Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02295 and DDA3937_RS02300 are separated by 78 nucleotides DDA3937_RS02300 and DDA3937_RS02305 are separated by 560 nucleotides DDA3937_RS02305 and DDA3937_RS23400 are separated by 68 nucleotides
DDA3937_RS02295: DDA3937_RS02295 - IclR family transcriptional regulator, at 508,743 to 509,549
_RS02295
DDA3937_RS02300: DDA3937_RS02300 - MCP four helix bundle domain-containing protein, at 509,628 to 511,217
_RS02300
DDA3937_RS02305: DDA3937_RS02305 - L-rhamnose mutarotase, at 511,778 to 512,092
_RS02305
DDA3937_RS23400: DDA3937_RS23400 - hypothetical protein, at 512,161 to 512,337
_RS23400
Position (kb) 509
510
511
512 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 508.686 kb on + strand at 508.686 kb on + strand at 508.687 kb on - strand at 508.687 kb on - strand at 508.687 kb on - strand at 508.687 kb on - strand at 508.687 kb on - strand at 508.717 kb on + strand at 508.718 kb on - strand at 508.721 kb on - strand at 508.770 kb on - strand at 508.822 kb on + strand at 508.880 kb on + strand, within DDA3937_RS02295 at 508.880 kb on + strand at 508.881 kb on - strand, within DDA3937_RS02295 at 508.956 kb on + strand, within DDA3937_RS02295 at 509.098 kb on - strand, within DDA3937_RS02295 at 509.098 kb on - strand, within DDA3937_RS02295 at 509.098 kb on - strand, within DDA3937_RS02295 at 509.119 kb on + strand, within DDA3937_RS02295 at 509.119 kb on + strand, within DDA3937_RS02295 at 509.119 kb on + strand, within DDA3937_RS02295 at 509.120 kb on - strand, within DDA3937_RS02295 at 509.120 kb on - strand, within DDA3937_RS02295 at 509.120 kb on - strand, within DDA3937_RS02295 at 509.120 kb on - strand, within DDA3937_RS02295 at 509.126 kb on + strand, within DDA3937_RS02295 at 509.126 kb on + strand, within DDA3937_RS02295 at 509.126 kb on + strand, within DDA3937_RS02295 at 509.127 kb on - strand, within DDA3937_RS02295 at 509.136 kb on - strand, within DDA3937_RS02295 at 509.136 kb on - strand, within DDA3937_RS02295 at 509.154 kb on + strand, within DDA3937_RS02295 at 509.154 kb on + strand, within DDA3937_RS02295 at 509.154 kb on + strand, within DDA3937_RS02295 at 509.155 kb on - strand, within DDA3937_RS02295 at 509.155 kb on - strand, within DDA3937_RS02295 at 509.177 kb on - strand, within DDA3937_RS02295 at 509.177 kb on - strand, within DDA3937_RS02295 at 509.177 kb on - strand, within DDA3937_RS02295 at 509.177 kb on - strand, within DDA3937_RS02295 at 509.282 kb on + strand, within DDA3937_RS02295 at 509.282 kb on + strand, within DDA3937_RS02295 at 509.282 kb on + strand at 509.282 kb on + strand, within DDA3937_RS02295 at 509.282 kb on + strand, within DDA3937_RS02295 at 509.283 kb on - strand, within DDA3937_RS02295 at 509.283 kb on - strand, within DDA3937_RS02295 at 509.303 kb on + strand, within DDA3937_RS02295 at 509.303 kb on + strand, within DDA3937_RS02295 at 509.304 kb on - strand, within DDA3937_RS02295 at 509.304 kb on - strand, within DDA3937_RS02295 at 509.304 kb on - strand, within DDA3937_RS02295 at 509.304 kb on - strand, within DDA3937_RS02295 at 509.422 kb on - strand, within DDA3937_RS02295 at 509.422 kb on - strand, within DDA3937_RS02295 at 509.547 kb on + strand at 509.547 kb on + strand at 509.547 kb on + strand at 509.547 kb on + strand at 509.547 kb on + strand at 509.547 kb on + strand at 509.548 kb on - strand at 509.548 kb on - strand at 509.551 kb on + strand at 509.582 kb on + strand at 509.689 kb on - strand at 510.003 kb on + strand, within DDA3937_RS02300 at 510.003 kb on + strand, within DDA3937_RS02300 at 510.003 kb on + strand, within DDA3937_RS02300 at 510.004 kb on - strand, within DDA3937_RS02300 at 510.061 kb on - strand, within DDA3937_RS02300 at 510.119 kb on + strand, within DDA3937_RS02300 at 510.119 kb on + strand, within DDA3937_RS02300 at 510.120 kb on - strand, within DDA3937_RS02300 at 510.122 kb on + strand, within DDA3937_RS02300 at 510.161 kb on + strand, within DDA3937_RS02300 at 510.161 kb on + strand, within DDA3937_RS02300 at 510.161 kb on + strand, within DDA3937_RS02300 at 510.161 kb on + strand, within DDA3937_RS02300 at 510.162 kb on - strand, within DDA3937_RS02300 at 510.162 kb on - strand, within DDA3937_RS02300 at 510.162 kb on - strand, within DDA3937_RS02300 at 510.480 kb on + strand, within DDA3937_RS02300 at 510.481 kb on - strand, within DDA3937_RS02300 at 510.481 kb on - strand, within DDA3937_RS02300 at 510.485 kb on + strand, within DDA3937_RS02300 at 510.485 kb on + strand, within DDA3937_RS02300 at 510.486 kb on - strand, within DDA3937_RS02300 at 510.486 kb on - strand, within DDA3937_RS02300 at 510.494 kb on + strand, within DDA3937_RS02300 at 510.494 kb on + strand, within DDA3937_RS02300 at 510.494 kb on + strand, within DDA3937_RS02300 at 510.494 kb on + strand, within DDA3937_RS02300 at 510.494 kb on + strand, within DDA3937_RS02300 at 510.495 kb on - strand, within DDA3937_RS02300 at 510.495 kb on - strand, within DDA3937_RS02300 at 510.495 kb on - strand, within DDA3937_RS02300 at 510.495 kb on - strand, within DDA3937_RS02300 at 510.495 kb on - strand, within DDA3937_RS02300 at 510.638 kb on + strand, within DDA3937_RS02300 at 510.639 kb on - strand, within DDA3937_RS02300 at 510.639 kb on - strand, within DDA3937_RS02300 at 510.639 kb on - strand, within DDA3937_RS02300 at 510.639 kb on - strand, within DDA3937_RS02300 at 510.641 kb on - strand, within DDA3937_RS02300 at 510.641 kb on - strand, within DDA3937_RS02300 at 510.641 kb on - strand, within DDA3937_RS02300 at 510.641 kb on - strand, within DDA3937_RS02300 at 510.641 kb on - strand, within DDA3937_RS02300 at 510.745 kb on + strand, within DDA3937_RS02300 at 510.745 kb on + strand, within DDA3937_RS02300 at 510.746 kb on - strand, within DDA3937_RS02300 at 510.746 kb on - strand, within DDA3937_RS02300 at 510.746 kb on - strand, within DDA3937_RS02300 at 510.746 kb on - strand, within DDA3937_RS02300 at 510.749 kb on + strand, within DDA3937_RS02300 at 510.848 kb on + strand, within DDA3937_RS02300 at 510.855 kb on + strand at 510.911 kb on - strand, within DDA3937_RS02300 at 510.990 kb on - strand, within DDA3937_RS02300 at 511.000 kb on + strand, within DDA3937_RS02300 at 511.000 kb on + strand, within DDA3937_RS02300 at 511.000 kb on + strand, within DDA3937_RS02300 at 511.000 kb on + strand, within DDA3937_RS02300 at 511.000 kb on + strand, within DDA3937_RS02300 at 511.000 kb on + strand, within DDA3937_RS02300 at 511.000 kb on + strand, within DDA3937_RS02300 at 511.000 kb on + strand, within DDA3937_RS02300 at 511.000 kb on + strand, within DDA3937_RS02300 at 511.000 kb on + strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand at 511.001 kb on - strand, within DDA3937_RS02300 at 511.001 kb on - strand, within DDA3937_RS02300 at 511.005 kb on + strand, within DDA3937_RS02300 at 511.006 kb on - strand, within DDA3937_RS02300 at 511.006 kb on - strand, within DDA3937_RS02300 at 511.006 kb on - strand, within DDA3937_RS02300 at 511.006 kb on - strand, within DDA3937_RS02300 at 511.006 kb on - strand, within DDA3937_RS02300 at 511.052 kb on + strand, within DDA3937_RS02300 at 511.053 kb on - strand, within DDA3937_RS02300 at 511.053 kb on - strand, within DDA3937_RS02300 at 511.054 kb on + strand, within DDA3937_RS02300 at 511.054 kb on + strand, within DDA3937_RS02300 at 511.054 kb on + strand, within DDA3937_RS02300 at 511.084 kb on + strand at 511.103 kb on + strand at 511.120 kb on + strand at 511.120 kb on + strand at 511.120 kb on + strand at 511.120 kb on + strand at 511.120 kb on + strand at 511.121 kb on - strand at 511.121 kb on - strand at 511.244 kb on - strand at 511.244 kb on - strand at 511.244 kb on - strand at 511.263 kb on + strand at 511.458 kb on + strand at 511.492 kb on - strand at 511.575 kb on + strand at 511.576 kb on - strand at 511.579 kb on + strand at 511.585 kb on + strand at 511.585 kb on + strand at 511.604 kb on + strand at 511.604 kb on + strand at 511.605 kb on - strand at 511.605 kb on - strand at 511.625 kb on + strand at 511.625 kb on + strand at 511.626 kb on - strand at 511.626 kb on - strand at 511.626 kb on - strand at 511.692 kb on - strand at 511.712 kb on + strand at 511.712 kb on + strand at 511.712 kb on + strand at 511.712 kb on + strand at 511.712 kb on + strand at 511.713 kb on - strand at 511.713 kb on - strand at 511.713 kb on - strand at 511.713 kb on - strand at 511.713 kb on - strand at 511.760 kb on - strand at 511.775 kb on + strand at 511.776 kb on - strand at 511.776 kb on - strand at 511.779 kb on + strand at 511.780 kb on - strand at 511.857 kb on + strand, within DDA3937_RS02305 at 511.857 kb on + strand, within DDA3937_RS02305 at 511.858 kb on - strand, within DDA3937_RS02305 at 511.929 kb on + strand, within DDA3937_RS02305 at 511.930 kb on - strand, within DDA3937_RS02305 at 511.930 kb on - strand, within DDA3937_RS02305 at 511.971 kb on + strand, within DDA3937_RS02305 at 511.971 kb on + strand, within DDA3937_RS02305 at 511.971 kb on + strand, within DDA3937_RS02305 at 511.972 kb on - strand, within DDA3937_RS02305 at 511.972 kb on - strand, within DDA3937_RS02305 at 511.972 kb on - strand, within DDA3937_RS02305 at 511.972 kb on - strand at 512.040 kb on + strand, within DDA3937_RS02305 at 512.041 kb on - strand, within DDA3937_RS02305 at 512.041 kb on - strand, within DDA3937_RS02305 at 512.119 kb on + strand at 512.119 kb on + strand at 512.119 kb on + strand at 512.119 kb on + strand at 512.120 kb on - strand at 512.120 kb on - strand at 512.120 kb on - strand at 512.149 kb on + strand at 512.149 kb on + strand at 512.149 kb on + strand at 512.149 kb on + strand at 512.149 kb on + strand at 512.150 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 508,686 + -1.5 508,686 + -1.0 508,687 - +1.7 508,687 - -2.0 508,687 - +2.0 508,687 - +2.2 508,687 - -1.8 508,717 + +1.2 508,718 - -2.6 508,721 - -2.2 508,770 - -2.3 508,822 + -1.9 508,880 + DDA3937_RS02295 0.17 +0.1 508,880 + +3.4 508,881 - DDA3937_RS02295 0.17 -0.7 508,956 + DDA3937_RS02295 0.26 -2.3 509,098 - DDA3937_RS02295 0.44 -0.3 509,098 - DDA3937_RS02295 0.44 -0.7 509,098 - DDA3937_RS02295 0.44 +1.1 509,119 + DDA3937_RS02295 0.47 -2.4 509,119 + DDA3937_RS02295 0.47 -1.9 509,119 + DDA3937_RS02295 0.47 -2.3 509,120 - DDA3937_RS02295 0.47 +0.8 509,120 - DDA3937_RS02295 0.47 +1.7 509,120 - DDA3937_RS02295 0.47 -0.2 509,120 - DDA3937_RS02295 0.47 -1.8 509,126 + DDA3937_RS02295 0.47 +0.3 509,126 + DDA3937_RS02295 0.47 -0.3 509,126 + DDA3937_RS02295 0.47 -1.3 509,127 - DDA3937_RS02295 0.48 +0.3 509,136 - DDA3937_RS02295 0.49 +0.4 509,136 - DDA3937_RS02295 0.49 +1.4 509,154 + DDA3937_RS02295 0.51 -0.9 509,154 + DDA3937_RS02295 0.51 -1.9 509,154 + DDA3937_RS02295 0.51 +0.1 509,155 - DDA3937_RS02295 0.51 +1.3 509,155 - DDA3937_RS02295 0.51 +1.9 509,177 - DDA3937_RS02295 0.54 -2.3 509,177 - DDA3937_RS02295 0.54 -1.3 509,177 - DDA3937_RS02295 0.54 +0.9 509,177 - DDA3937_RS02295 0.54 +0.7 509,282 + DDA3937_RS02295 0.67 -2.9 509,282 + DDA3937_RS02295 0.67 -0.7 509,282 + +0.1 509,282 + DDA3937_RS02295 0.67 +0.7 509,282 + DDA3937_RS02295 0.67 -0.9 509,283 - DDA3937_RS02295 0.67 +1.1 509,283 - DDA3937_RS02295 0.67 -1.0 509,303 + DDA3937_RS02295 0.69 +0.8 509,303 + DDA3937_RS02295 0.69 -2.7 509,304 - DDA3937_RS02295 0.70 -1.2 509,304 - DDA3937_RS02295 0.70 +1.0 509,304 - DDA3937_RS02295 0.70 -1.2 509,304 - DDA3937_RS02295 0.70 +0.0 509,422 - DDA3937_RS02295 0.84 +0.4 509,422 - DDA3937_RS02295 0.84 -0.5 509,547 + -1.3 509,547 + -1.5 509,547 + -1.3 509,547 + -0.9 509,547 + -2.2 509,547 + -1.8 509,548 - -0.9 509,548 - +0.1 509,551 + +1.1 509,582 + -2.4 509,689 - -1.4 510,003 + DDA3937_RS02300 0.24 -0.3 510,003 + DDA3937_RS02300 0.24 +1.0 510,003 + DDA3937_RS02300 0.24 +0.9 510,004 - DDA3937_RS02300 0.24 +1.5 510,061 - DDA3937_RS02300 0.27 -0.2 510,119 + DDA3937_RS02300 0.31 -2.2 510,119 + DDA3937_RS02300 0.31 +0.7 510,120 - DDA3937_RS02300 0.31 +0.5 510,122 + DDA3937_RS02300 0.31 +0.8 510,161 + DDA3937_RS02300 0.34 +1.4 510,161 + DDA3937_RS02300 0.34 -2.2 510,161 + DDA3937_RS02300 0.34 -0.8 510,161 + DDA3937_RS02300 0.34 -1.9 510,162 - DDA3937_RS02300 0.34 -3.8 510,162 - DDA3937_RS02300 0.34 -1.3 510,162 - DDA3937_RS02300 0.34 +1.0 510,480 + DDA3937_RS02300 0.54 -2.6 510,481 - DDA3937_RS02300 0.54 +1.8 510,481 - DDA3937_RS02300 0.54 -0.7 510,485 + DDA3937_RS02300 0.54 -1.2 510,485 + DDA3937_RS02300 0.54 +0.1 510,486 - DDA3937_RS02300 0.54 -0.9 510,486 - DDA3937_RS02300 0.54 +1.0 510,494 + DDA3937_RS02300 0.54 +0.5 510,494 + DDA3937_RS02300 0.54 +0.4 510,494 + DDA3937_RS02300 0.54 -2.9 510,494 + DDA3937_RS02300 0.54 +0.6 510,494 + DDA3937_RS02300 0.54 -0.1 510,495 - DDA3937_RS02300 0.55 +1.7 510,495 - DDA3937_RS02300 0.55 +1.1 510,495 - DDA3937_RS02300 0.55 -1.2 510,495 - DDA3937_RS02300 0.55 +1.4 510,495 - DDA3937_RS02300 0.55 -1.7 510,638 + DDA3937_RS02300 0.64 -2.0 510,639 - DDA3937_RS02300 0.64 -0.9 510,639 - DDA3937_RS02300 0.64 -1.2 510,639 - DDA3937_RS02300 0.64 -0.7 510,639 - DDA3937_RS02300 0.64 +0.6 510,641 - DDA3937_RS02300 0.64 -1.9 510,641 - DDA3937_RS02300 0.64 -2.0 510,641 - DDA3937_RS02300 0.64 -0.7 510,641 - DDA3937_RS02300 0.64 -0.3 510,641 - DDA3937_RS02300 0.64 +0.5 510,745 + DDA3937_RS02300 0.70 +0.2 510,745 + DDA3937_RS02300 0.70 -1.5 510,746 - DDA3937_RS02300 0.70 -0.1 510,746 - DDA3937_RS02300 0.70 +2.8 510,746 - DDA3937_RS02300 0.70 -2.8 510,746 - DDA3937_RS02300 0.70 -2.9 510,749 + DDA3937_RS02300 0.71 -1.2 510,848 + DDA3937_RS02300 0.77 +0.7 510,855 + -1.2 510,911 - DDA3937_RS02300 0.81 +0.5 510,990 - DDA3937_RS02300 0.86 -2.7 511,000 + DDA3937_RS02300 0.86 -1.9 511,000 + DDA3937_RS02300 0.86 -1.2 511,000 + DDA3937_RS02300 0.86 -0.2 511,000 + DDA3937_RS02300 0.86 -2.0 511,000 + DDA3937_RS02300 0.86 +0.5 511,000 + DDA3937_RS02300 0.86 +0.7 511,000 + DDA3937_RS02300 0.86 -2.3 511,000 + DDA3937_RS02300 0.86 -1.4 511,000 + DDA3937_RS02300 0.86 +0.1 511,000 + DDA3937_RS02300 0.86 +0.5 511,001 - DDA3937_RS02300 0.86 +0.7 511,001 - DDA3937_RS02300 0.86 +1.4 511,001 - DDA3937_RS02300 0.86 -0.1 511,001 - DDA3937_RS02300 0.86 +0.8 511,001 - DDA3937_RS02300 0.86 -1.1 511,001 - DDA3937_RS02300 0.86 -1.9 511,001 - DDA3937_RS02300 0.86 -2.5 511,001 - DDA3937_RS02300 0.86 -1.8 511,001 - DDA3937_RS02300 0.86 +0.7 511,001 - DDA3937_RS02300 0.86 -1.9 511,001 - DDA3937_RS02300 0.86 -0.8 511,001 - DDA3937_RS02300 0.86 -0.3 511,001 - DDA3937_RS02300 0.86 -2.5 511,001 - +0.1 511,001 - DDA3937_RS02300 0.86 -1.1 511,001 - DDA3937_RS02300 0.86 -0.1 511,005 + DDA3937_RS02300 0.87 +0.8 511,006 - DDA3937_RS02300 0.87 -2.3 511,006 - DDA3937_RS02300 0.87 -2.3 511,006 - DDA3937_RS02300 0.87 +2.0 511,006 - DDA3937_RS02300 0.87 +1.3 511,006 - DDA3937_RS02300 0.87 +1.7 511,052 + DDA3937_RS02300 0.90 -0.3 511,053 - DDA3937_RS02300 0.90 -0.9 511,053 - DDA3937_RS02300 0.90 +0.7 511,054 + DDA3937_RS02300 0.90 +0.7 511,054 + DDA3937_RS02300 0.90 -1.7 511,054 + DDA3937_RS02300 0.90 +0.7 511,084 + +1.7 511,103 + -0.2 511,120 + +0.5 511,120 + -2.8 511,120 + +0.2 511,120 + +0.5 511,120 + +0.0 511,121 - -0.9 511,121 - -2.0 511,244 - -2.8 511,244 - +1.1 511,244 - +0.7 511,263 + +1.8 511,458 + +1.2 511,492 - -0.3 511,575 + +1.7 511,576 - -2.7 511,579 + -0.1 511,585 + +0.1 511,585 + +0.7 511,604 + +0.9 511,604 + +0.7 511,605 - -0.8 511,605 - -0.7 511,625 + -1.9 511,625 + +0.2 511,626 - -2.5 511,626 - -1.9 511,626 - -2.9 511,692 - -1.2 511,712 + +0.0 511,712 + +0.2 511,712 + -2.0 511,712 + +2.0 511,712 + -0.7 511,713 - +1.1 511,713 - -2.9 511,713 - -0.7 511,713 - -0.3 511,713 - +3.1 511,760 - +0.1 511,775 + -1.3 511,776 - -1.6 511,776 - -2.8 511,779 + -1.7 511,780 - -1.7 511,857 + DDA3937_RS02305 0.25 -1.0 511,857 + DDA3937_RS02305 0.25 +0.2 511,858 - DDA3937_RS02305 0.25 +0.6 511,929 + DDA3937_RS02305 0.48 -0.2 511,930 - DDA3937_RS02305 0.48 -3.0 511,930 - DDA3937_RS02305 0.48 -0.2 511,971 + DDA3937_RS02305 0.61 +0.8 511,971 + DDA3937_RS02305 0.61 -0.4 511,971 + DDA3937_RS02305 0.61 -0.6 511,972 - DDA3937_RS02305 0.62 -1.8 511,972 - DDA3937_RS02305 0.62 +0.6 511,972 - DDA3937_RS02305 0.62 -2.2 511,972 - -0.7 512,040 + DDA3937_RS02305 0.83 -1.5 512,041 - DDA3937_RS02305 0.83 +0.1 512,041 - DDA3937_RS02305 0.83 +0.2 512,119 + +2.2 512,119 + +0.1 512,119 + -2.3 512,119 + +0.1 512,120 - +2.4 512,120 - -2.3 512,120 - -3.1 512,149 + -0.2 512,149 + -2.6 512,149 + -0.5 512,149 + +0.7 512,149 + -0.1 512,150 - +0.9
Or see this region's nucleotide sequence