Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02240

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02235 and DDA3937_RS02240 are separated by 101 nucleotidesDDA3937_RS02240 and DDA3937_RS02245 overlap by 4 nucleotidesDDA3937_RS02245 and DDA3937_RS02250 are separated by 40 nucleotides DDA3937_RS02235: DDA3937_RS02235 - ABC transporter permease, at 495,397 to 496,323 _RS02235 DDA3937_RS02240: DDA3937_RS02240 - ATP-binding cassette domain-containing protein, at 496,425 to 497,399 _RS02240 DDA3937_RS02245: DDA3937_RS02245 - ABC transporter ATP-binding protein, at 497,396 to 498,259 _RS02245 DDA3937_RS02250: DDA3937_RS02250 - M20 family metallopeptidase, at 498,300 to 499,718 _RS02250 Position (kb) 496 497 498Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 495.546 kb on + strand, within DDA3937_RS02235at 495.546 kb on + strand, within DDA3937_RS02235at 495.546 kb on + strand, within DDA3937_RS02235at 495.547 kb on - strand, within DDA3937_RS02235at 495.547 kb on - strand, within DDA3937_RS02235at 495.547 kb on - strand, within DDA3937_RS02235at 495.547 kb on - strand, within DDA3937_RS02235at 495.547 kb on - strand, within DDA3937_RS02235at 495.547 kb on - strandat 495.547 kb on - strand, within DDA3937_RS02235at 495.547 kb on - strand, within DDA3937_RS02235at 495.549 kb on - strand, within DDA3937_RS02235at 495.549 kb on - strand, within DDA3937_RS02235at 495.549 kb on - strand, within DDA3937_RS02235at 495.549 kb on - strand, within DDA3937_RS02235at 495.549 kb on - strand, within DDA3937_RS02235at 495.549 kb on - strand, within DDA3937_RS02235at 495.592 kb on + strand, within DDA3937_RS02235at 495.689 kb on - strand, within DDA3937_RS02235at 495.793 kb on + strand, within DDA3937_RS02235at 495.826 kb on + strand, within DDA3937_RS02235at 495.827 kb on - strand, within DDA3937_RS02235at 495.827 kb on - strand, within DDA3937_RS02235at 495.827 kb on - strand, within DDA3937_RS02235at 495.827 kb on - strand, within DDA3937_RS02235at 495.827 kb on - strand, within DDA3937_RS02235at 495.827 kb on - strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strandat 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.201 kb on + strand, within DDA3937_RS02235at 496.202 kb on - strand, within DDA3937_RS02235at 496.202 kb on - strand, within DDA3937_RS02235at 496.202 kb on - strand, within DDA3937_RS02235at 496.331 kb on - strandat 496.331 kb on - strandat 496.349 kb on + strandat 496.349 kb on + strandat 496.350 kb on - strandat 496.350 kb on - strandat 496.350 kb on - strandat 496.350 kb on - strandat 496.355 kb on + strandat 496.355 kb on + strandat 496.355 kb on + strandat 496.355 kb on + strandat 496.355 kb on + strandat 496.355 kb on + strandat 496.355 kb on + strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.356 kb on - strandat 496.371 kb on - strandat 496.815 kb on + strand, within DDA3937_RS02240at 496.815 kb on + strand, within DDA3937_RS02240at 496.815 kb on + strand, within DDA3937_RS02240at 497.014 kb on + strand, within DDA3937_RS02240at 497.014 kb on + strand, within DDA3937_RS02240at 497.015 kb on - strand, within DDA3937_RS02240at 497.015 kb on - strand, within DDA3937_RS02240at 497.015 kb on - strand, within DDA3937_RS02240at 497.015 kb on - strand, within DDA3937_RS02240at 497.100 kb on + strand, within DDA3937_RS02240at 497.100 kb on + strand, within DDA3937_RS02240at 497.100 kb on + strand, within DDA3937_RS02240at 497.101 kb on - strand, within DDA3937_RS02240at 497.101 kb on - strand, within DDA3937_RS02240at 497.164 kb on - strand, within DDA3937_RS02240at 497.164 kb on - strand, within DDA3937_RS02240at 497.164 kb on - strand, within DDA3937_RS02240at 497.164 kb on - strand, within DDA3937_RS02240at 497.332 kb on - strandat 497.332 kb on - strandat 497.396 kb on - strandat 497.741 kb on + strand, within DDA3937_RS02245at 497.742 kb on - strand, within DDA3937_RS02245at 497.753 kb on - strand, within DDA3937_RS02245at 497.875 kb on + strand, within DDA3937_RS02245at 497.875 kb on + strand, within DDA3937_RS02245at 497.875 kb on + strand, within DDA3937_RS02245at 497.875 kb on + strand, within DDA3937_RS02245at 497.876 kb on - strand, within DDA3937_RS02245at 497.876 kb on - strand, within DDA3937_RS02245at 497.876 kb on - strand, within DDA3937_RS02245at 497.876 kb on - strand, within DDA3937_RS02245at 497.888 kb on + strand, within DDA3937_RS02245at 498.004 kb on - strand, within DDA3937_RS02245at 498.020 kb on - strand, within DDA3937_RS02245at 498.059 kb on + strand, within DDA3937_RS02245at 498.059 kb on + strand, within DDA3937_RS02245at 498.059 kb on + strand, within DDA3937_RS02245at 498.060 kb on - strand, within DDA3937_RS02245at 498.060 kb on - strand, within DDA3937_RS02245at 498.060 kb on - strand, within DDA3937_RS02245at 498.095 kb on + strand, within DDA3937_RS02245at 498.095 kb on + strand, within DDA3937_RS02245at 498.096 kb on - strand, within DDA3937_RS02245at 498.096 kb on - strand, within DDA3937_RS02245at 498.125 kb on - strand, within DDA3937_RS02245at 498.162 kb on + strand, within DDA3937_RS02245at 498.185 kb on + strandat 498.186 kb on - strandat 498.186 kb on - strandat 498.186 kb on - strandat 498.186 kb on - strandat 498.188 kb on - strandat 498.257 kb on + strandat 498.257 kb on + strandat 498.274 kb on - strandat 498.336 kb on + strandat 498.337 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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495,546 + DDA3937_RS02235 0.16 -1.3
495,546 + DDA3937_RS02235 0.16 -1.1
495,546 + DDA3937_RS02235 0.16 +1.1
495,547 - DDA3937_RS02235 0.16 -0.7
495,547 - DDA3937_RS02235 0.16 -2.5
495,547 - DDA3937_RS02235 0.16 +0.4
495,547 - DDA3937_RS02235 0.16 -4.1
495,547 - DDA3937_RS02235 0.16 +0.7
495,547 - +0.7
495,547 - DDA3937_RS02235 0.16 +1.8
495,547 - DDA3937_RS02235 0.16 +1.2
495,549 - DDA3937_RS02235 0.16 -0.9
495,549 - DDA3937_RS02235 0.16 +1.7
495,549 - DDA3937_RS02235 0.16 +1.9
495,549 - DDA3937_RS02235 0.16 +1.0
495,549 - DDA3937_RS02235 0.16 +1.2
495,549 - DDA3937_RS02235 0.16 +0.2
495,592 + DDA3937_RS02235 0.21 -2.3
495,689 - DDA3937_RS02235 0.31 +0.8
495,793 + DDA3937_RS02235 0.43 +0.7
495,826 + DDA3937_RS02235 0.46 +4.5
495,827 - DDA3937_RS02235 0.46 -0.4
495,827 - DDA3937_RS02235 0.46 +1.1
495,827 - DDA3937_RS02235 0.46 +1.7
495,827 - DDA3937_RS02235 0.46 +0.8
495,827 - DDA3937_RS02235 0.46 -0.7
495,827 - DDA3937_RS02235 0.46 +1.2
496,201 + DDA3937_RS02235 0.87 +0.3
496,201 + DDA3937_RS02235 0.87 +0.1
496,201 + DDA3937_RS02235 0.87 -0.9
496,201 + DDA3937_RS02235 0.87 -0.1
496,201 + DDA3937_RS02235 0.87 +0.3
496,201 + DDA3937_RS02235 0.87 -1.0
496,201 + +3.2
496,201 + DDA3937_RS02235 0.87 -0.0
496,201 + DDA3937_RS02235 0.87 -1.2
496,201 + DDA3937_RS02235 0.87 -0.9
496,202 - DDA3937_RS02235 0.87 -1.5
496,202 - DDA3937_RS02235 0.87 -2.6
496,202 - DDA3937_RS02235 0.87 +0.1
496,331 - -2.2
496,331 - -2.9
496,349 + +3.1
496,349 + +0.1
496,350 - -1.5
496,350 - -0.7
496,350 - -0.3
496,350 - +0.4
496,355 + -1.9
496,355 + +0.8
496,355 + -1.5
496,355 + -0.4
496,355 + +0.5
496,355 + -0.4
496,355 + +0.2
496,356 - +0.7
496,356 - +0.8
496,356 - -1.2
496,356 - -0.3
496,356 - -3.6
496,356 - -1.3
496,356 - -0.5
496,356 - -0.8
496,371 - -1.2
496,815 + DDA3937_RS02240 0.40 -2.8
496,815 + DDA3937_RS02240 0.40 -0.3
496,815 + DDA3937_RS02240 0.40 +1.2
497,014 + DDA3937_RS02240 0.60 +0.7
497,014 + DDA3937_RS02240 0.60 +0.7
497,015 - DDA3937_RS02240 0.61 -1.8
497,015 - DDA3937_RS02240 0.61 -0.5
497,015 - DDA3937_RS02240 0.61 +3.5
497,015 - DDA3937_RS02240 0.61 -2.4
497,100 + DDA3937_RS02240 0.69 +0.5
497,100 + DDA3937_RS02240 0.69 +2.1
497,100 + DDA3937_RS02240 0.69 +0.5
497,101 - DDA3937_RS02240 0.69 -0.9
497,101 - DDA3937_RS02240 0.69 +1.5
497,164 - DDA3937_RS02240 0.76 -2.7
497,164 - DDA3937_RS02240 0.76 +0.1
497,164 - DDA3937_RS02240 0.76 +2.2
497,164 - DDA3937_RS02240 0.76 -0.1
497,332 - -2.4
497,332 - -1.1
497,396 - -4.6
497,741 + DDA3937_RS02245 0.40 -0.3
497,742 - DDA3937_RS02245 0.40 -3.0
497,753 - DDA3937_RS02245 0.41 +0.2
497,875 + DDA3937_RS02245 0.55 +0.3
497,875 + DDA3937_RS02245 0.55 -0.7
497,875 + DDA3937_RS02245 0.55 -0.7
497,875 + DDA3937_RS02245 0.55 +1.8
497,876 - DDA3937_RS02245 0.56 +0.2
497,876 - DDA3937_RS02245 0.56 -0.8
497,876 - DDA3937_RS02245 0.56 -0.2
497,876 - DDA3937_RS02245 0.56 +0.3
497,888 + DDA3937_RS02245 0.57 -2.7
498,004 - DDA3937_RS02245 0.70 -0.3
498,020 - DDA3937_RS02245 0.72 -2.4
498,059 + DDA3937_RS02245 0.77 +0.9
498,059 + DDA3937_RS02245 0.77 -0.3
498,059 + DDA3937_RS02245 0.77 -1.2
498,060 - DDA3937_RS02245 0.77 +0.3
498,060 - DDA3937_RS02245 0.77 -1.2
498,060 - DDA3937_RS02245 0.77 -0.2
498,095 + DDA3937_RS02245 0.81 +0.6
498,095 + DDA3937_RS02245 0.81 -0.3
498,096 - DDA3937_RS02245 0.81 -1.6
498,096 - DDA3937_RS02245 0.81 -0.9
498,125 - DDA3937_RS02245 0.84 +0.2
498,162 + DDA3937_RS02245 0.89 +3.2
498,185 + +1.4
498,186 - -0.9
498,186 - -0.7
498,186 - -1.5
498,186 - -0.5
498,188 - -0.7
498,257 + -1.8
498,257 + +0.7
498,274 - -1.2
498,336 + -1.7
498,337 - +0.4

Or see this region's nucleotide sequence