Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02200 and DDA3937_RS02205 are separated by 102 nucleotides DDA3937_RS02205 and DDA3937_RS02210 are separated by 71 nucleotides DDA3937_RS02210 and DDA3937_RS02215 are separated by 113 nucleotides DDA3937_RS02215 and DDA3937_RS02220 are separated by 70 nucleotides
DDA3937_RS02200: DDA3937_RS02200 - SDR family oxidoreductase, at 488,635 to 489,432
_RS02200
DDA3937_RS02205: DDA3937_RS02205 - type-1Aa cytolytic delta-endotoxin, at 489,535 to 490,194
_RS02205
DDA3937_RS02210: DDA3937_RS02210 - type-1Ba cytolytic delta-endotoxin, at 490,266 to 490,877
_RS02210
DDA3937_RS02215: DDA3937_RS02215 - type-2Aa cytolytic delta-endotoxin, at 490,991 to 491,590
_RS02215
DDA3937_RS02220: DDA3937_RS02220 - delta-endotoxin CytB, at 491,661 to 492,296
_RS02220
Position (kb) 490
491 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 489.300 kb on - strand, within DDA3937_RS02200 at 489.382 kb on + strand at 489.383 kb on - strand at 489.383 kb on - strand at 489.383 kb on - strand at 489.402 kb on + strand at 489.403 kb on - strand at 489.544 kb on + strand at 489.545 kb on - strand at 489.584 kb on + strand at 489.584 kb on + strand at 489.584 kb on + strand at 489.584 kb on + strand at 489.584 kb on + strand at 489.585 kb on - strand at 489.585 kb on - strand at 489.587 kb on + strand at 489.587 kb on + strand at 489.587 kb on + strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.610 kb on - strand, within DDA3937_RS02205 at 489.700 kb on + strand, within DDA3937_RS02205 at 489.701 kb on - strand, within DDA3937_RS02205 at 489.701 kb on - strand, within DDA3937_RS02205 at 489.701 kb on - strand, within DDA3937_RS02205 at 489.705 kb on + strand, within DDA3937_RS02205 at 489.713 kb on + strand, within DDA3937_RS02205 at 489.713 kb on + strand, within DDA3937_RS02205 at 489.713 kb on + strand, within DDA3937_RS02205 at 489.714 kb on - strand, within DDA3937_RS02205 at 489.714 kb on - strand, within DDA3937_RS02205 at 489.714 kb on - strand, within DDA3937_RS02205 at 489.720 kb on + strand, within DDA3937_RS02205 at 489.721 kb on - strand at 489.795 kb on + strand, within DDA3937_RS02205 at 489.796 kb on - strand, within DDA3937_RS02205 at 489.796 kb on - strand, within DDA3937_RS02205 at 489.858 kb on + strand, within DDA3937_RS02205 at 489.859 kb on - strand, within DDA3937_RS02205 at 489.859 kb on - strand, within DDA3937_RS02205 at 489.929 kb on - strand, within DDA3937_RS02205 at 489.958 kb on - strand, within DDA3937_RS02205 at 489.958 kb on - strand, within DDA3937_RS02205 at 489.958 kb on - strand, within DDA3937_RS02205 at 490.038 kb on + strand, within DDA3937_RS02205 at 490.038 kb on + strand, within DDA3937_RS02205 at 490.039 kb on - strand, within DDA3937_RS02205 at 490.040 kb on + strand, within DDA3937_RS02205 at 490.040 kb on + strand, within DDA3937_RS02205 at 490.040 kb on + strand, within DDA3937_RS02205 at 490.174 kb on + strand at 490.174 kb on + strand at 490.174 kb on + strand at 490.174 kb on + strand at 490.175 kb on - strand at 490.190 kb on + strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.197 kb on + strand at 490.253 kb on + strand at 490.356 kb on + strand, within DDA3937_RS02210 at 490.357 kb on - strand, within DDA3937_RS02210 at 490.391 kb on + strand, within DDA3937_RS02210 at 490.457 kb on - strand, within DDA3937_RS02210 at 490.457 kb on - strand, within DDA3937_RS02210 at 490.503 kb on - strand at 490.554 kb on + strand, within DDA3937_RS02210 at 490.555 kb on - strand, within DDA3937_RS02210 at 490.559 kb on + strand, within DDA3937_RS02210 at 490.570 kb on + strand, within DDA3937_RS02210 at 490.570 kb on + strand, within DDA3937_RS02210 at 490.570 kb on + strand, within DDA3937_RS02210 at 490.571 kb on - strand, within DDA3937_RS02210 at 490.571 kb on - strand, within DDA3937_RS02210 at 490.575 kb on - strand, within DDA3937_RS02210 at 490.584 kb on - strand, within DDA3937_RS02210 at 490.587 kb on - strand, within DDA3937_RS02210 at 490.602 kb on + strand, within DDA3937_RS02210 at 490.603 kb on - strand, within DDA3937_RS02210 at 490.649 kb on + strand, within DDA3937_RS02210 at 490.692 kb on + strand, within DDA3937_RS02210 at 490.692 kb on + strand, within DDA3937_RS02210 at 490.693 kb on - strand at 490.738 kb on - strand, within DDA3937_RS02210 at 490.748 kb on + strand, within DDA3937_RS02210 at 490.786 kb on - strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.801 kb on + strand, within DDA3937_RS02210 at 490.801 kb on + strand, within DDA3937_RS02210 at 490.802 kb on - strand, within DDA3937_RS02210 at 490.844 kb on + strand at 490.845 kb on - strand at 490.848 kb on - strand at 490.848 kb on - strand at 490.894 kb on + strand at 490.915 kb on + strand at 490.916 kb on - strand at 490.930 kb on + strand at 490.945 kb on - strand at 490.962 kb on + strand at 490.962 kb on + strand at 490.976 kb on - strand at 490.993 kb on - strand at 491.023 kb on + strand at 491.048 kb on - strand at 491.095 kb on + strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.098 kb on + strand, within DDA3937_RS02215 at 491.098 kb on + strand, within DDA3937_RS02215 at 491.101 kb on + strand, within DDA3937_RS02215 at 491.108 kb on + strand, within DDA3937_RS02215 at 491.109 kb on - strand, within DDA3937_RS02215 at 491.117 kb on + strand, within DDA3937_RS02215 at 491.170 kb on + strand, within DDA3937_RS02215 at 491.171 kb on - strand, within DDA3937_RS02215 at 491.173 kb on + strand, within DDA3937_RS02215 at 491.173 kb on + strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.191 kb on + strand, within DDA3937_RS02215 at 491.216 kb on - strand, within DDA3937_RS02215 at 491.220 kb on + strand, within DDA3937_RS02215 at 491.220 kb on + strand, within DDA3937_RS02215 at 491.220 kb on + strand, within DDA3937_RS02215 at 491.220 kb on + strand, within DDA3937_RS02215 at 491.221 kb on - strand, within DDA3937_RS02215 at 491.221 kb on - strand, within DDA3937_RS02215 at 491.221 kb on - strand, within DDA3937_RS02215 at 491.221 kb on - strand, within DDA3937_RS02215 at 491.375 kb on + strand, within DDA3937_RS02215 at 491.375 kb on + strand, within DDA3937_RS02215 at 491.375 kb on + strand, within DDA3937_RS02215 at 491.376 kb on - strand, within DDA3937_RS02215 at 491.488 kb on + strand, within DDA3937_RS02215 at 491.531 kb on + strand at 491.560 kb on + strand at 491.581 kb on + strand at 491.581 kb on + strand at 491.581 kb on + strand at 491.601 kb on + strand at 491.602 kb on - strand at 491.602 kb on - strand at 491.602 kb on - strand at 491.621 kb on + strand at 491.624 kb on + strand at 491.625 kb on - strand at 491.625 kb on - strand at 491.627 kb on + strand at 491.710 kb on + strand at 491.711 kb on - strand at 491.714 kb on + strand at 491.714 kb on + strand at 491.714 kb on + strand at 491.714 kb on + strand at 491.715 kb on - strand at 491.715 kb on - strand at 491.715 kb on - strand at 491.784 kb on - strand, within DDA3937_RS02220 at 491.843 kb on - strand, within DDA3937_RS02220 at 491.843 kb on - strand, within DDA3937_RS02220 at 491.846 kb on + strand, within DDA3937_RS02220 at 491.846 kb on + strand, within DDA3937_RS02220 at 491.846 kb on + strand, within DDA3937_RS02220 at 491.847 kb on - strand, within DDA3937_RS02220 at 491.847 kb on - strand, within DDA3937_RS02220 at 491.847 kb on - strand, within DDA3937_RS02220 at 491.848 kb on + strand, within DDA3937_RS02220 at 491.848 kb on + strand, within DDA3937_RS02220 at 491.848 kb on + strand at 491.848 kb on + strand, within DDA3937_RS02220 at 491.848 kb on + strand, within DDA3937_RS02220 at 491.849 kb on - strand, within DDA3937_RS02220 at 491.849 kb on - strand, within DDA3937_RS02220 at 491.849 kb on - strand, within DDA3937_RS02220 at 491.849 kb on - strand, within DDA3937_RS02220 at 491.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 489,300 - DDA3937_RS02200 0.83 -2.2 489,382 + -1.7 489,383 - -2.3 489,383 - -0.3 489,383 - -0.9 489,402 + -1.3 489,403 - +1.1 489,544 + -2.0 489,545 - -0.1 489,584 + -1.9 489,584 + -0.3 489,584 + -1.8 489,584 + +0.4 489,584 + -0.2 489,585 - +1.4 489,585 - +0.8 489,587 + -1.6 489,587 + -0.3 489,587 + -1.5 489,588 - -2.7 489,588 - -0.8 489,588 - +0.7 489,588 - +4.2 489,588 - +1.2 489,588 - +0.1 489,588 - +0.7 489,588 - -1.2 489,588 - +1.6 489,610 - DDA3937_RS02205 0.11 -1.4 489,700 + DDA3937_RS02205 0.25 +0.1 489,701 - DDA3937_RS02205 0.25 -0.2 489,701 - DDA3937_RS02205 0.25 -1.8 489,701 - DDA3937_RS02205 0.25 +0.1 489,705 + DDA3937_RS02205 0.26 -0.6 489,713 + DDA3937_RS02205 0.27 -0.7 489,713 + DDA3937_RS02205 0.27 -3.6 489,713 + DDA3937_RS02205 0.27 +1.2 489,714 - DDA3937_RS02205 0.27 -2.9 489,714 - DDA3937_RS02205 0.27 -2.3 489,714 - DDA3937_RS02205 0.27 -1.5 489,720 + DDA3937_RS02205 0.28 +1.8 489,721 - -0.7 489,795 + DDA3937_RS02205 0.39 -2.9 489,796 - DDA3937_RS02205 0.40 +0.3 489,796 - DDA3937_RS02205 0.40 -1.5 489,858 + DDA3937_RS02205 0.49 -2.9 489,859 - DDA3937_RS02205 0.49 +2.2 489,859 - DDA3937_RS02205 0.49 -3.3 489,929 - DDA3937_RS02205 0.60 +0.6 489,958 - DDA3937_RS02205 0.64 -0.1 489,958 - DDA3937_RS02205 0.64 +1.8 489,958 - DDA3937_RS02205 0.64 -2.0 490,038 + DDA3937_RS02205 0.76 -2.0 490,038 + DDA3937_RS02205 0.76 -0.2 490,039 - DDA3937_RS02205 0.76 -0.9 490,040 + DDA3937_RS02205 0.77 +0.1 490,040 + DDA3937_RS02205 0.77 -1.2 490,040 + DDA3937_RS02205 0.77 +0.3 490,174 + -2.8 490,174 + +1.0 490,174 + -1.9 490,174 + +0.9 490,175 - +0.6 490,190 + -0.1 490,191 - +0.2 490,191 - -4.0 490,191 - -0.4 490,191 - -0.4 490,191 - -1.8 490,197 + -0.3 490,253 + +2.2 490,356 + DDA3937_RS02210 0.15 +0.2 490,357 - DDA3937_RS02210 0.15 -2.2 490,391 + DDA3937_RS02210 0.20 +0.3 490,457 - DDA3937_RS02210 0.31 -0.7 490,457 - DDA3937_RS02210 0.31 -0.3 490,503 - +0.1 490,554 + DDA3937_RS02210 0.47 -0.9 490,555 - DDA3937_RS02210 0.47 +0.3 490,559 + DDA3937_RS02210 0.48 -0.3 490,570 + DDA3937_RS02210 0.50 -2.0 490,570 + DDA3937_RS02210 0.50 +1.0 490,570 + DDA3937_RS02210 0.50 -2.2 490,571 - DDA3937_RS02210 0.50 -2.0 490,571 - DDA3937_RS02210 0.50 -2.0 490,575 - DDA3937_RS02210 0.50 +0.7 490,584 - DDA3937_RS02210 0.52 +0.1 490,587 - DDA3937_RS02210 0.52 -0.2 490,602 + DDA3937_RS02210 0.55 -1.2 490,603 - DDA3937_RS02210 0.55 -0.1 490,649 + DDA3937_RS02210 0.63 -0.7 490,692 + DDA3937_RS02210 0.70 -0.7 490,692 + DDA3937_RS02210 0.70 -1.7 490,693 - +0.1 490,738 - DDA3937_RS02210 0.77 +0.1 490,748 + DDA3937_RS02210 0.79 +0.8 490,786 - DDA3937_RS02210 0.85 -2.0 490,798 + DDA3937_RS02210 0.87 -0.3 490,798 + DDA3937_RS02210 0.87 -1.3 490,798 + DDA3937_RS02210 0.87 +1.7 490,801 + DDA3937_RS02210 0.87 -0.7 490,801 + DDA3937_RS02210 0.87 -1.0 490,802 - DDA3937_RS02210 0.88 -0.9 490,844 + -0.0 490,845 - +0.1 490,848 - +0.3 490,848 - +0.1 490,894 + -1.8 490,915 + -1.2 490,916 - +2.4 490,930 + -0.9 490,945 - +1.1 490,962 + -2.6 490,962 + -1.0 490,976 - -2.7 490,993 - -0.7 491,023 + -1.6 491,048 - -0.9 491,095 + DDA3937_RS02215 0.17 -2.4 491,096 - DDA3937_RS02215 0.17 +0.8 491,096 - DDA3937_RS02215 0.17 -2.0 491,096 - DDA3937_RS02215 0.17 -2.1 491,098 + DDA3937_RS02215 0.18 -0.9 491,098 + DDA3937_RS02215 0.18 +0.5 491,101 + DDA3937_RS02215 0.18 -1.7 491,108 + DDA3937_RS02215 0.20 -0.0 491,109 - DDA3937_RS02215 0.20 -0.0 491,117 + DDA3937_RS02215 0.21 -2.6 491,170 + DDA3937_RS02215 0.30 -0.3 491,171 - DDA3937_RS02215 0.30 -1.5 491,173 + DDA3937_RS02215 0.30 -2.0 491,173 + DDA3937_RS02215 0.30 +0.3 491,176 - DDA3937_RS02215 0.31 -3.9 491,176 - DDA3937_RS02215 0.31 -0.2 491,176 - DDA3937_RS02215 0.31 -2.7 491,176 - DDA3937_RS02215 0.31 +0.8 491,176 - DDA3937_RS02215 0.31 +0.9 491,191 + DDA3937_RS02215 0.33 +0.0 491,216 - DDA3937_RS02215 0.38 -2.9 491,220 + DDA3937_RS02215 0.38 -0.6 491,220 + DDA3937_RS02215 0.38 -1.5 491,220 + DDA3937_RS02215 0.38 -0.9 491,220 + DDA3937_RS02215 0.38 -1.7 491,221 - DDA3937_RS02215 0.38 -1.0 491,221 - DDA3937_RS02215 0.38 +1.1 491,221 - DDA3937_RS02215 0.38 +1.0 491,221 - DDA3937_RS02215 0.38 -0.2 491,375 + DDA3937_RS02215 0.64 -0.3 491,375 + DDA3937_RS02215 0.64 -0.9 491,375 + DDA3937_RS02215 0.64 -2.6 491,376 - DDA3937_RS02215 0.64 -1.3 491,488 + DDA3937_RS02215 0.83 -1.3 491,531 + +1.0 491,560 + -2.0 491,581 + -3.7 491,581 + -0.8 491,581 + -2.0 491,601 + +0.3 491,602 - +0.9 491,602 - +0.4 491,602 - +0.2 491,621 + +0.8 491,624 + -0.3 491,625 - +1.9 491,625 - -0.3 491,627 + +1.7 491,710 + -3.2 491,711 - +1.5 491,714 + -1.0 491,714 + -0.7 491,714 + -0.9 491,714 + -0.8 491,715 - +1.5 491,715 - -0.7 491,715 - -2.2 491,784 - DDA3937_RS02220 0.19 +0.8 491,843 - DDA3937_RS02220 0.29 -0.5 491,843 - DDA3937_RS02220 0.29 -0.1 491,846 + DDA3937_RS02220 0.29 -0.9 491,846 + DDA3937_RS02220 0.29 +0.2 491,846 + DDA3937_RS02220 0.29 -3.0 491,847 - DDA3937_RS02220 0.29 +0.7 491,847 - DDA3937_RS02220 0.29 -0.3 491,847 - DDA3937_RS02220 0.29 +2.9 491,848 + DDA3937_RS02220 0.29 +0.1 491,848 + DDA3937_RS02220 0.29 -0.8 491,848 + -0.7 491,848 + DDA3937_RS02220 0.29 -2.0 491,848 + DDA3937_RS02220 0.29 +1.7 491,849 - DDA3937_RS02220 0.30 -0.7 491,849 - DDA3937_RS02220 0.30 -0.4 491,849 - DDA3937_RS02220 0.30 -0.5 491,849 - DDA3937_RS02220 0.30 -0.4 491,849 - +0.1
Or see this region's nucleotide sequence