Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02350 and DDA3937_RS02355 overlap by 4 nucleotides DDA3937_RS02355 and DDA3937_RS02360 are separated by 76 nucleotides DDA3937_RS02360 and DDA3937_RS02365 overlap by 23 nucleotides
DDA3937_RS02350: DDA3937_RS02350 - ABC transporter ATP-binding protein, at 519,588 to 521,288
_RS02350
DDA3937_RS02355: DDA3937_RS02355 - ABC transporter permease, at 521,285 to 522,124
_RS02355
DDA3937_RS02360: DDA3937_RS02360 - ABC transporter permease, at 522,201 to 523,166
_RS02360
DDA3937_RS02365: DDA3937_RS02365 - ABC transporter substrate-binding protein, at 523,144 to 524,772
_RS02365
Position (kb) 522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 521.309 kb on - strand at 521.537 kb on + strand at 521.538 kb on - strand, within DDA3937_RS02355 at 521.554 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.572 kb on - strand, within DDA3937_RS02355 at 521.572 kb on - strand, within DDA3937_RS02355 at 521.659 kb on - strand, within DDA3937_RS02355 at 521.695 kb on + strand, within DDA3937_RS02355 at 521.696 kb on - strand, within DDA3937_RS02355 at 521.898 kb on + strand, within DDA3937_RS02355 at 521.899 kb on - strand, within DDA3937_RS02355 at 522.041 kb on + strand at 522.042 kb on - strand at 522.042 kb on - strand at 522.100 kb on - strand at 522.118 kb on + strand at 522.142 kb on + strand at 522.142 kb on + strand at 522.142 kb on + strand at 522.142 kb on + strand at 522.143 kb on - strand at 522.149 kb on + strand at 522.172 kb on + strand at 522.172 kb on + strand at 522.172 kb on + strand at 522.172 kb on + strand at 522.173 kb on - strand at 522.173 kb on - strand at 522.173 kb on - strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.175 kb on - strand at 522.175 kb on - strand at 522.175 kb on - strand at 522.175 kb on - strand at 522.180 kb on - strand at 522.188 kb on - strand at 522.190 kb on - strand at 522.190 kb on - strand at 522.190 kb on - strand at 522.253 kb on + strand at 522.253 kb on + strand at 522.254 kb on - strand at 522.254 kb on - strand at 522.356 kb on + strand, within DDA3937_RS02360 at 522.895 kb on + strand, within DDA3937_RS02360 at 522.943 kb on + strand, within DDA3937_RS02360 at 522.943 kb on + strand, within DDA3937_RS02360 at 522.943 kb on + strand, within DDA3937_RS02360 at 522.943 kb on + strand, within DDA3937_RS02360 at 522.943 kb on + strand, within DDA3937_RS02360 at 522.944 kb on - strand, within DDA3937_RS02360 at 523.152 kb on + strand at 523.166 kb on + strand at 523.166 kb on + strand at 523.166 kb on + strand at 523.166 kb on + strand at 523.166 kb on + strand at 523.166 kb on + strand at 523.166 kb on + strand at 523.166 kb on + strand at 523.166 kb on + strand at 523.166 kb on + strand at 523.166 kb on + strand at 523.167 kb on - strand at 523.167 kb on - strand at 523.167 kb on - strand at 523.167 kb on - strand at 523.167 kb on - strand at 523.167 kb on - strand at 523.167 kb on - strand at 523.167 kb on - strand at 523.167 kb on - strand at 523.207 kb on + strand at 523.208 kb on - strand at 523.232 kb on + strand at 523.260 kb on - strand at 523.295 kb on + strand at 523.295 kb on + strand at 523.296 kb on - strand at 523.393 kb on - strand, within DDA3937_RS02365 at 523.393 kb on - strand, within DDA3937_RS02365 at 523.394 kb on + strand, within DDA3937_RS02365 at 523.394 kb on + strand, within DDA3937_RS02365 at 523.394 kb on + strand, within DDA3937_RS02365 at 523.394 kb on + strand, within DDA3937_RS02365 at 523.394 kb on + strand, within DDA3937_RS02365 at 523.394 kb on + strand, within DDA3937_RS02365 at 523.395 kb on - strand, within DDA3937_RS02365 at 523.395 kb on - strand, within DDA3937_RS02365 at 523.395 kb on - strand, within DDA3937_RS02365 at 523.395 kb on - strand, within DDA3937_RS02365 at 523.395 kb on - strand, within DDA3937_RS02365 at 523.395 kb on - strand, within DDA3937_RS02365 at 523.395 kb on - strand, within DDA3937_RS02365 at 523.395 kb on - strand, within DDA3937_RS02365 at 523.395 kb on - strand, within DDA3937_RS02365 at 523.395 kb on - strand, within DDA3937_RS02365 at 523.395 kb on - strand, within DDA3937_RS02365 at 523.395 kb on - strand, within DDA3937_RS02365 at 523.408 kb on + strand, within DDA3937_RS02365 at 523.408 kb on + strand, within DDA3937_RS02365 at 523.445 kb on + strand, within DDA3937_RS02365 at 523.445 kb on + strand, within DDA3937_RS02365 at 523.445 kb on + strand, within DDA3937_RS02365 at 523.446 kb on - strand, within DDA3937_RS02365 at 523.446 kb on - strand, within DDA3937_RS02365 at 523.446 kb on - strand, within DDA3937_RS02365 at 523.446 kb on - strand, within DDA3937_RS02365 at 523.446 kb on - strand, within DDA3937_RS02365 at 523.446 kb on - strand, within DDA3937_RS02365 at 523.446 kb on - strand, within DDA3937_RS02365 at 523.464 kb on - strand, within DDA3937_RS02365 at 523.548 kb on - strand, within DDA3937_RS02365 at 523.739 kb on + strand, within DDA3937_RS02365 at 523.742 kb on + strand, within DDA3937_RS02365 at 523.742 kb on + strand, within DDA3937_RS02365 at 523.743 kb on - strand, within DDA3937_RS02365 at 523.846 kb on + strand, within DDA3937_RS02365 at 523.878 kb on + strand, within DDA3937_RS02365 at 523.879 kb on - strand, within DDA3937_RS02365 at 523.887 kb on - strand, within DDA3937_RS02365 at 524.055 kb on + strand, within DDA3937_RS02365 at 524.063 kb on + strand, within DDA3937_RS02365 at 524.087 kb on + strand, within DDA3937_RS02365 at 524.088 kb on - strand, within DDA3937_RS02365 at 524.088 kb on - strand, within DDA3937_RS02365 at 524.106 kb on - strand, within DDA3937_RS02365 at 524.144 kb on - strand, within DDA3937_RS02365 at 524.160 kb on + strand, within DDA3937_RS02365 at 524.161 kb on - strand, within DDA3937_RS02365
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 521,309 - -1.3 521,537 + +0.3 521,538 - DDA3937_RS02355 0.30 -2.3 521,554 + DDA3937_RS02355 0.32 -1.3 521,571 + DDA3937_RS02355 0.34 -0.9 521,571 + DDA3937_RS02355 0.34 +0.7 521,571 + DDA3937_RS02355 0.34 -1.3 521,571 + DDA3937_RS02355 0.34 +0.4 521,571 + DDA3937_RS02355 0.34 -0.9 521,572 - DDA3937_RS02355 0.34 -0.5 521,572 - DDA3937_RS02355 0.34 +3.2 521,659 - DDA3937_RS02355 0.45 +0.1 521,695 + DDA3937_RS02355 0.49 -0.0 521,696 - DDA3937_RS02355 0.49 -0.3 521,898 + DDA3937_RS02355 0.73 -0.1 521,899 - DDA3937_RS02355 0.73 -2.4 522,041 + +1.7 522,042 - -2.2 522,042 - -0.4 522,100 - -0.3 522,118 + -0.6 522,142 + +0.7 522,142 + +1.2 522,142 + -0.2 522,142 + +0.8 522,143 - -1.8 522,149 + +1.3 522,172 + -0.8 522,172 + +0.9 522,172 + -1.4 522,172 + +1.1 522,173 - +1.9 522,173 - -2.3 522,173 - +0.3 522,174 + +0.5 522,174 + +1.8 522,174 + +0.3 522,174 + -2.6 522,174 + -1.0 522,174 + +2.2 522,174 + -1.4 522,175 - +0.7 522,175 - +0.9 522,175 - -2.1 522,175 - -0.1 522,180 - -1.0 522,188 - +1.9 522,190 - -2.0 522,190 - -1.3 522,190 - +0.0 522,253 + -1.8 522,253 + +1.3 522,254 - +2.4 522,254 - -0.2 522,356 + DDA3937_RS02360 0.16 -1.2 522,895 + DDA3937_RS02360 0.72 +0.8 522,943 + DDA3937_RS02360 0.77 +1.8 522,943 + DDA3937_RS02360 0.77 +1.1 522,943 + DDA3937_RS02360 0.77 -1.3 522,943 + DDA3937_RS02360 0.77 +0.3 522,943 + DDA3937_RS02360 0.77 -0.2 522,944 - DDA3937_RS02360 0.77 +1.0 523,152 + -1.7 523,166 + -1.8 523,166 + +0.2 523,166 + -0.7 523,166 + +1.8 523,166 + +0.1 523,166 + +2.0 523,166 + +0.8 523,166 + -2.2 523,166 + -0.3 523,166 + -2.4 523,166 + -1.7 523,167 - +4.8 523,167 - -1.1 523,167 - +0.8 523,167 - +0.9 523,167 - +0.9 523,167 - +0.5 523,167 - +3.2 523,167 - -0.3 523,167 - -2.6 523,207 + -1.3 523,208 - -0.7 523,232 + +0.5 523,260 - -1.3 523,295 + +0.2 523,295 + -0.3 523,296 - -2.7 523,393 - DDA3937_RS02365 0.15 -1.3 523,393 - DDA3937_RS02365 0.15 -2.2 523,394 + DDA3937_RS02365 0.15 +2.4 523,394 + DDA3937_RS02365 0.15 +0.1 523,394 + DDA3937_RS02365 0.15 +1.7 523,394 + DDA3937_RS02365 0.15 -1.7 523,394 + DDA3937_RS02365 0.15 +1.3 523,394 + DDA3937_RS02365 0.15 -3.3 523,395 - DDA3937_RS02365 0.15 +0.0 523,395 - DDA3937_RS02365 0.15 -2.0 523,395 - DDA3937_RS02365 0.15 +0.8 523,395 - DDA3937_RS02365 0.15 +2.7 523,395 - DDA3937_RS02365 0.15 -2.5 523,395 - DDA3937_RS02365 0.15 -2.8 523,395 - DDA3937_RS02365 0.15 -2.4 523,395 - DDA3937_RS02365 0.15 +2.7 523,395 - DDA3937_RS02365 0.15 -2.8 523,395 - DDA3937_RS02365 0.15 -0.7 523,395 - DDA3937_RS02365 0.15 -1.9 523,395 - DDA3937_RS02365 0.15 +1.1 523,408 + DDA3937_RS02365 0.16 -3.3 523,408 + DDA3937_RS02365 0.16 +1.7 523,445 + DDA3937_RS02365 0.18 +0.1 523,445 + DDA3937_RS02365 0.18 +1.2 523,445 + DDA3937_RS02365 0.18 -1.2 523,446 - DDA3937_RS02365 0.19 +2.7 523,446 - DDA3937_RS02365 0.19 -1.7 523,446 - DDA3937_RS02365 0.19 -2.7 523,446 - DDA3937_RS02365 0.19 -1.8 523,446 - DDA3937_RS02365 0.19 -1.8 523,446 - DDA3937_RS02365 0.19 +1.1 523,446 - DDA3937_RS02365 0.19 +0.9 523,464 - DDA3937_RS02365 0.20 -2.2 523,548 - DDA3937_RS02365 0.25 -3.3 523,739 + DDA3937_RS02365 0.37 +0.4 523,742 + DDA3937_RS02365 0.37 -1.1 523,742 + DDA3937_RS02365 0.37 +1.2 523,743 - DDA3937_RS02365 0.37 -0.4 523,846 + DDA3937_RS02365 0.43 -0.8 523,878 + DDA3937_RS02365 0.45 -3.0 523,879 - DDA3937_RS02365 0.45 +1.1 523,887 - DDA3937_RS02365 0.46 -1.3 524,055 + DDA3937_RS02365 0.56 -0.7 524,063 + DDA3937_RS02365 0.56 +2.7 524,087 + DDA3937_RS02365 0.58 -0.5 524,088 - DDA3937_RS02365 0.58 +2.0 524,088 - DDA3937_RS02365 0.58 -1.3 524,106 - DDA3937_RS02365 0.59 -1.0 524,144 - DDA3937_RS02365 0.61 +1.3 524,160 + DDA3937_RS02365 0.62 -0.9 524,161 - DDA3937_RS02365 0.62 +3.2
Or see this region's nucleotide sequence