - +0.7
528,267 + +1.1
528,268 - +0.3
528,270 + -2.9
528,270 + -0.9
528,270 + +1.1
528,270 + +1.4
528,271 - -0.3
528,283 - -2.3
528,283 - -1.0
528,319 + +0.3
528,324 + +0.9
528,378 + -0.9

Or see this region's nucleotide sequence